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Gene: Gid4 (GID complex subunit 4) Rattus norvegicus

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Symbol:

Gid4

Name:

GID complex subunit 4

RGD ID:

1588894

Description:

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be part of ubiquitin ligase complex. Orthologous to human GID4 (GID complex subunit 4 homolog); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; gentamycin; 17beta-estradiol (ortholog).

Type:

protein-coding (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Previously known as:

glucose-induced degradation protein 4 homolog; hypothetical protein LOC687192; hypothetical protein LOC691649; LOC687192; LOC691649

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GID4 (GID complex subunit 4 homolog)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Gid4 (GID complex subunit 4, VID24 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Gid4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GID4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GID4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Gid4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GID4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GID4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Gid4 (GID complex subunit 4 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GID4 (GID complex subunit 4 homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Gid4 (GID complex subunit 4, VID24 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	gid4 (GID complex subunit 4 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	VID24	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YGR066C	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	gid4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	45,721,055 - 45,747,132 (+)	NCBI		GRCr8
mRatBN7.2	10	45,221,556 - 45,247,627 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	45,221,579 - 45,245,169 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	10	45,245,754 - 45,247,621 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	49,921,761 - 49,947,809 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	49,412,139 - 49,438,197 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	44,915,742 - 44,941,799 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	46,784,124 - 46,810,517 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	46,783,979 - 46,810,524 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	46,539,451 - 46,565,841 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	46,684,548 - 46,685,415 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	44,478,592 - 44,504,744 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gid4	Rat	autistic disorder		ISO	GID4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106 and PMID:30208311
Gid4	Rat	Birt-Hogg-Dube syndrome		ISO	GID4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Birt-Hogg-Dube syndrome	ClinVar	PMID:20188345 and PMID:28492532
Gid4	Rat	common variable immunodeficiency 2		ISO	GID4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Immunodeficiency more ...	ClinVar	PMID:28492532
Gid4	Rat	Joubert syndrome 1		ISO	GID4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Familial aplasia of the vermis	ClinVar	PMID:28492532
Gid4	Rat	Potocki-Lupski syndrome		ISO	GID4 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Potocki-Lupski syndrome	ClinVar	PMID:28837307

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gid4	Rat	17beta-estradiol	decreases expression	ISO	Gid4 (Mus musculus)	6480464	Estradiol results in decreased expression of GID4 mRNA	CTD	PMID:39298647
Gid4	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of GID4 mRNA	CTD	PMID:33387578 and PMID:34747641
Gid4	Rat	2-palmitoylglycerol	increases expression	ISO	GID4 (Homo sapiens)	6480464	2-palmitoylglycerol results in increased expression of GID4 mRNA	CTD	PMID:37199045
Gid4	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Gid4 (Mus musculus)	6480464	bisphenol S results in decreased expression of GID4 mRNA	CTD	PMID:39298647
Gid4	Rat	4-hydroxyphenyl retinamide	decreases expression	ISO	Gid4 (Mus musculus)	6480464	Fenretinide results in decreased expression of GID4 mRNA	CTD	PMID:28973697
Gid4	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Gid4 (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of GID4 mRNA	CTD	PMID:33754040
Gid4	Rat	bisphenol A	increases expression	ISO	GID4 (Homo sapiens)	6480464	bisphenol A results in increased expression of GID4 mRNA	CTD	PMID:29275510
Gid4	Rat	bisphenol F	increases expression	ISO	Gid4 (Mus musculus)	6480464	bisphenol F results in increased expression of GID4 mRNA	CTD	PMID:38685157
Gid4	Rat	cadmium dichloride	decreases expression	ISO	GID4 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of GID4 mRNA	CTD	PMID:38568856
Gid4	Rat	carbon nanotube	decreases expression	ISO	Gid4 (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Gid4	Rat	cisplatin	increases expression	ISO	GID4 (Homo sapiens)	6480464	Cisplatin results in increased expression of GID4 mRNA	CTD	PMID:27392435
Gid4	Rat	cyclosporin A	increases expression	ISO	GID4 (Homo sapiens)	6480464	Cyclosporine results in increased expression of GID4 mRNA	CTD	PMID:20106945 and PMID:27989131
Gid4	Rat	Dibutyl phosphate	affects expression	ISO	GID4 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of GID4 mRNA	CTD	PMID:37042841
Gid4	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of GID4 mRNA	CTD	PMID:33387578
Gid4	Rat	methyl methanesulfonate	increases expression	ISO	GID4 (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of GID4 mRNA	CTD	PMID:23649840
Gid4	Rat	N(4)-hydroxycytidine	decreases expression	ISO	Gid4 (Mus musculus)	6480464	N(4)-hydroxycytidine results in decreased expression of GID4 mRNA	CTD	PMID:37748715
Gid4	Rat	niclosamide	increases expression	ISO	GID4 (Homo sapiens)	6480464	Niclosamide results in increased expression of GID4 mRNA	CTD	PMID:36318118
Gid4	Rat	ozone	multiple interactions	ISO	Gid4 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of GID4 mRNA	CTD	PMID:34911549
Gid4	Rat	phenobarbital	affects expression	ISO	Gid4 (Mus musculus)	6480464	Phenobarbital affects the expression of GID4 mRNA	CTD	PMID:23091169
Gid4	Rat	sodium arsenite	decreases expression	ISO	GID4 (Homo sapiens)	6480464	sodium arsenite results in decreased expression of GID4 mRNA	CTD	PMID:38568856
Gid4	Rat	sunitinib	increases expression	ISO	GID4 (Homo sapiens)	6480464	Sunitinib results in increased expression of GID4 mRNA	CTD	PMID:31533062
Gid4	Rat	testosterone enanthate	affects expression	ISO	GID4 (Homo sapiens)	6480464	testosterone enanthate affects the expression of GID4 mRNA	CTD	PMID:17440010
Gid4	Rat	thiram	decreases expression	ISO	GID4 (Homo sapiens)	6480464	Thiram results in decreased expression of GID4 mRNA	CTD	PMID:38568856
Gid4	Rat	triptonide	increases expression	ISO	Gid4 (Mus musculus)	6480464	triptonide results in increased expression of GID4 mRNA	CTD	PMID:33045310
Gid4	Rat	valproic acid	decreases expression	ISO	GID4 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of GID4 mRNA	CTD	PMID:23179753
Gid4	Rat	valproic acid	decreases methylation	ISO	GID4 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of GID4 gene	CTD	PMID:29154799
Gid4	Rat	valproic acid	affects expression	ISO	GID4 (Homo sapiens)	6480464	Valproic Acid affects the expression of GID4 mRNA	CTD	PMID:25979313
Gid4	Rat	valproic acid	increases expression	ISO	GID4 (Homo sapiens)	6480464	Valproic Acid results in increased expression of GID4 mRNA	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gid4	Rat	proteasome-mediated ubiquitin-dependent protein catabolic process	involved_in	IBA	PANTHER:PTN000407857 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gid4	Rat	ubiquitin ligase complex	part_of	ISO	GID4 (Homo sapiens)	1624291	PMID:29911972	RGD	PMID:29911972
Gid4	Rat	ubiquitin ligase complex	part_of	IEA	UniProtKB:Q8IVV7 and ensembl:ENSP00000268719	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Gid4	Rat	ubiquitin protein ligase activity	enables	IBA	PANTHER:PTN000407857 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932	PMID:29911972

Gid4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	45,721,055 - 45,747,132 (+)	NCBI		GRCr8
mRatBN7.2	10	45,221,556 - 45,247,627 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	45,221,579 - 45,245,169 (+)	Ensembl		mRatBN7.2 Ensembl
mRatBN7.2 Ensembl	10	45,245,754 - 45,247,621 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	49,921,761 - 49,947,809 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	49,412,139 - 49,438,197 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	44,915,742 - 44,941,799 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	46,784,124 - 46,810,517 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	46,783,979 - 46,810,524 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	46,539,451 - 46,565,841 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	46,684,548 - 46,685,415 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	44,478,592 - 44,504,744 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

GID4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	18,039,408 - 18,068,405 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	18,039,408 - 18,068,405 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	17,942,722 - 17,971,719 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	17,883,336 - 17,912,443 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	17,883,335 - 17,912,443	NCBI
Celera	17	18,883,766 - 18,912,866 (+)	NCBI		Celera
Cytogenetic Map	17	p11.2	NCBI
HuRef	17	17,696,381 - 17,725,271 (+)	NCBI		HuRef
CHM1_1	17	17,951,442 - 17,980,554 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	17,986,211 - 18,015,201 (+)	NCBI		T2T-CHM13v2.0

Gid4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	60,307,971 - 60,336,103 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	60,307,971 - 60,341,753 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	60,417,145 - 60,445,277 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	60,417,145 - 60,450,927 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	60,230,647 - 60,258,779 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	60,233,498 - 60,261,472 (+)	NCBI		MGSCv36	mm8
Celera	11	66,422,835 - 66,451,172 (-)	NCBI		Celera
Cytogenetic Map	11	B2	NCBI
cM Map	11	37.81	NCBI

Gid4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	11,226,449 - 11,243,935 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	11,223,083 - 11,242,986 (-)	NCBI	ChiLan1.0	ChiLan1.0

GID4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	52,555,739 - 52,585,045 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	57,267,982 - 57,297,284 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	33,226,374 - 33,256,146 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

GID4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	41,455,823 - 41,477,478 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	41,458,936 - 41,474,358 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	41,595,313 - 41,619,753 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	41,562,631 - 41,587,075 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	41,565,026 - 41,587,075 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	41,530,387 - 41,554,816 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	41,477,802 - 41,502,240 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	41,669,675 - 41,694,110 (-)	NCBI		UU_Cfam_GSD_1.0

Gid4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	61,231,466 - 61,253,168 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936741	1,620,359 - 1,635,799 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936741	1,618,522 - 1,635,776 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GID4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	60,601,003 - 60,617,454 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	60,600,993 - 60,617,601 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

GID4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	17,079,643 - 17,108,651 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	17,079,800 - 17,105,526 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666059	3,799,976 - 3,828,905 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gid4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	3,386,101 - 3,408,924 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	3,385,312 - 3,408,842 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Gid4
138 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	383
Count of miRNA genes:	236
Interacting mature miRNAs:	268
Transcripts:	ENSRNOT00000005237
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	41142633	86142633	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	34490559	45579777	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41333258	86333258	Rat
11528631	Bss117	Bone structure and strength QTL 117	6.41	4e-07	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	10	44947163	45433933	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44441699	89441699	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45029650	95600334	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
11528628	Bss116	Bone structure and strength QTL 116	6.46	4e-07	femur morphology trait (VT:0000559)	femur length (CMO:0000442)	10	44179770	45632973	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42323132	87323132	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44441699	89441699	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42323132	87323132	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35392267	51793994	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	41944526	78307017	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	28875650	52200160	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40035094	102359817	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44441699	89441699	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	42876766	79813922	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat

D10Got413

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	45,741,936 - 45,742,205 (+)	Marker Load Pipeline
mRatBN7.2	10	45,242,431 - 45,242,700 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	46,805,322 - 46,805,590	NCBI	Rnor6.0
Rnor_5.0	10	46,560,646 - 46,560,914	UniSTS	Rnor5.0
RGSC_v3.4	10	46,705,731 - 46,705,999	UniSTS	RGSC3.4
Celera	10	44,499,557 - 44,499,825	UniSTS
Cytogenetic Map	10		RGD

AI112747

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	45,747,019 - 45,747,224 (+)	Marker Load Pipeline
mRatBN7.2	10	45,247,514 - 45,247,719 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	46,810,405 - 46,810,609	NCBI	Rnor6.0
Rnor_5.0	10	46,565,729 - 46,565,933	UniSTS	Rnor5.0
RGSC_v3.4	10	46,710,808 - 46,711,012	UniSTS	RGSC3.4
Celera	10	44,504,632 - 44,504,836	UniSTS
RH 3.4 Map	10	527.88	UniSTS

BE105349

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	45,245,452 - 45,245,602 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	46,808,343 - 46,808,492	NCBI	Rnor6.0
Rnor_5.0	10	46,563,667 - 46,563,816	UniSTS	Rnor5.0
RGSC_v3.4	10	46,708,746 - 46,708,895	UniSTS	RGSC3.4
Celera	10	44,502,570 - 44,502,719	UniSTS
RH 3.4 Map	10	528.88	UniSTS

BE107530

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	45,244,948 - 45,245,133 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	46,807,839 - 46,808,023	NCBI	Rnor6.0
Rnor_5.0	10	46,563,163 - 46,563,347	UniSTS	Rnor5.0
RGSC_v3.4	10	46,804,214 - 46,804,398	UniSTS	RGSC3.4
Celera	10	44,502,066 - 44,502,250	UniSTS
RH 3.4 Map	10	526.9	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001398917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC129460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC169088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005237 ⟹ ENSRNOP00000005237

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	45,245,754 - 45,247,621 (+)	Ensembl
Rnor_6.0 Ensembl	10	46,783,979 - 46,810,524 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095489 ⟹ ENSRNOP00000089835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	45,221,579 - 45,245,169 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113042 ⟹ ENSRNOP00000082053

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	45,221,587 - 45,245,169 (+)	Ensembl

RefSeq Acc Id:

NM_001398917 ⟹ NP_001385846

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	45,721,055 - 45,747,132 (+)	NCBI
mRatBN7.2	10	45,221,556 - 45,247,627 (+)	NCBI

RefSeq Acc Id:

XM_063269843 ⟹ XP_063125913

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	45,721,372 - 45,747,132 (+)	NCBI


Protein RefSeqs	NP_001385846	(Get FASTA)	NCBI Sequence Viewer
	XP_063125913	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69088	(Get FASTA)	NCBI Sequence Viewer
	EDM04648	(Get FASTA)	NCBI Sequence Viewer
	EDM04649	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000082053.1
	ENSRNOP00000089835.1
	ENSRNOP00000106175

Ensembl Acc Id:

ENSRNOP00000005237 ⟸ ENSRNOT00000005237

Ensembl Acc Id:

ENSRNOP00000089835 ⟸ ENSRNOT00000095489

Ensembl Acc Id:

ENSRNOP00000082053 ⟸ ENSRNOT00000113042

RefSeq Acc Id:	NP_001385846 ⟸ NM_001398917
- UniProtKB:	A6HF44 (UniProtKB/TrEMBL), B5DFJ9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125913 ⟸ XM_063269843
- Peptide Label:	isoform X1

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F7ES04-F1-model_v2	AlphaFold	F7ES04	1-217	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-24858	BioCyc
Ensembl Genes	ENSRNOG00000003847	Ensembl
	ENSRNOG00000069998	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005237	ENTREZGENE
	ENSRNOT00000095489.1	UniProtKB/TrEMBL
	ENSRNOT00000113042.1	UniProtKB/TrEMBL
InterPro	Vacuolar_import/degrad_Vid24	UniProtKB/TrEMBL
NCBI Gene	687192	ENTREZGENE
PANTHER	VACUOLAR IMPORT AND DEGRADATION PROTEIN 24	UniProtKB/TrEMBL
	VACUOLAR IMPORT AND DEGRADATION PROTEIN 24	UniProtKB/TrEMBL
Pfam	Vac_ImportDeg	UniProtKB/TrEMBL
PhenoGen	Gid4	PhenoGen
RatGTEx	ENSRNOG00000003847	RatGTEx
	ENSRNOG00000069998	RatGTEx
RNAcentral	URS00022B5C85	RNACentral
UniProt	A0A8I5ZTC0_RAT	UniProtKB/TrEMBL
	A0A8I6AAM6_RAT	UniProtKB/TrEMBL
	A6HF44	ENTREZGENE, UniProtKB/TrEMBL
	B5DFJ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-02	Gid4	GID complex subunit 4	Gid4	GID complex subunit 4	Data merged from RGD:149736084	737654	PROVISIONAL
2021-08-09	Gid4	GID complex subunit 4			Symbol and Name status set to provisional	45752	PROVISIONAL
2014-07-29	Gid4	GID complex subunit 4	LOC691649	hypothetical protein LOC691649	Data merged from RGD:1597245	737654	APPROVED
2013-08-16	Gid4	GID complex subunit 4	LOC687192	hypothetical protein LOC687192	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC691649	hypothetical protein LOC691649			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687192	hypothetical protein LOC687192			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar