Mpv17l (MPV17 mitochondrial inner membrane protein like) - Rat Genome Database

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Gene: Mpv17l (MPV17 mitochondrial inner membrane protein like) Rattus norvegicus
Analyze
Symbol: Mpv17l
Name: MPV17 mitochondrial inner membrane protein like
RGD ID: 2324483
Description: Predicted to be involved in negative regulation of hydrogen peroxide biosynthetic process; negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway; and reactive oxygen species metabolic process. Predicted to localize to mitochondrion and peroxisome. Orthologous to human MPV17L (MPV17 mitochondrial inner membrane protein like); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC100362572; LOC103693261; MPV17 mitochondrial membrane protein-like; Mpv17 transgene, kidney disease mutant-like (predicted)-like; uncharacterized LOC103693261
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2101,988,451 - 2,025,300 (-)NCBI
Rnor_6.0 Ensembl103,321,476 - 3,357,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0103,321,488 - 3,359,219 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0102,198,456 - 2,240,921 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,655,565 - 1,672,677 (+)NCBIRGSC3.4rn4RGSC3.4
Celera101,020,550 - 1,057,289 (-)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:16631601   PMID:18614015   PMID:20178365   PMID:22306510  


Genomics

Comparative Map Data
Mpv17l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2101,988,451 - 2,025,300 (-)NCBI
Rnor_6.0 Ensembl103,321,476 - 3,357,470 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0103,321,488 - 3,359,219 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0102,198,456 - 2,240,921 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,655,565 - 1,672,677 (+)NCBIRGSC3.4rn4RGSC3.4
Celera101,020,550 - 1,057,289 (-)NCBICelera
Cytogenetic Map10q11NCBI
MPV17L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1615,395,754 - 15,413,271 (+)EnsemblGRCh38hg38GRCh38
GRCh381615,395,569 - 15,413,271 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371615,489,611 - 15,507,128 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,397,137 - 15,411,044 (+)NCBINCBI36hg18NCBI36
Celera1615,170,072 - 15,184,012 (+)NCBI
Cytogenetic Map16p13.11NCBI
HuRef1614,882,901 - 14,896,979 (+)NCBIHuRef
CHM1_11615,573,943 - 15,587,891 (+)NCBICHM1_1
Mpv17l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,721,025 - 13,767,483 (+)NCBIGRCm39mm39
GRCm39 Ensembl1613,721,025 - 13,767,483 (+)Ensembl
GRCm381613,903,161 - 13,949,619 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,903,161 - 13,949,619 (+)EnsemblGRCm38mm10GRCm38
MGSCv371613,940,788 - 13,949,450 (+)NCBIGRCm37mm9NCBIm37
MGSCv361613,854,273 - 13,862,935 (+)NCBImm8
Celera1614,545,960 - 14,554,599 (+)NCBICelera
Cytogenetic Map16A1NCBI
Mpv17l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955442269,382 - 313,056 (+)NCBIChiLan1.0ChiLan1.0
MPV17L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11615,703,834 - 15,712,232 (+)NCBIpanpan1.1PanPan1.1panPan2
MPV17L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,385,199 - 28,393,560 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha629,746,839 - 29,757,055 (-)NCBI
ROS_Cfam_1.0628,546,545 - 28,556,760 (-)NCBI
UMICH_Zoey_3.1628,349,672 - 28,359,880 (-)NCBI
UNSW_CanFamBas_1.0628,242,054 - 28,250,022 (-)NCBI
UU_Cfam_GSD_1.0628,647,729 - 28,655,709 (-)NCBI
Mpv17l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,919,182 - 114,934,718 (+)NCBI
SpeTri2.0NW_0049365013,017,071 - 3,028,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MPV17L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,427,395 - 7,442,033 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,423,083 - 7,441,583 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
MPV17L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,397,299 - 14,407,694 (+)NCBI
Vero_WHO_p1.0NW_02366606815,656,812 - 15,668,534 (-)NCBI
Mpv17l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248248,707,104 - 8,723,649 (+)NCBI

Position Markers
BI281552  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2625,235,937 - 25,236,157 (+)MAPPER
Rnor_6.0626,599,962 - 26,600,181NCBIRnor6.0
Rnor_5.0636,416,342 - 36,416,561UniSTSRnor5.0
RGSC_v3.4625,214,606 - 25,214,825UniSTSRGSC3.4
Celera624,727,062 - 24,727,281UniSTS
RH 3.4 Map6119.08UniSTS
BE110423  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2625,224,001 - 25,224,207 (+)MAPPER
Rnor_6.0626,588,051 - 26,588,256NCBIRnor6.0
Rnor_5.0636,404,755 - 36,404,960UniSTSRnor5.0
RGSC_v3.4625,201,311 - 25,201,516UniSTSRGSC3.4
Celera624,715,084 - 24,715,289UniSTS
RH 3.4 Map693.0UniSTS
MARC_16687-16688:1017861800:1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2625,231,637 - 25,232,402 (+)MAPPER
Rnor_6.0626,595,687 - 26,596,451NCBIRnor6.0
Rnor_5.0636,412,391 - 36,413,155UniSTSRnor5.0
RGSC_v3.4625,208,947 - 25,209,711UniSTSRGSC3.4
Celera624,722,720 - 24,723,484UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129592136Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135538813Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138594330Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142669970Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)10144902893Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1076442166221621Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1028476255460218Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:25
Interacting mature miRNAs:26
Transcripts:ENSRNOT00000004384
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 4 4 24 14
Low 2 24 45 37 37 4 4 50 21 41 5 4
Below cutoff 1 17 8 18 4 6 5 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000004384   ⟹   ENSRNOP00000004384
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl103,338,808 - 3,357,278 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000086929
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl103,353,519 - 3,357,402 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090166   ⟹   ENSRNOP00000074254
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl103,321,476 - 3,357,470 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093444   ⟹   ENSRNOP00000076186
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl103,338,880 - 3,353,769 (+)Ensembl
RefSeq Acc Id: XM_003752286   ⟹   XP_003752334
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera101,020,550 - 1,039,692 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006220558   ⟹   XP_006220620
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera101,020,550 - 1,039,694 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767466   ⟹   XP_008765688
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,988,451 - 2,007,639 (-)NCBI
Rnor_6.0103,338,755 - 3,359,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767467   ⟹   XP_008765689
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,988,451 - 2,007,640 (-)NCBI
Rnor_6.0103,338,751 - 3,359,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767468   ⟹   XP_008765690
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,988,451 - 2,025,300 (-)NCBI
Rnor_6.0103,321,488 - 3,359,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767469   ⟹   XP_008765691
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,988,451 - 2,007,350 (-)NCBI
Rnor_6.0103,340,257 - 3,359,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008767470   ⟹   XP_008765692
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,988,451 - 2,007,222 (-)NCBI
Rnor_6.0103,339,167 - 3,359,219 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008773941   ⟹   XP_008772163
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera101,020,550 - 1,057,289 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773949   ⟹   XP_008772171
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera101,020,550 - 1,038,191 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008773956   ⟹   XP_008772178
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera101,020,550 - 1,039,279 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039087605   ⟹   XP_038943533
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2102,003,843 - 2,007,642 (-)NCBI
RefSeq Acc Id: XR_005490607
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,988,451 - 2,007,641 (-)NCBI
RefSeq Acc Id: XR_005490608
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2101,990,927 - 2,007,641 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_003752334   ⟸   XM_003752286
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006220620   ⟸   XM_006220558
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008772163   ⟸   XM_008773941
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008772178   ⟸   XM_008773956
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008772171   ⟸   XM_008773949
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765690   ⟸   XM_008767468
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765689   ⟸   XM_008767467
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008765688   ⟸   XM_008767466
- Peptide Label: isoform X1
- UniProtKB: D4A908 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765692   ⟸   XM_008767470
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008765691   ⟸   XM_008767469
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000074254   ⟸   ENSRNOT00000090166
RefSeq Acc Id: ENSRNOP00000004384   ⟸   ENSRNOT00000004384
RefSeq Acc Id: ENSRNOP00000076186   ⟸   ENSRNOT00000093444
RefSeq Acc Id: XP_038943533   ⟸   XM_039087605
- Peptide Label: isoform X3

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696935
Promoter ID:EPDNEW_R7455
Type:initiation region
Name:Mpv17l_1
Description:MPV17 mitochondrial inner membrane protein like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0103,338,818 - 3,338,878EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324483 AgrOrtholog
Ensembl Genes ENSRNOG00000003285 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000004384 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000074254 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000076186 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000004384 UniProtKB/TrEMBL
  ENSRNOT00000090166 UniProtKB/TrEMBL
  ENSRNOT00000093444 UniProtKB/TrEMBL
InterPro Mpv17_PMP22 UniProtKB/TrEMBL
KEGG Report rno:100362572 UniProtKB/TrEMBL
NCBI Gene 100362572 ENTREZGENE
PANTHER Mpv17_PMP22 UniProtKB/TrEMBL
Pfam Mpv17_PMP22 UniProtKB/TrEMBL
PhenoGen Mpv17l PhenoGen
UniProt A0A0G2K7L3_RAT UniProtKB/TrEMBL
  A0A1W2Q697_RAT UniProtKB/TrEMBL
  D4A908 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Mpv17l  MPV17 mitochondrial inner membrane protein like  LOC103693261  uncharacterized LOC103693261  Data Merged 737654 PROVISIONAL
2016-03-22 Mpv17l  MPV17 mitochondrial inner membrane protein like  Mpv17l  MPV17 mitochondrial membrane protein-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103693261  uncharacterized LOC103693261      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-08-29 Mpv17l  MPV17 mitochondrial membrane protein-like  LOC100362572  Mpv17 transgene, kidney disease mutant-like (predicted)-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100362572  Mpv17 transgene, kidney disease mutant-like (predicted)-like      Symbol and Name status set to provisional 70820 PROVISIONAL