Rpl36a-ps7 (ribosomal protein L36A, pseudogene 7) - Rat Genome Database

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Gene: Rpl36a-ps7 (ribosomal protein L36A, pseudogene 7) Rattus norvegicus
Analyze
Symbol: Rpl36a-ps7
Name: ribosomal protein L36A, pseudogene 7
RGD ID: 11432034
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosol and ribosome. Predicted to be part of ribonucleoprotein complex.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L36a-like; ENSRNOG00000064619; LOC108352065
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,475,789 - 15,476,165 (-)NCBIGRCr8
mRatBN7.21014,971,306 - 14,971,657 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1014,971,285 - 14,971,604 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1014,971,285 - 14,971,604 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,318,232 - 15,318,622 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera1014,640,115 - 14,640,505 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rpl36a-ps7
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000107777   ⟹   ENSRNOP00000086816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1014,971,285 - 14,971,604 (-)Ensembl
Protein Sequences
Ensembl Protein ENSRNOP00000086816.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000086816   ⟸   ENSRNOT00000107777

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25740 BioCyc
Ensembl Genes ENSRNOG00000064619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000107777.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.450.80 UniProtKB/TrEMBL
InterPro Ribosomal_L44e UniProtKB/TrEMBL
  Ribosomal_zn-bd UniProtKB/TrEMBL
NCBI Gene LOC108352065 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L36A UniProtKB/TrEMBL
  PTHR10369 UniProtKB/TrEMBL
Pfam Ribosomal_L44 UniProtKB/TrEMBL
PhenoGen Rpl36a-ps7 PhenoGen
PROSITE RIBOSOMAL_L44E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064619 RatGTEx
Superfamily-SCOP SSF57829 UniProtKB/TrEMBL
UniProt A0A8I6A205_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rpl36a-ps7  ribosomal protein L36A, pseudogene 7  LOC108352065  60S ribosomal protein L36a-like  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC108352065  60S ribosomal protein L36a-like  ENSRNOG00000064619    Data merged from RGD:150345061 737654 PROVISIONAL
2021-08-31 ENSRNOG00000064619        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108352065  60S ribosomal protein L36a-like      Symbol and Name status set to provisional 70820 PROVISIONAL