Ranbp17 (RAN binding protein 17) - Rat Genome Database

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Gene: Ranbp17 (RAN binding protein 17) Rattus norvegicus
Analyze
Symbol: Ranbp17
Name: RAN binding protein 17
RGD ID: 1562576
Description: Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to human RANBP17 (RAN binding protein 17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC303029; ran-binding protein 17; RGD1562576; similar to hypothetical protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,304,634 - 18,607,162 (-)NCBIGRCr8
mRatBN7.21017,800,406 - 18,102,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1017,800,999 - 18,102,831 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1022,549,092 - 22,857,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,037,685 - 22,346,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01017,525,836 - 17,827,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01018,139,763 - 18,445,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,139,766 - 18,443,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01018,023,823 - 18,330,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41018,111,581 - 18,413,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1017,441,300 - 17,740,782 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nuclear pore  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ranbp17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81018,304,634 - 18,607,162 (-)NCBIGRCr8
mRatBN7.21017,800,406 - 18,102,947 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1017,800,999 - 18,102,831 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1022,549,092 - 22,857,795 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01022,037,685 - 22,346,389 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01017,525,836 - 17,827,317 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01018,139,763 - 18,445,347 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1018,139,766 - 18,443,964 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01018,023,823 - 18,330,481 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41018,111,581 - 18,413,103 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1017,441,300 - 17,740,782 (-)NCBICelera
Cytogenetic Map10q12NCBI
RANBP17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385170,862,018 - 171,300,015 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5170,861,870 - 171,300,015 (+)EnsemblGRCh38hg38GRCh38
GRCh375170,289,022 - 170,727,019 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365170,221,600 - 170,659,624 (+)NCBINCBI36Build 36hg18NCBI36
Build 345170,221,599 - 170,659,623NCBI
Celera5166,321,110 - 166,759,577 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5165,386,841 - 165,824,900 (+)NCBIHuRef
CHM1_15169,721,527 - 170,159,603 (+)NCBICHM1_1
T2T-CHM13v2.05171,402,331 - 171,840,355 (+)NCBIT2T-CHM13v2.0
Ranbp17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391133,161,794 - 33,463,789 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1133,161,795 - 33,463,746 (-)EnsemblGRCm39 Ensembl
GRCm381133,211,794 - 33,513,784 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1133,211,795 - 33,513,746 (-)EnsemblGRCm38mm10GRCm38
MGSCv371133,111,794 - 33,413,746 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361133,112,419 - 33,413,635 (-)NCBIMGSCv36mm8
Celera1135,623,919 - 35,926,644 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.21NCBI
Ranbp17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540823,777,698 - 24,092,682 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540823,777,501 - 24,092,993 (+)NCBIChiLan1.0ChiLan1.0
RANBP17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24166,017,542 - 166,440,272 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15164,157,093 - 164,575,563 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05166,220,228 - 166,649,006 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15172,979,949 - 173,402,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5172,980,121 - 173,401,395 (+)Ensemblpanpan1.1panPan2
RANBP17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1440,828,393 - 41,126,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl440,828,395 - 41,127,268 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha440,778,918 - 41,079,709 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0441,208,134 - 41,509,345 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl441,208,137 - 41,509,291 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1441,022,717 - 41,323,476 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0441,213,065 - 41,513,833 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0441,723,475 - 42,024,572 (-)NCBIUU_Cfam_GSD_1.0
Ranbp17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721395,059,513 - 95,343,778 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366093,782,193 - 4,066,266 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366093,880,389 - 4,065,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1652,836,297 - 53,160,162 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11652,836,291 - 53,160,156 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21657,033,539 - 57,353,878 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12373,073,889 - 73,475,803 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2373,073,871 - 73,476,689 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660345,176,076 - 5,599,921 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473318,771,144 - 19,121,060 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473318,772,283 - 19,120,506 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ranbp17
1084 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:423
Count of miRNA genes:243
Interacting mature miRNAs:290
Transcripts:ENSRNOT00000059895
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
737823Alc12Alcohol consumption QTL 124.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)101724551319388279Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat

Markers in Region
D10Mgh18  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21017,926,015 - 17,926,223 (+)MAPPERmRatBN7.2
Rnor_6.01018,265,296 - 18,265,501NCBIRnor6.0
Rnor_5.01018,149,199 - 18,149,404UniSTSRnor5.0
RGSC_v3.41018,236,527 - 18,236,733RGDRGSC3.4
RGSC_v3.41018,236,528 - 18,236,733UniSTSRGSC3.4
RGSC_v3.11018,237,576 - 18,237,782RGD
Celera1017,566,367 - 17,566,542UniSTS
RH 2.0 Map10213.1RGD
Cytogenetic Map10q12UniSTS
D10Got37  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21018,044,925 - 18,045,181 (+)MAPPERmRatBN7.2
Rnor_6.01018,384,720 - 18,384,975NCBIRnor6.0
Rnor_5.01018,268,471 - 18,268,726UniSTSRnor5.0
RGSC_v3.41018,355,093 - 18,355,349RGDRGSC3.4
RGSC_v3.41018,355,094 - 18,355,349UniSTSRGSC3.4
RGSC_v3.11018,356,142 - 18,356,398RGD
Celera1017,683,958 - 17,684,213UniSTS
RH 2.0 Map10219.5RGD
Cytogenetic Map10q12UniSTS
D10Got35  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21018,016,708 - 18,016,901 (+)MAPPERmRatBN7.2
Rnor_6.01018,356,859 - 18,357,049NCBIRnor6.0
Rnor_5.01018,240,610 - 18,240,800UniSTSRnor5.0
RGSC_v3.41018,326,879 - 18,327,072RGDRGSC3.4
RGSC_v3.41018,326,880 - 18,327,072UniSTSRGSC3.4
RGSC_v3.11018,327,928 - 18,328,121RGD
Celera1017,655,770 - 17,655,960UniSTS
RH 2.0 Map10222.3RGD
Cytogenetic Map10q12UniSTS
D10Wox3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21017,907,113 - 17,907,293 (+)MAPPERmRatBN7.2
Rnor_6.01018,246,394 - 18,246,573NCBIRnor6.0
Rnor_5.01018,130,297 - 18,130,476UniSTSRnor5.0
RGSC_v3.41018,217,626 - 18,217,805UniSTSRGSC3.4
RGSC_v3.41018,217,625 - 18,217,805RGDRGSC3.4
Celera1017,547,465 - 17,547,644UniSTS
Cytogenetic Map10q12UniSTS
D10Wox2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21017,907,103 - 17,907,297 (+)MAPPERmRatBN7.2
Rnor_6.01018,246,384 - 18,246,577NCBIRnor6.0
Rnor_5.01018,130,287 - 18,130,480UniSTSRnor5.0
RGSC_v3.41018,217,616 - 18,217,809UniSTSRGSC3.4
Celera1017,547,455 - 17,547,648UniSTS
Cytogenetic Map10q12UniSTS
RH136704  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21017,984,959 - 17,985,141 (+)MAPPERmRatBN7.2
Rnor_6.01018,324,581 - 18,324,762NCBIRnor6.0
Rnor_5.01018,208,332 - 18,208,513UniSTSRnor5.0
RGSC_v3.41018,295,130 - 18,295,311UniSTSRGSC3.4
Celera1017,624,613 - 17,624,794UniSTS
Cytogenetic Map10q12UniSTS
RH135021  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21017,967,594 - 17,967,758 (+)MAPPERmRatBN7.2
Rnor_6.01018,307,216 - 18,307,379NCBIRnor6.0
Rnor_5.01018,190,967 - 18,191,130UniSTSRnor5.0
RGSC_v3.41018,277,765 - 18,277,928UniSTSRGSC3.4
Celera1017,607,248 - 17,607,411UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000059895   ⟹   ENSRNOP00000056640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1017,800,999 - 18,102,831 (-)Ensembl
Rnor_6.0 Ensembl1018,140,356 - 18,443,934 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080021   ⟹   ENSRNOP00000075380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1018,139,766 - 18,443,964 (-)Ensembl
RefSeq Acc Id: NM_001106994   ⟹   NP_001100464
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,305,227 - 18,607,047 (-)NCBI
mRatBN7.21017,800,999 - 18,102,831 (-)NCBI
Rnor_6.01018,140,356 - 18,443,934 (-)NCBI
Rnor_5.01018,023,823 - 18,330,481 (-)NCBI
RGSC_v3.41018,111,581 - 18,413,103 (-)RGD
Celera1017,441,300 - 17,740,782 (-)RGD
Sequence:
RefSeq Acc Id: XM_008767582   ⟹   XP_008765804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,304,634 - 18,607,160 (-)NCBI
mRatBN7.21017,800,406 - 18,102,947 (-)NCBI
Rnor_6.01018,139,763 - 18,445,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017597247   ⟹   XP_017452736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,304,634 - 18,603,152 (-)NCBI
mRatBN7.21017,800,406 - 18,097,211 (-)NCBI
Rnor_6.01018,139,763 - 18,438,244 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039085897   ⟹   XP_038941825
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,304,634 - 18,563,538 (-)NCBI
mRatBN7.21017,800,406 - 18,059,304 (-)NCBI
RefSeq Acc Id: XM_063268959   ⟹   XP_063125029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,304,634 - 18,607,160 (-)NCBI
RefSeq Acc Id: XM_063268960   ⟹   XP_063125030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,304,634 - 18,607,162 (-)NCBI
RefSeq Acc Id: XM_063268961   ⟹   XP_063125031
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,304,634 - 18,607,117 (-)NCBI
RefSeq Acc Id: XR_010055171
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,389,011 - 18,607,162 (-)NCBI
RefSeq Acc Id: XR_010055172
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,389,011 - 18,607,162 (-)NCBI
RefSeq Acc Id: XR_010055173
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,491,026 - 18,607,161 (-)NCBI
RefSeq Acc Id: XR_010055174
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81018,471,762 - 18,607,161 (-)NCBI
RefSeq Acc Id: NP_001100464   ⟸   NM_001106994
- UniProtKB: D3ZYN8 (UniProtKB/TrEMBL),   A6HDG6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765804   ⟸   XM_008767582
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KAF6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452736   ⟸   XM_017597247
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000075380   ⟸   ENSRNOT00000080021
Ensembl Acc Id: ENSRNOP00000056640   ⟸   ENSRNOT00000059895
RefSeq Acc Id: XP_038941825   ⟸   XM_039085897
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063125030   ⟸   XM_063268960
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063125029   ⟸   XM_063268959
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063125031   ⟸   XM_063268961
- Peptide Label: isoform X5
Protein Domains
Importin N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KAF6-F1-model_v2 AlphaFold A0A0G2KAF6 1-1108 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697100
Promoter ID:EPDNEW_R7620
Type:multiple initiation site
Name:Ranbp17_1
Description:RAN binding protein 17
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01018,444,036 - 18,444,096EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562576 AgrOrtholog
BioCyc Gene G2FUF-25605 BioCyc
Ensembl Genes ENSRNOG00000005042 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059895.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  XPO4/7-like UniProtKB/TrEMBL
KEGG Report rno:303029 UniProtKB/TrEMBL
NCBI Gene 303029 ENTREZGENE
PANTHER PTHR12596 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 17 UniProtKB/TrEMBL
Pfam IBN_N UniProtKB/TrEMBL
PhenoGen Ranbp17 PhenoGen
RatGTEx ENSRNOG00000005042 RatGTEx
SMART IBN_N UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2KAF6 ENTREZGENE
  A6HDG6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZYN8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Ranbp17  RAN binding protein 17  RGD1562576_predicted  similar to hypothetical protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562576_predicted  similar to hypothetical protein (predicted)  LOC303029  similar to hypothetical protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC303029  similar to hypothetical protein      Symbol and Name status set to provisional 70820 PROVISIONAL