D10Rat225 Marker Search Result - Rat Genome Database

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Marker: D10Rat225

Symbol: D10Rat225
Previously known as: R0292-A04; oxsts8742; 
RGD ID: 41698
Expected Size: 217 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.210772,292 - 772,499 (+)MAPPERmRatBN7.2
Rnor_6.010793,024 - 793,230NCBIRnor6.0
Rnor_5.01011,472,870 - 11,473,076UniSTSRnor5.0
RGSC_v3.410695,259 - 695,466RGDRGSC3.4
RGSC_v3.410695,260 - 695,466UniSTSRGSC3.4
RGSC_v3.110695,139 - 695,513RGD
Celera1011,362,142 - 11,362,348UniSTS
FHH x ACI Map104.54RGD
FHH x ACI Map104.54UniSTS
Cytogenetic Map10q11-q12UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Myh11  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer GCCAAATGCTTGGACAGAAT
Reverse Primer CCCTATCCCTGAGACGAACA
 
Template 
GNATGCATGNAGGTCAGATCTAGAGGATCCCCAACCTTTACATGCCGAACCAGCTCATCAGCAC
TGGGACACAATGTCAGGCATAACTAAAGATTTATTGATGTTGTGCTCACGATTTCAGAGAGTTT
GGTTCATAGCTACCCAACCCCAAATGCCAAATGCTTGGACAGAATATCATAGTGGTTGGAGGAC
ATGGGAGGTTCTTCACTTCTTTTTATTTTTTTTTACATTTATTTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGACAGACAGACA
GACAGACAGACAGACAGACAGACTAGGGATTGTTCGTCTCAGGGATAGGGAAGTAGGAAGCTTA
CACTATAAAAATCAATAAACATGTTCATACCAGGGGNATTNCCCCNCCCNNGGNGGNGGGGGGG
NNTNNNCCCCCCCCTTNNTTNNGGGNNTTTNGGGGGNT

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
3136Myh11myosin heavy chain 1110743364838459Rat

Nucleotide Sequences
GenBank Nucleotide CH474126.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH616929.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 24582 UniSTS
UniSTS 226335 UniSTS