C1qtnf2 (C1q and TNF related 2) - Rat Genome Database

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Gene: C1qtnf2 (C1q and TNF related 2) Rattus norvegicus
Analyze
Symbol: C1qtnf2
Name: C1q and TNF related 2
RGD ID: 1561041
Description: Predicted to enable identical protein binding activity and signaling receptor binding activity. Predicted to be involved in regulation of lipid metabolic process. Predicted to act upstream of or within positive regulation of MAPK cascade; positive regulation of glucose import; and positive regulation of small molecule metabolic process. Predicted to be located in extracellular space. Predicted to be part of protein-containing complex. Orthologous to human C1QTNF2 (C1q and TNF related 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: Adih; adiponectin h; C1q and tumor necrosis factor related protein 2; complement C1q tumor necrosis factor-related protein 2; Ctrp2; LOC497886; RGD1561041; similar to C1q and tumor necrosis factor related protein 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,443,326 - 28,460,400 (+)NCBIGRCr8
mRatBN7.21027,941,948 - 27,958,926 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1027,941,948 - 27,959,185 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,702,345 - 32,719,322 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,240,729 - 1,257,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,672,923 - 27,689,866 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,067,102 - 29,084,035 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,067,102 - 29,084,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01028,909,018 - 28,925,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,571,051 - 28,588,714 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1027,434,824 - 27,451,717 (+)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15231994   PMID:17716811   PMID:18783346   PMID:31439668  


Genomics

Comparative Map Data
C1qtnf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81028,443,326 - 28,460,400 (+)NCBIGRCr8
mRatBN7.21027,941,948 - 27,958,926 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1027,941,948 - 27,959,185 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1032,702,345 - 32,719,322 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0101,240,729 - 1,257,709 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01027,672,923 - 27,689,866 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01029,067,102 - 29,084,035 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1029,067,102 - 29,084,035 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01028,909,018 - 28,925,541 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41028,571,051 - 28,588,714 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1027,434,824 - 27,451,717 (+)NCBICelera
Cytogenetic Map10q21NCBI
C1QTNF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385160,347,754 - 160,370,626 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5160,347,754 - 160,370,641 (-)EnsemblGRCh38hg38GRCh38
GRCh375159,774,761 - 159,797,633 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365159,707,339 - 159,730,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 345159,707,356 - 159,730,207NCBI
Celera5155,807,245 - 155,830,113 (-)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5154,868,511 - 154,891,382 (-)NCBIHuRef
CHM1_15159,207,652 - 159,230,548 (-)NCBICHM1_1
T2T-CHM13v2.05160,876,282 - 160,899,121 (-)NCBIT2T-CHM13v2.0
C1qtnf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391143,364,984 - 43,382,485 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1143,365,103 - 43,382,352 (+)EnsemblGRCm39 Ensembl
GRCm381143,474,306 - 43,491,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1143,474,276 - 43,491,525 (+)EnsemblGRCm38mm10GRCm38
MGSCv371143,287,846 - 43,305,027 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361143,317,763 - 43,334,948 (+)NCBIMGSCv36mm8
MGSCv361143,815,568 - 43,832,825 (+)NCBIMGSCv36mm8
Celera1148,098,345 - 48,116,759 (+)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1125.72NCBI
C1qtnf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540814,218,502 - 14,240,252 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540814,219,263 - 14,266,832 (-)NCBIChiLan1.0ChiLan1.0
C1QTNF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24155,534,613 - 155,556,147 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15153,669,254 - 153,695,693 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05155,738,893 - 155,761,650 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15162,433,415 - 162,456,123 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5162,433,415 - 162,456,123 (-)Ensemblpanpan1.1panPan2
C1QTNF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1450,352,245 - 50,372,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl450,367,910 - 50,372,597 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha450,247,737 - 50,268,070 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0450,787,605 - 50,807,939 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl450,787,388 - 50,808,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1450,596,009 - 50,616,311 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0450,719,773 - 50,740,067 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0451,240,059 - 51,260,605 (+)NCBIUU_Cfam_GSD_1.0
C1qtnf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213104,758,722 - 104,778,624 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365153,208,061 - 3,228,225 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365153,208,042 - 3,227,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1QTNF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1663,167,184 - 63,189,815 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11663,167,087 - 63,185,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21668,538,952 - 68,557,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C1QTNF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12362,709,899 - 62,729,828 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2362,707,090 - 62,716,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603414,872,708 - 14,895,784 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
C1qtnf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473329,193,290 - 29,215,675 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473329,193,020 - 29,216,557 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C1qtnf2
165 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:97
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000005161
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat

Markers in Region
RH137984  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21027,942,456 - 27,942,648 (+)MAPPERmRatBN7.2
Rnor_6.01029,067,569 - 29,067,760NCBIRnor6.0
Rnor_5.01028,909,485 - 28,909,676UniSTSRnor5.0
RGSC_v3.41028,571,518 - 28,571,709UniSTSRGSC3.4
Celera1027,435,291 - 27,435,482UniSTS
RH 3.4 Map10293.5UniSTS
Cytogenetic Map10q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 20 3 7 4 5 26 27 11 4
Low 2 23 54 41 12 41 4 6 74 9 14 4
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000005161   ⟹   ENSRNOP00000005161
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1027,941,948 - 27,958,933 (+)Ensembl
Rnor_6.0 Ensembl1029,067,102 - 29,084,035 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000097801   ⟹   ENSRNOP00000077656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1027,954,929 - 27,959,185 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000101070   ⟹   ENSRNOP00000095030
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1027,942,023 - 27,959,185 (+)Ensembl
RefSeq Acc Id: NM_001191918   ⟹   NP_001178847
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,443,455 - 28,460,389 (+)NCBI
mRatBN7.21027,941,990 - 27,958,926 (+)NCBI
Rnor_6.01029,067,102 - 29,084,035 (+)NCBI
Rnor_5.01028,909,018 - 28,925,541 (+)NCBI
Celera1027,434,824 - 27,451,717 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039086544   ⟹   XP_038942472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81028,443,326 - 28,460,400 (+)NCBI
mRatBN7.21027,941,948 - 27,958,914 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001178847 (Get FASTA)   NCBI Sequence Viewer  
  XP_038942472 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM04135 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005161
  ENSRNOP00000005161.4
  ENSRNOP00000077656.1
  ENSRNOP00000095030
  ENSRNOP00000095030.1
GenBank Protein SOR70292 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001178847   ⟸   NM_001191918
- Peptide Label: precursor
- UniProtKB: A0A8I6AKQ7 (UniProtKB/TrEMBL),   A0A3B0J1M6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000005161   ⟸   ENSRNOT00000005161
RefSeq Acc Id: XP_038942472   ⟸   XM_039086544
- Peptide Label: isoform X1
- UniProtKB: D3ZCS2 (UniProtKB/TrEMBL),   A0A3B0J1M6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000077656   ⟸   ENSRNOT00000097801
RefSeq Acc Id: ENSRNOP00000095030   ⟸   ENSRNOT00000101070
Protein Domains
C1q

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZCS2-F1-model_v2 AlphaFold D3ZCS2 1-294 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697113
Promoter ID:EPDNEW_R7638
Type:initiation region
Name:C1qtnf2_1
Description:C1q and TNF related 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01029,067,083 - 29,067,143EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561041 AgrOrtholog
BioCyc Gene G2FUF-25453 BioCyc
Ensembl Genes ENSRNOG00000003870 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005161.6 UniProtKB/TrEMBL
  ENSRNOT00000097801.1 UniProtKB/TrEMBL
  ENSRNOT00000101070 ENTREZGENE
  ENSRNOT00000101070.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Tumour_necrosis_fac-like UniProtKB/TrEMBL
KEGG Report rno:497886 UniProtKB/TrEMBL
NCBI Gene 497886 ENTREZGENE
PANTHER COMPLEMENT C1Q TUMOR NECROSIS FACTOR-RELATED PROTEIN 2 UniProtKB/TrEMBL
  EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
Pfam C1q UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
PhenoGen C1qtnf2 PhenoGen
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000003870 RatGTEx
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP TNF_like UniProtKB/TrEMBL
UniProt A0A3B0J1M6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKQ7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZCS2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-09 C1qtnf2  C1q and TNF related 2  C1qtnf2  C1q and tumor necrosis factor related protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 C1qtnf2  C1q and tumor necrosis factor related protein 2  RGD1561041_predicted  similar to C1q and tumor necrosis factor related protein 2 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561041_predicted  similar to C1q and tumor necrosis factor related protein 2 (predicted)  LOC497886  similar to C1q and tumor necrosis factor related protein 2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC497886  similar to C1q and tumor necrosis factor related protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL