Fahd1 (fumarylacetoacetate hydrolase domain containing 1) - Rat Genome Database

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Gene: Fahd1 (fumarylacetoacetate hydrolase domain containing 1) Rattus norvegicus
Analyze
Symbol: Fahd1
Name: fumarylacetoacetate hydrolase domain containing 1
RGD ID: 1304560
Description: Predicted to enable hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances; oxaloacetate decarboxylase activity; and oxaloacetate tautomerase activity. Predicted to be involved in oxaloacetate metabolic process and pyruvate metabolic process. Predicted to be located in cytosol and nucleoplasm. Predicted to be active in mitochondrion. Orthologous to human FAHD1 (fumarylacetoacetate hydrolase domain containing 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: acylpyruvase FAHD1, mitochondrial; fumarylacetoacetate hydrolase domain-containing protein 1; LOC302980; OAA decarboxylase; oxaloacetate decarboxylase; oxaloacetate decarboxylase, mitochondrial; oxaloacetate tautomerase FAHD1, mitochondrial; RGD1304560; similar to RIKEN cDNA 1110025H10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Alc5 Alc9
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,378,058 - 14,379,497 (-)NCBIGRCr8
mRatBN7.21013,873,539 - 13,874,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,873,527 - 13,875,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,620,597 - 18,622,036 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,109,457 - 18,110,896 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,608,674 - 13,610,113 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,214,518 - 14,215,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,214,519 - 14,215,957 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,030,533 - 14,031,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,101,624 - 14,103,063 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,101,624 - 14,103,063 (-)NCBI
Celera1013,552,748 - 13,554,187 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (ISO,ISS)
mitochondrion  (IBA,ISO,ISS)
nucleoplasm  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12865426   PMID:14651853   PMID:15489334   PMID:18614015   PMID:21878618   PMID:25575590  


Genomics

Comparative Map Data
Fahd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81014,378,058 - 14,379,497 (-)NCBIGRCr8
mRatBN7.21013,873,539 - 13,874,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,873,527 - 13,875,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,620,597 - 18,622,036 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01018,109,457 - 18,110,896 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01013,608,674 - 13,610,113 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01014,214,518 - 14,215,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,214,519 - 14,215,957 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,030,533 - 14,031,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,101,624 - 14,103,063 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,101,624 - 14,103,063 (-)NCBI
Celera1013,552,748 - 13,554,187 (-)NCBICelera
Cytogenetic Map10q12NCBI
FAHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,827,206 - 1,840,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl161,826,967 - 1,840,207 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,877,207 - 1,890,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,817,226 - 1,830,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,817,225 - 1,818,909NCBI
Celera162,089,471 - 2,102,473 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,800,249 - 1,813,209 (+)NCBIHuRef
CHM1_1161,877,193 - 1,890,193 (+)NCBICHM1_1
T2T-CHM13v2.0161,842,993 - 1,856,076 (+)NCBIT2T-CHM13v2.0
Fahd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,067,866 - 25,069,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,067,866 - 25,069,338 (-)EnsemblGRCm39 Ensembl
GRCm381724,848,896 - 24,850,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,848,892 - 24,850,364 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,985,841 - 24,987,247 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,565,856 - 24,577,737 (-)NCBIMGSCv36mm8
Celera1725,375,861 - 25,377,266 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1712.53NCBI
Fahd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544215,450,066 - 15,451,797 (-)NCBIChiLan1.0ChiLan1.0
LOC100975679
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,093,654 - 2,099,243 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1165,874,794 - 5,887,000 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v016449,359 - 451,070 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,082,536 - 39,084,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,070,562 - 39,083,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,321,707 - 40,323,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,399,045 - 39,400,712 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1639,075,779 - 39,077,446 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,048,338 - 39,050,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,527,051 - 39,528,718 (-)NCBIUU_Cfam_GSD_1.0
Fahd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,528,167 - 104,529,733 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366942,179,730 - 2,181,296 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,141,132 - 40,141,806 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114121,538,308 - 121,539,037 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,731,150 - 1,732,086 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,731,239 - 1,731,913 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,351,613 - 29,352,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fahd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913432,780 - 434,359 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fahd1
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:17
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000019767
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat

Markers in Region
RH133587  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21013,873,671 - 13,873,891 (+)MAPPERmRatBN7.2
Rnor_6.01014,214,651 - 14,214,870NCBIRnor6.0
Rnor_5.01014,030,666 - 14,030,885UniSTSRnor5.0
RGSC_v3.41014,101,757 - 14,101,976UniSTSRGSC3.4
Celera1013,552,881 - 13,553,100UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000019767   ⟹   ENSRNOP00000019767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1013,873,527 - 13,875,012 (-)Ensembl
Rnor_6.0 Ensembl1014,214,519 - 14,215,957 (-)Ensembl
RefSeq Acc Id: NM_001024991   ⟹   NP_001020162
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81014,378,058 - 14,379,497 (-)NCBI
mRatBN7.21013,873,539 - 13,874,978 (-)NCBI
Rnor_6.01014,214,518 - 14,215,957 (-)NCBI
Rnor_5.01014,030,533 - 14,031,972 (-)NCBI
RGSC_v3.41014,101,624 - 14,103,063 (-)RGD
Celera1013,552,748 - 13,554,187 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001020162 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH78950 (Get FASTA)   NCBI Sequence Viewer  
  EDM03881 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019767.4
  ENSRNOP00055041149
  ENSRNOP00060014088
  ENSRNOP00065013566
GenBank Protein Q6AYQ8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020162   ⟸   NM_001024991
- UniProtKB: Q6AYQ8 (UniProtKB/Swiss-Prot),   A6HCX6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019767   ⟸   ENSRNOT00000019767
Protein Domains
Fumarylacetoacetase-like C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYQ8-F1-model_v2 AlphaFold Q6AYQ8 1-221 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697029
Promoter ID:EPDNEW_R7554
Type:multiple initiation site
Name:Fahd1_1
Description:fumarylacetoacetate hydrolase domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01014,215,968 - 14,216,028EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304560 AgrOrtholog
BioCyc Gene G2FUF-25821 BioCyc
Ensembl Genes ENSRNOG00000014727 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055028863 UniProtKB/Swiss-Prot
  ENSRNOG00060010672 UniProtKB/Swiss-Prot
  ENSRNOG00065010903 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000019767.7 UniProtKB/Swiss-Prot
  ENSRNOT00055049971 UniProtKB/Swiss-Prot
  ENSRNOT00060018083 UniProtKB/Swiss-Prot
  ENSRNOT00065017677 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.850.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7110058 IMAGE-MGC_LOAD
InterPro Fumarylacetoacetase-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fumarylacetoacetase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:302980 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:93802 IMAGE-MGC_LOAD
NCBI Gene 302980 ENTREZGENE
PANTHER ACYLPYRUVASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ACYLPYRUVASE FAHD1, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAA_hydrolase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fahd1 PhenoGen
RatGTEx ENSRNOG00000014727 RatGTEx
  ENSRNOG00055028863 RatGTEx
  ENSRNOG00060010672 RatGTEx
  ENSRNOG00065010903 RatGTEx
Superfamily-SCOP FAH UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6HCX6 ENTREZGENE, UniProtKB/TrEMBL
  FAHD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Fahd1  fumarylacetoacetate hydrolase domain containing 1  RGD1304560  similar to RIKEN cDNA 1110025H10  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1304560  similar to RIKEN cDNA 1110025H10  RGD1304560_predicted  similar to RIKEN cDNA 1110025H10 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1304560_predicted  similar to RIKEN cDNA 1110025H10 (predicted)  LOC302980_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC302980_predicted  similar to RIKEN cDNA 1110025H10 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL