FAHD1 (fumarylacetoacetate hydrolase domain containing 1) - Rat Genome Database

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Gene: FAHD1 (fumarylacetoacetate hydrolase domain containing 1) Canis lupus familiaris
Analyze
Symbol: FAHD1
Name: fumarylacetoacetate hydrolase domain containing 1
RGD ID: 12381469
Description: ENCODES a protein that exhibits acetylpyruvate hydrolase activity (inferred); catalytic activity (inferred); fumarylpyruvate hydrolase activity (inferred); INVOLVED IN pyruvate metabolic process (inferred); ASSOCIATED WITH azoospermia (ortholog); epilepsy (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acylpyruvase FAHD1, mitochondrial; fumarylacetoacetate hydrolase domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,082,536 - 39,084,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,070,562 - 39,083,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,321,707 - 40,323,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,399,045 - 39,400,712 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1639,075,779 - 39,077,446 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,048,338 - 39,050,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,527,051 - 39,528,718 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
mitochondrion  (IEA)
nucleoplasm  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FAHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,082,536 - 39,084,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,070,562 - 39,083,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,321,707 - 40,323,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,399,045 - 39,400,712 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1639,075,779 - 39,077,446 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,048,338 - 39,050,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,527,051 - 39,528,718 (-)NCBIUU_Cfam_GSD_1.0
FAHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,827,206 - 1,840,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl161,826,967 - 1,840,207 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,877,207 - 1,890,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,817,226 - 1,830,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,817,225 - 1,818,909NCBI
Celera162,089,471 - 2,102,473 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,800,249 - 1,813,209 (+)NCBIHuRef
CHM1_1161,877,193 - 1,890,193 (+)NCBICHM1_1
T2T-CHM13v2.0161,843,060 - 1,856,076 (+)NCBIT2T-CHM13v2.0
Fahd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,067,870 - 25,069,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,067,866 - 25,069,338 (-)EnsemblGRCm39 Ensembl
GRCm381724,848,896 - 24,850,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,848,892 - 24,850,364 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,985,841 - 24,987,247 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,565,856 - 24,577,737 (-)NCBIMGSCv36mm8
Celera1725,375,861 - 25,377,266 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Fahd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,873,539 - 13,874,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,873,527 - 13,875,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,620,597 - 18,622,036 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01018,109,457 - 18,110,896 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01013,608,674 - 13,610,113 (-)NCBIRnor_WKY
Rnor_6.01014,214,518 - 14,215,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,214,519 - 14,215,957 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,030,533 - 14,031,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,101,624 - 14,103,063 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,101,624 - 14,103,063 (-)NCBI
Celera1013,552,748 - 13,554,187 (-)NCBICelera
Cytogenetic Map10q12NCBI
Fahd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544215,450,066 - 15,451,797 (-)NCBIChiLan1.0ChiLan1.0
LOC100975679
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v016449,359 - 451,070 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Fahd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,528,167 - 104,529,733 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366942,179,730 - 2,181,296 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,141,132 - 40,141,806 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114121,538,308 - 121,539,037 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,731,150 - 1,732,086 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,731,239 - 1,731,913 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,351,613 - 29,352,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fahd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913432,780 - 434,359 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAHD1
3 total Variants

Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCAFT00000073539   ⟹   ENSCAFP00000054239
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl639,070,562 - 39,083,971 (-)Ensembl
RefSeq Acc Id: XM_038479524   ⟹   XP_038335452
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1639,075,779 - 39,077,446 (-)NCBI
RefSeq Acc Id: XM_038540787   ⟹   XP_038396715
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0639,527,051 - 39,528,718 (-)NCBI
RefSeq Acc Id: XM_038604904   ⟹   XP_038460832
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0639,048,338 - 39,050,005 (-)NCBI
RefSeq Acc Id: XM_038669590   ⟹   XP_038525518
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0639,399,045 - 39,400,712 (-)NCBI
RefSeq Acc Id: XM_547188   ⟹   XP_547188
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1639,082,536 - 39,084,248 (-)NCBI
Dog10K_Boxer_Tasha640,321,707 - 40,323,374 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_038335452 (Get FASTA)   NCBI Sequence Viewer  
  XP_038396715 (Get FASTA)   NCBI Sequence Viewer  
  XP_038460832 (Get FASTA)   NCBI Sequence Viewer  
  XP_038525518 (Get FASTA)   NCBI Sequence Viewer  
  XP_547188 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_547188   ⟸   XM_547188
- Sequence:
RefSeq Acc Id: ENSCAFP00000054239   ⟸   ENSCAFT00000073539
RefSeq Acc Id: XP_038335452   ⟸   XM_038479524
RefSeq Acc Id: XP_038460832   ⟸   XM_038604904
RefSeq Acc Id: XP_038525518   ⟸   XM_038669590
RefSeq Acc Id: XP_038396715   ⟸   XM_038540787
Protein Domains
FAA_hydrolase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000044566 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845019076 UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000054239.1 UniProtKB/TrEMBL
  ENSCAFP00845026360.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000073539.2 UniProtKB/TrEMBL
  ENSCAFT00845033670.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.850.10 UniProtKB/TrEMBL
InterPro Fumarylacetoacetase-like_C UniProtKB/TrEMBL
  Fumarylacetoacetase_C_sf UniProtKB/TrEMBL
NCBI Gene FAHD1 ENTREZGENE
Pfam FAA_hydrolase UniProtKB/TrEMBL
Superfamily-SCOP SSF56529 UniProtKB/TrEMBL
UniProt A0A8I3S0V1_CANLF UniProtKB/TrEMBL