FAHD1 (fumarylacetoacetate hydrolase domain containing 1) - Rat Genome Database

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Gene: FAHD1 (fumarylacetoacetate hydrolase domain containing 1) Sus scrofa
Analyze
Symbol: FAHD1
Name: fumarylacetoacetate hydrolase domain containing 1
RGD ID: 13905999
Description: ENCODES a protein that exhibits acetylpyruvate hydrolase activity (inferred); catalytic activity (inferred); fumarylpyruvate hydrolase activity (inferred); INVOLVED IN pyruvate metabolic process (inferred); ASSOCIATED WITH azoospermia (ortholog); epilepsy (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (inferred); mitochondrion (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,141,132 - 40,141,806 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114121,538,308 - 121,539,037 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IEA)
mitochondrion  (IBA,IEA)
nucleoplasm  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FAHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,141,132 - 40,141,806 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114121,538,308 - 121,539,037 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,827,206 - 1,840,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl161,826,967 - 1,840,207 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,877,207 - 1,890,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,817,226 - 1,830,173 (+)NCBINCBI36Build 36hg18NCBI36
Build 34161,817,225 - 1,818,909NCBI
Celera162,089,471 - 2,102,473 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef161,800,249 - 1,813,209 (+)NCBIHuRef
CHM1_1161,877,193 - 1,890,193 (+)NCBICHM1_1
T2T-CHM13v2.0161,843,060 - 1,856,076 (+)NCBIT2T-CHM13v2.0
Fahd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,067,870 - 25,069,276 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1725,067,866 - 25,069,338 (-)EnsemblGRCm39 Ensembl
GRCm381724,848,896 - 24,850,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,848,892 - 24,850,364 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,985,841 - 24,987,247 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361724,565,856 - 24,577,737 (-)NCBIMGSCv36mm8
Celera1725,375,861 - 25,377,266 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Fahd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,873,539 - 13,874,978 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1013,873,527 - 13,875,012 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1018,620,597 - 18,622,036 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01018,109,457 - 18,110,896 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01013,608,674 - 13,610,113 (-)NCBIRnor_WKY
Rnor_6.01014,214,518 - 14,215,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,214,519 - 14,215,957 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,030,533 - 14,031,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,101,624 - 14,103,063 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11014,101,624 - 14,103,063 (-)NCBI
Celera1013,552,748 - 13,554,187 (-)NCBICelera
Cytogenetic Map10q12NCBI
Fahd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544215,450,066 - 15,451,797 (-)NCBIChiLan1.0ChiLan1.0
LOC100975679
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v016449,359 - 451,070 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FAHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,082,536 - 39,084,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,070,562 - 39,083,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,321,707 - 40,323,374 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0639,399,045 - 39,400,712 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1639,075,779 - 39,077,446 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0639,048,338 - 39,050,005 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0639,527,051 - 39,528,718 (-)NCBIUU_Cfam_GSD_1.0
Fahd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,528,167 - 104,529,733 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366942,179,730 - 2,181,296 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,731,150 - 1,732,086 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl51,731,239 - 1,731,913 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606829,351,613 - 29,352,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fahd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913432,780 - 434,359 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 1 2 4 2 1 1
Low 9 2 2 5 19 2 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021073219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSSCT00000053004   ⟹   ENSSSCP00000053962
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl340,141,132 - 40,141,806 (-)Ensembl
RefSeq Acc Id: XM_021073219   ⟹   XP_020928878
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114121,538,308 - 121,539,037 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020928878 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020928878   ⟸   XM_021073219
- Sequence:
RefSeq Acc Id: ENSSSCP00000053962   ⟸   ENSSSCT00000053004
Protein Domains
FAA_hydrolase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000039715 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000053962.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053004.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.850.10 UniProtKB/TrEMBL
InterPro Fumarylacetoacetase-like_C UniProtKB/TrEMBL
  Fumarylacetoacetase_C_sf UniProtKB/TrEMBL
NCBI Gene FAHD1 ENTREZGENE
Pfam FAA_hydrolase UniProtKB/TrEMBL
Superfamily-SCOP SSF56529 UniProtKB/TrEMBL
UniProt A0A287BCW7_PIG UniProtKB/TrEMBL