Fahd1 (fumarylacetoacetate hydrolase domain containing 1) - Rat Genome Database

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Gene: Fahd1 (fumarylacetoacetate hydrolase domain containing 1) Ictidomys tridecemlineatus
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Symbol: Fahd1
Name: fumarylacetoacetate hydrolase domain containing 1
RGD ID: 12589360
Description: ENCODES a protein that exhibits acetylpyruvate hydrolase activity (ortholog); fumarylpyruvate hydrolase activity (ortholog); oxaloacetate decarboxylase activity (ortholog); ASSOCIATED WITH azoospermia (ortholog); epilepsy (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acylpyruvase FAHD1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,528,167 - 104,529,733 (+)NCBI
SpeTri2.0NW_0049366942,179,730 - 2,181,296 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (ISO)
mitochondrion  (ISO)
nucleoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Fahd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344104,528,167 - 104,529,733 (+)NCBI
SpeTri2.0NW_0049366942,179,730 - 2,181,296 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38161,827,206 - 1,840,207 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl161,826,967 - 1,840,207 (+)EnsemblGRCh38hg38GRCh38
GRCh37161,877,207 - 1,890,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36161,817,226 - 1,830,173 (+)NCBINCBI36hg18NCBI36
Build 34161,817,225 - 1,818,909NCBI
Celera162,089,471 - 2,102,473 (+)NCBI
Cytogenetic Map16p13.3NCBI
HuRef161,800,249 - 1,813,209 (+)NCBIHuRef
CHM1_1161,877,193 - 1,890,193 (+)NCBICHM1_1
T2T-CHM13v2.0161,843,060 - 1,856,076 (+)NCBI
Fahd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391725,067,870 - 25,069,276 (-)NCBIGRCm39mm39
GRCm39 Ensembl1725,067,866 - 25,069,338 (-)Ensembl
GRCm381724,848,896 - 24,850,302 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1724,848,892 - 24,850,364 (-)EnsemblGRCm38mm10GRCm38
MGSCv371724,985,841 - 24,987,247 (-)NCBIGRCm37mm9NCBIm37
MGSCv361724,565,856 - 24,577,737 (-)NCBImm8
Celera1725,375,861 - 25,377,266 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Fahd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21013,873,539 - 13,874,978 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1013,873,527 - 13,875,012 (-)Ensembl
Rnor_6.01014,214,518 - 14,215,957 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1014,214,519 - 14,215,957 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01014,030,533 - 14,031,972 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41014,101,624 - 14,103,063 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11014,101,624 - 14,103,063 (-)NCBI
Celera1013,552,748 - 13,554,187 (-)NCBICelera
Cytogenetic Map10q12NCBI
Fahd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544215,450,066 - 15,451,797 (-)NCBIChiLan1.0ChiLan1.0
LOC100975679
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v016449,359 - 451,070 (+)NCBIMhudiblu_PPA_v0panPan3
FAHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1639,082,536 - 39,084,248 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl639,070,562 - 39,083,971 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha640,321,707 - 40,323,374 (-)NCBI
ROS_Cfam_1.0639,399,045 - 39,400,712 (-)NCBI
UMICH_Zoey_3.1639,075,779 - 39,077,446 (-)NCBI
UNSW_CanFamBas_1.0639,048,338 - 39,050,005 (-)NCBI
UU_Cfam_GSD_1.0639,527,051 - 39,528,718 (-)NCBI
FAHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl340,141,132 - 40,141,806 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114121,538,308 - 121,539,037 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
FAHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.151,731,150 - 1,732,086 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl51,731,239 - 1,731,913 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606829,351,613 - 29,352,918 (-)NCBIVero_WHO_p1.0
Fahd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624913432,780 - 434,359 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005337818   ⟹   XP_005337875
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024409344104,528,167 - 104,529,733 (+)NCBI
SpeTri2.0NW_0049366942,179,730 - 2,181,296 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337875 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005337875   ⟸   XM_005337818
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Fahd1 ENTREZGENE