Advanced Search (OLGA)

Gene: Spsb3 (splA/ryanodine receptor domain and SOCS box containing 3) Rattus norvegicus

Analyze

Symbol:

Spsb3

Name:

splA/ryanodine receptor domain and SOCS box containing 3

RGD ID:

1310936

Description:

Predicted to enable ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in several processes, including negative regulation of cGAS/STING signaling pathway; negative regulation of epithelial to mesenchymal transition; and protein K48-linked ubiquitination. Predicted to be part of Cul5-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Predicted to be active in nucleus. Orthologous to human SPSB3 (splA/ryanodine receptor domain and SOCS box containing 3); INTERACTS WITH 17beta-estradiol; 2,4-dinitrotoluene; 2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC302981; SPRY domain-containing SOCS box protein 3; T-complex expressed gene 1; Tce1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,411,692 - 14,417,357 (+)	NCBI		GRCr8
mRatBN7.2	10	13,907,175 - 13,912,841 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,907,253 - 13,912,841 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	18,654,799 - 18,659,932 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,143,659 - 18,148,792 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,642,876 - 13,648,009 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,248,199 - 14,253,815 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,248,399 - 14,253,815 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	14,064,726 - 14,069,831 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	14,135,818 - 14,140,923 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	14,136,129 - 14,140,924 (+)	NCBI
Celera	10	13,586,941 - 13,592,046 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

developmental and epileptic encephalopathy 1 (ISO)

epilepsy (ISO)

Idiopathic Generalized Epilepsy (ISO)

short-rib thoracic dysplasia 9 with or without polydactyly (ISO)

tuberous sclerosis 2 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-dinitrotoluene (EXP)

2,6-dinitrotoluene (EXP)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

alpha-pinene (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

diuron (ISO)

elemental selenium (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

formaldehyde (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

Licochalcone B (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

phenethyl isothiocyanate (EXP)

resveratrol (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

tamoxifen (ISO)

temozolomide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

zearalenone (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cGAS/STING signaling pathway (ISO)

negative regulation of epithelial to mesenchymal transition (ISO)

proteasome-mediated ubiquitin-dependent protein catabolic process (IBA,ISO)

protein K48-linked ubiquitination (ISO)

protein ubiquitination (IEA)

ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

Cul5-RING ubiquitin ligase complex (ISO)

nucleus (IEA,ISO)

SCF ubiquitin ligase complex (IBA)

Molecular Function

protein binding (ISO)

ubiquitin-like ligase-substrate adaptor activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Spsb3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	14,411,692 - 14,417,357 (+)	NCBI		GRCr8
mRatBN7.2	10	13,907,175 - 13,912,841 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	13,907,253 - 13,912,841 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	18,654,799 - 18,659,932 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	18,143,659 - 18,148,792 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	13,642,876 - 13,648,009 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	14,248,199 - 14,253,815 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	14,248,399 - 14,253,815 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	14,064,726 - 14,069,831 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	14,135,818 - 14,140,923 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	14,136,129 - 14,140,924 (+)	NCBI
Celera	10	13,586,941 - 13,592,046 (+)	NCBI		Celera
Cytogenetic Map	10	q12	NCBI

SPSB3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	1,776,712 - 1,782,571 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	1,776,712 - 1,793,700 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	1,826,713 - 1,832,572 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	1,766,714 - 1,772,582 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	2,038,990 - 2,044,859 (-)	NCBI		Celera
Cytogenetic Map	16	p13.3	NCBI
HuRef	16	1,749,609 - 1,755,478 (-)	NCBI		HuRef
CHM1_1	16	1,826,661 - 1,832,529 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	1,792,547 - 1,798,407 (-)	NCBI		T2T-CHM13v2.0

Spsb3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	25,104,956 - 25,111,124 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	25,105,617 - 25,111,126 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	24,885,982 - 24,892,150 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	24,886,643 - 24,892,152 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	25,023,619 - 25,029,092 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	24,615,081 - 24,619,747 (+)	NCBI		MGSCv36	mm8
Celera	17	25,413,484 - 25,418,837 (+)	NCBI		Celera
Cytogenetic Map	17	A3.3	NCBI
cM Map	17	12.53	NCBI

Spsb3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	15,487,475 - 15,493,422 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	15,486,845 - 15,493,422 (+)	NCBI	ChiLan1.0	ChiLan1.0

SPSB3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	2,043,351 - 2,048,145 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	5,824,795 - 5,830,723 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	399,090 - 405,020 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	1,830,040 - 1,835,499 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	1,830,040 - 1,835,504 (-)	Ensembl	panpan1.1		panPan2

SPSB3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	39,122,148 - 39,127,444 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	39,122,247 - 39,127,446 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	40,361,044 - 40,366,240 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	39,438,582 - 39,443,761 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	39,438,588 - 39,443,757 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	39,115,275 - 39,120,468 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	39,087,856 - 39,093,050 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	39,566,315 - 39,571,495 (+)	NCBI		UU_Cfam_GSD_1.0

Spsb3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	104,492,050 - 104,497,453 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936694	2,212,299 - 2,217,140 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936694	2,212,022 - 2,217,409 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPSB3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	40,185,014 - 40,190,518 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	40,184,534 - 40,190,519 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	41,622,709 - 41,626,519 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SPSB3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	1,685,741 - 1,691,542 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	1,686,095 - 1,691,489 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	29,394,945 - 29,400,809 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spsb3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624913	470,002 - 475,765 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624913	469,732 - 475,767 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Spsb3
39 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	50
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000020733
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	1	24158324	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2293680	Bss40	Bone structure and strength QTL 40	5.66	0.0001	femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	10	1	35225947	Rat
7387235	Uae41	Urinary albumin excretion QTL 41	5.26	0.1874	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	10	1	29497586	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
737820	Alc9	Alcohol consumption QTL 9	2.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	19233348	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
631828	Alc5	Alcohol consumption QTL 5	2.4		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	10	5144027	17245662	Rat
634327	Hc4	Hypercalciuria QTL 4	2.4		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	10	1	38328221	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
631660	Hcar1	Hepatocarcinoma resistance QTL 1	3.4	0.0001	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	10	6154182	15990232	Rat
1576304	Schws7	Schwannoma susceptibility QTL 7		0.0115	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	4765527	19816042	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat

Markers in Region

RH134784

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	13,909,292 - 13,909,491 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	14,250,270 - 14,250,468	NCBI	Rnor6.0
Rnor_5.0	10	14,066,286 - 14,066,484	UniSTS	Rnor5.0
RGSC_v3.4	10	14,137,378 - 14,137,576	UniSTS	RGSC3.4
Celera	10	13,588,501 - 13,588,699	UniSTS
Cytogenetic Map	10	q12	UniSTS

RH138928

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	13,911,961 - 13,912,121 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	14,252,939 - 14,253,098	NCBI	Rnor6.0
Rnor_5.0	10	14,068,955 - 14,069,114	UniSTS	Rnor5.0
RGSC_v3.4	10	14,140,047 - 14,140,206	UniSTS	RGSC3.4
Celera	10	13,591,170 - 13,591,329	UniSTS
RH 3.4 Map	10	172.3	UniSTS
Cytogenetic Map	10	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039085870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020733 ⟹ ENSRNOP00000020733

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,907,253 - 13,912,841 (+)	Ensembl
Rnor_6.0 Ensembl	10	14,248,710 - 14,253,815 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077689 ⟹ ENSRNOP00000071059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	13,907,461 - 13,912,841 (+)	Ensembl
Rnor_6.0 Ensembl	10	14,248,399 - 14,253,563 (+)	Ensembl

RefSeq Acc Id:

NM_001106988 ⟹ NP_001100458

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,412,252 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,733 - 13,912,838 (+)	NCBI
Rnor_6.0	10	14,248,710 - 14,253,815 (+)	NCBI
Rnor_5.0	10	14,064,726 - 14,069,831 (+)	NCBI
RGSC_v3.4	10	14,135,818 - 14,140,923 (+)	RGD
Celera	10	13,586,941 - 13,592,046 (+)	RGD

Sequence:

show sequence

CACCCAGACAGTCCACTCAGGAGAGGAGATCCAGACCTCCCAATGCCTTTACTTTTGTCCCAAG
AACGACGTCAAGCCCGTGAGTTTAAGGTTGTATCAAAGACCGAGTTTGTAGTGTGCGGAGCGGG
ATGGGTGAGAGGGAGTTGTGTGGTGCAGGAAGTGGTGGGTCTCCAACGACGAGAAGGGCTGTCA
GGAGTGGATGACAGCTGTGTTTCTGGCATGAGGAACTGGATGCTGGGGATGCCATTTGCCAAAG
TGGACAGCGGAGGAGGAGCAAGTTAAGTGTCTAATGCCTGAGGGGCGGCAGCTCCTGAACGTAA
TGCAGAGATGGGCTGGGGCACCTCCAAAGTCATGGGTGTCTGGGTTGTGTTTCATACCATCACC
CTGGGCTTGATTGAGGAGCTCAGATACTGGAGCCAGGTCCTCTTCACTATGGCCCGGCGTGCAC
GGAGTAGCAGGGCATGGCACTTTGTCCTGAGTGCAGCACGCCGAGATACAGATGCTCGAGCTGT
GGCTCTGGCAGGCAACTCTAACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCCGACTCT
GACCCTGAGTACTCTTCCCTGCCACCATCCATCCCCAGTGCTGTGCCTGTGACAGGAGAGTCCT
TCTGTGACTGTGAGGGCCAGAATGAGGCTACCTTCTGCAACAGTTTACACACAGCACACCGTGG
CAAGGACTGCCGTTGTGGTGAGGAGGATGAGGATTTTGATTGGGTATGGGATGACCTGAACAAG
TCCTCAGCCACCTTGCTGAGCTGTGATAATCGAAAGGTTAGCTTTCACATGGAGTACAGCTGTG
GCACAGCAGCCATTCGGGGCACCAAGGAGCTAGGGGATGGCCAACACTTCTGGGAAATCAAGAT
GACCTCTCCGGTGTATGGCACTGATATGATGGTGGGCATCGGGACATCAGACGTAGACCTGGAC
AAGTACCACCACACGTTCTGCAGCCTGCTGGGCAGGGATGAAGACAGCTGGGGGCTCTCCTACA
CGGGGCTCCTCCACCACAAAGGCGACAAGACGAGCTTCTCTTCACGCTTCGGCCAGGGCTCTAT
CATTGGCGTACACTTGGACACCTGGCATGGGACACTGACTTTTTTCAAGAATAGGAAGTGCATA
GGAGTGGCTGCCACTCGGCTTCAGAACAGAAGGTTCTACCCGATGGTCTGCTCGACCGCCGCCA
AGAGCAGCATGAAGGTCATTCGCTCCTGTGCCAGCTCCACATCCCTGCAGTACCTGTGCTGCTA
CCGCCTGCGCCAGTTGCGGCCAGACTCAGGGGACACCCTCGAGGGCCTGCCCTTGCCACCCGGC
CTCAAGCAGGTGCTGCATAACAAGCTGGGCTGGGTCCTGAGCATGAACTGCAGCCACTGGACAT
CCCCTGCACCCCCTCCGGGCACAGCTGCCCCAGCCGCTGAGAGAGATTCCCGGGAGACCAGGCC
CTGTCAGAGGAAGCGCTGCCGAAGAAGCTGACTTCTCCCCGGGAATGCAGACACCTTTCTTTCT
TGCCCTTCCAGGGCAGCAGGAGAGGGGAGAACGGAGGTCTAGGCTTTTCCCTGTCTCCCCGAGG
CCAGGACAGTCTTCTCTGTTGGCCATGGAGTGTGACAGCTGTTCTACCGCCTGTGCTGGTAGGG
AAACAGCACTCCTTCCTGTTTGTCCTTTGAGTTGCCATGTATCCTGGGAGCTGCAGCCAGGCGT
CTGGACCTAGATTCCAAGCCTGGGAGGCTGGCTGACGAAGTGGAGTGCATTCATATCCCAGGGA
AGAGATGGGCTGTCCCGACCCACAGGTCTGTGGGGTTTTCCTGACTTGCATTGCATGTTGTCAG
CGCCTGCTCCTGTCACAGAGATGTCAGTGGGTGCCCTGGGAAGGGATTCTGTCTCGTCCCCATA
GGTTCTATCATTAAAAGCGTCCTCACAAATGCC

hide sequence

RefSeq Acc Id:

XM_017597221 ⟹ XP_017452710

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,692 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,175 - 13,912,841 (+)	NCBI
Rnor_6.0	10	14,248,199 - 14,253,813 (+)	NCBI

Sequence:

show sequence

CAGCCCGCCTTCGGCTGCCGGGCCAATGCAGCGCGGGGGCGGGGATTGTTTGCGTCGCGACCGG
AACGGAAAGTGGGTCAGCCCGGGCGGAGCGCGTTGGCTGCAGGTCCTCTTCACTATGGCCCGGC
GTGCACGGAGTAGCAGGGCATGGCACTTTGTCCTGAGTGCAGCACGCCGAGATACAGATGCTCG
AGCTGTGGCTCTGGCAGGCAACTCTAACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCC
GACTCTGACCCTGAGTACTCTTCCCTGCCACCATCCATCCCCAGTGCTGTGCCTGTGACAGGAG
AGTCCTTCTGTGACTGTGAGGGCCAGAATGAGGCTACCTTCTGCAACAGTTTACACACAGCACA
CCGTGGCAAGGACTGCCGTTGTGGTGAGGAGGATGAGGGTGAGTGTCTTGCCGTAGGGACGTGT
GCAGGGCTGGGCAGGTTCTCTGGGTTGGAAGGCTCCACTTTGCTCTGCCCCTCCCTAGTCTGGG
CCTTCTATCCTACAGATTTTGATTGGGTATGGGATGACCTGAACAAGTCCTCAGCCACCTTGCT
GAGCTGTGATAATCGAAAGGTTAGCTTTCACATGGAGTACAGCTGTGGCACAGCAGCCATTCGG
GGCACCAAGGAGCTAGGGGATGGCCAACACTTCTGGGAAATCAAGATGACCTCTCCGGTGTATG
GCACTGATATGATGGTGGGCATCGGGACATCAGACGTAGACCTGGACAAGTACCACCACACGTT
CTGCAGCCTGCTGGGCAGGGATGAAGACAGCTGGGGGCTCTCCTACACGGGTAGGTGTTGCCTG
GGCTATGGGTGGGGCTGGCAGTGCCACAGACCTCCCAGGCTCACACCTCTGCTCCTTACAGGGC
TCCTCCACCACAAAGGCGACAAGACGAGCTTCTCTTCACGCTTCGGCCAGGGCTCTATCATTGG
CGTACACTTGGACACCTGGCATGGGACACTGACTTTTTTCAAGAATAGGAAGTGCATAGGAGTG
GCTGCCACTCGGCTTCAGAACAGAAGGTTCTACCCGATGGTCTGCTCGACCGCCGCCAAGAGCA
GCATGAAGGTCATTCGCTCCTGTGCCAGCTCCACATCCCTGCAGTACCTGTGCTGCTACCGCCT
GCGCCAGTTGCGGCCAGACTCAGGGGACACCCTCGAGGGCCTGCCCTTGCCACCCGGCCTCAAG
CAGGTGCTGCATAACAAGCTGGGCTGGGTCCTGAGCATGAACTGCAGCCACTGGACATCCCCTG
CACCCCCTCCGGGCACAGCTGCCCCAGCCGCTGAGAGAGATTCCCGGGAGACCAGGCCCTGTCA
GAGGAAGCGCTGCCGAAGAAGCTGACTTCTCCCCGGGAATGCAGACACCTTTCTTTCTTGCCCT
TCCAGGGCAGCAGGAGAGGGGAGAACGGAGGTCTAGGCTTTTCCCTGTCTCCCCGAGGCCAGGA
CAGTCTTCTCTGTTGGCCATGGAGTGTGACAGCTGTTCTACCGCCTGTGCTGGTAGGGAAACAG
CACTCCTTCCTGTTTGTCCTTTGAGTTGCCATGTATCCTGGGAGCTGCAGCCAGGCGTCTGGAC
CTAGATTCCAAGCCTGGGAGGCTGGCTGACGAAGTGGAGTGCATTCATATCCCAGGGAAGAGAT
GGGCTGTCCCGACCCACAGGTCTGTGGGGTTTTCCTGACTTGCATTGCATGTTGTCAGCGCCTG
CTCCTGTCACAGAGATGTCAGTGGGTGCCCTGGGAAGGGATTCTGTCTCGTCCCCATAGGTTCT
ATCATTAAAAGCGTCCTCACAAATG

hide sequence

RefSeq Acc Id:

XM_017597222 ⟹ XP_017452711

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,692 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,175 - 13,912,841 (+)	NCBI
Rnor_6.0	10	14,248,200 - 14,253,813 (+)	NCBI

Sequence:

show sequence

AGCCCGCCTTCGGCTGCCGGGCCAATGCAGCGCGGGGGCGGGGATTGTTTGCGTCGCGACCGGA
ACGGAAAGTGGGTCAGCCCGGGCGGAGCGCGTTGGCTGCAGGTCCTCTTCACTATGGCCCGGCG
TGCACGGAGTAGCAGGGCATGGCACTTTGTCCTGAGTGCAGCACGCCGAGATACAGATGCTCGA
GCTGTGGCTCTGGCAGGCAACTCTAACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCCG
ACTCTGACCCTGAGTACTCTTCCCTGCCACCATCCATCCCCAGTGCTGTGCCTGTGACAGGAGA
GTCCTTCTGTGACTGTGAGGGCCAGAATGAGGCTACCTTCTGCAACAGTTTACACACAGCACAC
CGTGGCAAGGACTGCCGTTGTGGTGAGGAGGATGAGGATTTTGATTGGGTATGGGATGACCTGA
ACAAGTCCTCAGCCACCTTGCTGAGCTGTGATAATCGAAAGGTTAGCTTTCACATGGAGTACAG
CTGTGGCACAGCAGCCATTCGGGGCACCAAGGAGCTAGGGGATGGCCAACACTTCTGGGAAATC
AAGATGACCTCTCCGGTGTATGGCACTGATATGATGGTGGGCATCGGGACATCAGACGTAGACC
TGGACAAGTACCACCACACGTTCTGCAGCCTGCTGGGCAGGGATGAAGACAGCTGGGGGCTCTC
CTACACGGGTAGGTGTTGCCTGGGCTATGGGTGGGGCTGGCAGTGCCACAGACCTCCCAGGCTC
ACACCTCTGCTCCTTACAGGGCTCCTCCACCACAAAGGCGACAAGACGAGCTTCTCTTCACGCT
TCGGCCAGGGCTCTATCATTGGCGTACACTTGGACACCTGGCATGGGACACTGACTTTTTTCAA
GAATAGGAAGTGCATAGGAGTGGCTGCCACTCGGCTTCAGAACAGAAGGTTCTACCCGATGGTC
TGCTCGACCGCCGCCAAGAGCAGCATGAAGGTCATTCGCTCCTGTGCCAGCTCCACATCCCTGC
AGTACCTGTGCTGCTACCGCCTGCGCCAGTTGCGGCCAGACTCAGGGGACACCCTCGAGGGCCT
GCCCTTGCCACCCGGCCTCAAGCAGGTGCTGCATAACAAGCTGGGCTGGGTCCTGAGCATGAAC
TGCAGCCACTGGACATCCCCTGCACCCCCTCCGGGCACAGCTGCCCCAGCCGCTGAGAGAGATT
CCCGGGAGACCAGGCCCTGTCAGAGGAAGCGCTGCCGAAGAAGCTGACTTCTCCCCGGGAATGC
AGACACCTTTCTTTCTTGCCCTTCCAGGGCAGCAGGAGAGGGGAGAACGGAGGTCTAGGCTTTT
CCCTGTCTCCCCGAGGCCAGGACAGTCTTCTCTGTTGGCCATGGAGTGTGACAGCTGTTCTACC
GCCTGTGCTGGTAGGGAAACAGCACTCCTTCCTGTTTGTCCTTTGAGTTGCCATGTATCCTGGG
AGCTGCAGCCAGGCGTCTGGACCTAGATTCCAAGCCTGGGAGGCTGGCTGACGAAGTGGAGTGC
ATTCATATCCCAGGGAAGAGATGGGCTGTCCCGACCCACAGGTCTGTGGGGTTTTCCTGACTTG
CATTGCATGTTGTCAGCGCCTGCTCCTGTCACAGAGATGTCAGTGGGTGCCCTGGGAAGGGATT
CTGTCTCGTCCCCATAGGTTCTATCATTAAAAGCGTCCTCACAAATG

hide sequence

RefSeq Acc Id:

XM_017597223 ⟹ XP_017452712

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,692 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,175 - 13,912,841 (+)	NCBI
Rnor_6.0	10	14,248,200 - 14,253,813 (+)	NCBI

Sequence:

show sequence

AGCCCGCCTTCGGCTGCCGGGCCAATGCAGCGCGGGGGCGGGGATTGTTTGCGTCGCGACCGGA
ACGGAAAGTGGGTCAGCCCGGGCGGAGCGCGTTGGCTGCAGGTCCTCTTCACTATGGCCCGGCG
TGCACGGAGTAGCAGGGCATGGCACTTTGTCCTGAGTGCAGCACGCCGAGATACAGATGCTCGA
GCTGTGGCTCTGGCAGGCAACTCTAACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCCG
ACTCTGACCCTGAGTACTCTTCCCTGCCACCATCCATCCCCAGTGCTGTGCCTGTGACAGGAGA
GTCCTTCTGTGACTGTGAGGGCCAGAATGAGGCTACCTTCTGCAACAGTTTACACACAGCACAC
CGTGGCAAGGACTGCCGTTGTGGTGAGGAGGATGAGGATTTTGATTGGGTATGGGATGACCTGA
ACAAGTCCTCAGCCACCTTGCTGAGCTGTGATAATCGAAAGGTTAGCTTTCACATGGAGTACAG
CTGTGGCACAGCAGCCATTCGGGGCACCAAGGAGCTAGGGGATGGCCAACACTTCTGGGAAATC
AAGATGACCTCTCCGGTGTATGGCACTGATATGATGGTGGGCATCGGGACATCAGACGTAGACC
TGGACAAGTACCACCACACGTTCTGCAGCCTGCTGGGCAGGGATGAAGACAGCTGGGGGCTCTC
CTACACGGGGCTCCTCCACCACAAAGGCGACAAGACGAGCTTCTCTTCACGCTTCGGCCAGGGC
TCTATCATTGGCGTACACTTGGACACCTGGCATGGGACACTGACTTTTTTCAAGAATAGGAAGT
GCATAGGAGTGGCTGCCACTCGGCTTCAGAACAGAAGGTTCTACCCGATGGTCTGCTCGACCGC
CGCCAAGAGCAGCATGAAGGTCATTCGCTCCTGTGCCAGCTCCACATCCCTGCAGTACCTGTGC
TGCTACCGCCTGCGCCAGTTGCGGCCAGACTCAGGGGACACCCTCGAGGGCCTGCCCTTGCCAC
CCGGCCTCAAGCAGGTGCTGCATAACAAGCTGGGCTGGGTCCTGAGCATGAACTGCAGCCACTG
GACATCCCCTGCACCCCCTCCGGGCACAGCTGCCCCAGCCGCTGAGAGAGATTCCCGGGAGACC
AGGCCCTGTCAGAGGAAGCGCTGCCGAAGAAGCTGACTTCTCCCCGGGAATGCAGACACCTTTC
TTTCTTGCCCTTCCAGGGCAGCAGGAGAGGGGAGAACGGAGGTCTAGGCTTTTCCCTGTCTCCC
CGAGGCCAGGACAGTCTTCTCTGTTGGCCATGGAGTGTGACAGCTGTTCTACCGCCTGTGCTGG
TAGGGAAACAGCACTCCTTCCTGTTTGTCCTTTGAGTTGCCATGTATCCTGGGAGCTGCAGCCA
GGCGTCTGGACCTAGATTCCAAGCCTGGGAGGCTGGCTGACGAAGTGGAGTGCATTCATATCCC
AGGGAAGAGATGGGCTGTCCCGACCCACAGGTCTGTGGGGTTTTCCTGACTTGCATTGCATGTT
GTCAGCGCCTGCTCCTGTCACAGAGATGTCAGTGGGTGCCCTGGGAAGGGATTCTGTCTCGTCC
CCATAGGTTCTATCATTAAAAGCGTCCTCACAAATG

hide sequence

RefSeq Acc Id:

XM_017597224 ⟹ XP_017452713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,853 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,687 - 13,912,841 (+)	NCBI
Rnor_6.0	10	14,248,656 - 14,253,813 (+)	NCBI

Sequence:

show sequence

TAGTACTGTGGGTCTGCAGGAGACAGGAGGCAGTTAGGACAGAGTCGACTATTACACCCAGACA
GTCCACTCAGGAGAGGAGATCCAGACCTCCCAATGCCTTTACTTTTGTCCCAAGAACGACGTCA
AGCCCGTGAGTTTAAGGTCCTCTTCACTATGGCCCGGCGTGCACGGAGTAGCAGGGCATGGCAC
TTTGTCCTGAGTGCAGCACGCCGAGATACAGATGCTCGAGCTGTGGCTCTGGCAGGCAACTCTA
ACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCCGACTCTGACCCTGAGTACTCTTCCCT
GCCACCATCCATCCCCAGTGCTGTGCCTGTGACAGGAGAGTCCTTCTGTGACTGTGAGGGCCAG
AATGAGGCTACCTTCTGCAACAGTTTACACACAGCACACCGTGGCAAGGACTGCCGTTGTGGTG
AGGAGGATGAGGGTGAGTGTCTTGCCGTAGGGACGTGTGCAGGGCTGGGCAGGTTCTCTGGGTT
GGAAGGCTCCACTTTGCTCTGCCCCTCCCTAGTCTGGGCCTTCTATCCTACAGATTTTGATTGG
GTATGGGATGACCTGAACAAGTCCTCAGCCACCTTGCTGAGCTGTGATAATCGAAAGGTTAGCT
TTCACATGGAGTACAGCTGTGGCACAGCAGCCATTCGGGGCACCAAGGAGCTAGGGGATGGCCA
ACACTTCTGGGAAATCAAGATGACCTCTCCGGTGTATGGCACTGATATGATGGTGGGCATCGGG
ACATCAGACGTAGACCTGGACAAGTACCACCACACGTTCTGCAGCCTGCTGGGCAGGGATGAAG
ACAGCTGGGGGCTCTCCTACACGGGTAGGTGTTGCCTGGGCTATGGGTGGGGCTGGCAGTGCCA
CAGACCTCCCAGGCTCACACCTCTGCTCCTTACAGGGCTCCTCCACCACAAAGGCGACAAGACG
AGCTTCTCTTCACGCTTCGGCCAGGGCTCTATCATTGGCGTACACTTGGACACCTGGCATGGGA
CACTGACTTTTTTCAAGAATAGGAAGTGCATAGGAGTGGCTGCCACTCGGCTTCAGAACAGAAG
GTTCTACCCGATGGTCTGCTCGACCGCCGCCAAGAGCAGCATGAAGGTCATTCGCTCCTGTGCC
AGCTCCACATCCCTGCAGTACCTGTGCTGCTACCGCCTGCGCCAGTTGCGGCCAGACTCAGGGG
ACACCCTCGAGGGCCTGCCCTTGCCACCCGGCCTCAAGCAGGTGCTGCATAACAAGCTGGGCTG
GGTCCTGAGCATGAACTGCAGCCACTGGACATCCCCTGCACCCCCTCCGGGCACAGCTGCCCCA
GCCGCTGAGAGAGATTCCCGGGAGACCAGGCCCTGTCAGAGGAAGCGCTGCCGAAGAAGCTGAC
TTCTCCCCGGGAATGCAGACACCTTTCTTTCTTGCCCTTCCAGGGCAGCAGGAGAGGGGAGAAC
GGAGGTCTAGGCTTTTCCCTGTCTCCCCGAGGCCAGGACAGTCTTCTCTGTTGGCCATGGAGTG
TGACAGCTGTTCTACCGCCTGTGCTGGTAGGGAAACAGCACTCCTTCCTGTTTGTCCTTTGAGT
TGCCATGTATCCTGGGAGCTGCAGCCAGGCGTCTGGACCTAGATTCCAAGCCTGGGAGGCTGGC
TGACGAAGTGGAGTGCATTCATATCCCAGGGAAGAGATGGGCTGTCCCGACCCACAGGTCTGTG
GGGTTTTCCTGACTTGCATTGCATGTTGTCAGCGCCTGCTCCTGTCACAGAGATGTCAGTGGGT
GCCCTGGGAAGGGATTCTGTCTCGTCCCCATAGGTTCTATCATTAAAAGCGTCCTCACAAATG

hide sequence

RefSeq Acc Id:

XM_017597227 ⟹ XP_017452716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,412,230 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,334 - 13,912,841 (+)	NCBI
Rnor_6.0	10	14,248,311 - 14,253,813 (+)	NCBI

Sequence:

show sequence

CGCGCCGGCCTAGCCCGGCCAGGCCCGGCGGGCGGCGCGTTGACCTTGCGGGCGGTCAAACCGG
CCACCCGTTTTTCCCTGGCGGTGGCGCTCGGGAGTCTGGGTGGGGGCCTCGGAGCCAGGGGCCA
CGGACTGCATCACGGTAGAGAGATTCGCGAGCCTCAGGCGAGGGACGCAACCTCCAGCTCCGCG
GAGACCGAGGGTGGCCACGTCCAGGGACATCTCCGGTTCATTCATTGGGTTCCTACTGTGTGCT
CTTATACGGCGCTCAGCCAGCCCAACTGATGTGGAGTGCTGTGCGCGGCCCTGCTAGGCTTCTT
TGTGGATGGCCGGGGCGAGGTAGGGTAGTACTGTGGGTCTGCAGGAGACAGGAGGCAGTTAGGA
CAGAGTCGACTATTACACCCAGACAGTCCACTCAGGAGAGGAGATCCAGACCTCCCAATGCCTT
TACTTTTGTCCCAAGAACGACGTCAAGCCCGTCCTCTTCACTATGGCCCGGCGTGCACGGAGTA
GCAGGGCATGGCACTTTGTCCTGAGTGCAGCACGCCGAGATACAGATGCTCGAGCTGTGGCTCT
GGCAGGCAACTCTAACTGGGGCTACGACTCTGATGGGCAGCACAGCGACTCCGACTCTGACCCT
GAGTACTCTTCCCTGCCACCATCCATCCCCAGTGCTGTGCCTGTGACAGGAGAGTCCTTCTGTG
ACTGTGAGGGCCAGAATGAGGCTACCTTCTGCAACAGTTTACACACAGCACACCGTGGCAAGGA
CTGCCGTTGTGGTGAGGAGGATGAGGGTGAGTGTCTTGCCGTAGGGACGTGTGCAGGGCTGGGC
AGGTTCTCTGGGTTGGAAGGCTCCACTTTGCTCTGCCCCTCCCTAGTCTGGGCCTTCTATCCTA
CAGATTTTGATTGGGTATGGGATGACCTGAACAAGTCCTCAGCCACCTTGCTGAGCTGTGATAA
TCGAAAGGTTAGCTTTCACATGGAGTACAGCTGTGGCACAGCAGCCATTCGGGGCACCAAGGAG
CTAGGGGATGGCCAACACTTCTGGGAAATCAAGATGACCTCTCCGGTGTATGGCACTGATATGA
TGGTGGGCATCGGGACATCAGACGTAGACCTGGACAAGTACCACCACACGTTCTGCAGCCTGCT
GGGCAGGGATGAAGACAGCTGGGGGCTCTCCTACACGGGTAGGTGTTGCCTGGGCTATGGGTGG
GGCTGGCAGTGCCACAGACCTCCCAGGCTCACACCTCTGCTCCTTACAGGGCTCCTCCACCACA
AAGGCGACAAGACGAGCTTCTCTTCACGCTTCGGCCAGGGCTCTATCATTGGCGTACACTTGGA
CACCTGGCATGGGACACTGACTTTTTTCAAGAATAGGAAGTGCATAGGAGTGGCTGCCACTCGG
CTTCAGAACAGAAGGTTCTACCCGATGGTCTGCTCGACCGCCGCCAAGAGCAGCATGAAGGTCA
TTCGCTCCTGTGCCAGCTCCACATCCCTGCAGTACCTGTGCTGCTACCGCCTGCGCCAGTTGCG
GCCAGACTCAGGGGACACCCTCGAGGGCCTGCCCTTGCCACCCGGCCTCAAGCAGGTGCTGCAT
AACAAGCTGGGCTGGGTCCTGAGCATGAACTGCAGCCACTGGACATCCCCTGCACCCCCTCCGG
GCACAGCTGCCCCAGCCGCTGAGAGAGATTCCCGGGAGACCAGGCCCTGTCAGAGGAAGCGCTG
CCGAAGAAGCTGACTTCTCCCCGGGAATGCAGACACCTTTCTTTCTTGCCCTTCCAGGGCAGCA
GGAGAGGGGAGAACGGAGGTCTAGGCTTTTCCCTGTCTCCCCGAGGCCAGGACAGTCTTCTCTG
TTGGCCATGGAGTGTGACAGCTGTTCTACCGCCTGTGCTGGTAGGGAAACAGCACTCCTTCCTG
TTTGTCCTTTGAGTTGCCATGTATCCTGGGAGCTGCAGCCAGGCGTCTGGACCTAGATTCCAAG
CCTGGGAGGCTGGCTGACGAAGTGGAGTGCATTCATATCCCAGGGAAGAGATGGGCTGTCCCGA
CCCACAGGTCTGTGGGGTTTTCCTGACTTGCATTGCATGTTGTCAGCGCCTGCTCCTGTCACAG
AGATGTCAGTGGGTGCCCTGGGAAGGGATTCTGTCTCGTCCCCATAGGTTCTATCATTAAAAGC
GTCCTCACAAATG

hide sequence

RefSeq Acc Id:

XM_039085867 ⟹ XP_038941795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,709 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,192 - 13,912,841 (+)	NCBI

RefSeq Acc Id:

XM_039085870 ⟹ XP_038941798

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,412,257 - 14,417,357 (+)	NCBI
mRatBN7.2	10	13,907,690 - 13,912,841 (+)	NCBI

RefSeq Acc Id:

XM_063268918 ⟹ XP_063124988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,692 - 14,417,357 (+)	NCBI

RefSeq Acc Id:

XM_063268919 ⟹ XP_063124989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,411,845 - 14,417,357 (+)	NCBI

RefSeq Acc Id:

XM_063268920 ⟹ XP_063124990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	14,415,626 - 14,417,357 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100458	(Get FASTA)	NCBI Sequence Viewer
	XP_017452710	(Get FASTA)	NCBI Sequence Viewer
	XP_017452711	(Get FASTA)	NCBI Sequence Viewer
	XP_017452712	(Get FASTA)	NCBI Sequence Viewer
	XP_017452713	(Get FASTA)	NCBI Sequence Viewer
	XP_017452716	(Get FASTA)	NCBI Sequence Viewer
	XP_038941795	(Get FASTA)	NCBI Sequence Viewer
	XP_038941798	(Get FASTA)	NCBI Sequence Viewer
	XP_063124988	(Get FASTA)	NCBI Sequence Viewer
	XP_063124989	(Get FASTA)	NCBI Sequence Viewer
	XP_063124990	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM03887	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020733
	ENSRNOP00000020733.5
	ENSRNOP00000071059
	ENSRNOP00000071059.2
	ENSRNOP00000101037
	ENSRNOP00000112142

RefSeq Acc Id:

NP_001100458 ⟸ NM_001106988

- UniProtKB:

A6HCY2 (UniProtKB/TrEMBL), A0A0G2JZI4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGWGTSKVMGVWVVFHTITLGLIEELRYWSQVLFTMARRARSSRAWHFVLSAARRDTDARAVAL
AGNSNWGYDSDGQHSDSDSDPEYSSLPPSIPSAVPVTGESFCDCEGQNEATFCNSLHTAHRGKD
CRCGEEDEDFDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRGTKELGDGQHFWEIKMTS
PVYGTDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIG
VHLDTWHGTLTFFKNRKCIGVAATRLQNRRFYPMVCSTAAKSSMKVIRSCASSTSLQYLCCYRL
RQLRPDSGDTLEGLPLPPGLKQVLHNKLGWVLSMNCSHWTSPAPPPGTAAPAAERDSRETRPCQ
RKRCRRS

hide sequence

RefSeq Acc Id:

XP_017452710 ⟸ XM_017597221

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQRGGGDCLRRDRNGKWVSPGGARWLQVLFTMARRARSSRAWHFVLSAARRDTDARAVALAGNS
NWGYDSDGQHSDSDSDPEYSSLPPSIPSAVPVTGESFCDCEGQNEATFCNSLHTAHRGKDCRCG
EEDEGECLAVGTCAGLGRFSGLEGSTLLCPSLVWAFYPTDFDWVWDDLNKSSATLLSCDNRKVS
FHMEYSCGTAAIRGTKELGDGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYHHTFCSLLGRDE
DSWGLSYTGRCCLGYGWGWQCHRPPRLTPLLLTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWHG
TLTFFKNRKCIGVAATRLQNRRFYPMVCSTAAKSSMKVIRSCASSTSLQYLCCYRLRQLRPDSG
DTLEGLPLPPGLKQVLHNKLGWVLSMNCSHWTSPAPPPGTAAPAAERDSRETRPCQRKRCRRS

hide sequence

RefSeq Acc Id:

XP_017452711 ⟸ XM_017597222

- Peptide Label:

isoform X6

- Sequence:

show sequence

MQRGGGDCLRRDRNGKWVSPGGARWLQVLFTMARRARSSRAWHFVLSAARRDTDARAVALAGNS
NWGYDSDGQHSDSDSDPEYSSLPPSIPSAVPVTGESFCDCEGQNEATFCNSLHTAHRGKDCRCG
EEDEDFDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRGTKELGDGQHFWEIKMTSPVYG
TDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYTGRCCLGYGWGWQCHRPPRLTPLLLTGL
LHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAATRLQNRRFYPMVCSTAAKSS
MKVIRSCASSTSLQYLCCYRLRQLRPDSGDTLEGLPLPPGLKQVLHNKLGWVLSMNCSHWTSPA
PPPGTAAPAAERDSRETRPCQRKRCRRS

hide sequence

RefSeq Acc Id:	XP_017452712 ⟸ XM_017597223
- Peptide Label:	isoform X7
- UniProtKB:	A0A0G2JZI4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQRGGGDCLRRDRNGKWVSPGGARWLQVLFTMARRARSSRAWHFVLSAARRDTDARAVALAGNS NWGYDSDGQHSDSDSDPEYSSLPPSIPSAVPVTGESFCDCEGQNEATFCNSLHTAHRGKDCRCG EEDEDFDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRGTKELGDGQHFWEIKMTSPVYG TDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLD TWHGTLTFFKNRKCIGVAATRLQNRRFYPMVCSTAAKSSMKVIRSCASSTSLQYLCCYRLRQLR PDSGDTLEGLPLPPGLKQVLHNKLGWVLSMNCSHWTSPAPPPGTAAPAAERDSRETRPCQRKRC RRS hide sequence

RefSeq Acc Id:

XP_017452716 ⟸ XM_017597227

- Peptide Label:

isoform X5

- Sequence:

show sequence

MARRARSSRAWHFVLSAARRDTDARAVALAGNSNWGYDSDGQHSDSDSDPEYSSLPPSIPSAVP
VTGESFCDCEGQNEATFCNSLHTAHRGKDCRCGEEDEGECLAVGTCAGLGRFSGLEGSTLLCPS
LVWAFYPTDFDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRGTKELGDGQHFWEIKMTS
PVYGTDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYTGRCCLGYGWGWQCHRPPRLTPLL
LTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAATRLQNRRFYPMVCSTA
AKSSMKVIRSCASSTSLQYLCCYRLRQLRPDSGDTLEGLPLPPGLKQVLHNKLGWVLSMNCSHW
TSPAPPPGTAAPAAERDSRETRPCQRKRCRRS

hide sequence

RefSeq Acc Id:

XP_017452713 ⟸ XM_017597224

- Peptide Label:

isoform X2

- Sequence:

show sequence

MPLLLSQERRQAREFKVLFTMARRARSSRAWHFVLSAARRDTDARAVALAGNSNWGYDSDGQHS
DSDSDPEYSSLPPSIPSAVPVTGESFCDCEGQNEATFCNSLHTAHRGKDCRCGEEDEGECLAVG
TCAGLGRFSGLEGSTLLCPSLVWAFYPTDFDWVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAA
IRGTKELGDGQHFWEIKMTSPVYGTDMMVGIGTSDVDLDKYHHTFCSLLGRDEDSWGLSYTGRC
CLGYGWGWQCHRPPRLTPLLLTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCI
GVAATRLQNRRFYPMVCSTAAKSSMKVIRSCASSTSLQYLCCYRLRQLRPDSGDTLEGLPLPPG
LKQVLHNKLGWVLSMNCSHWTSPAPPPGTAAPAAERDSRETRPCQRKRCRRS

hide sequence

Ensembl Acc Id:

ENSRNOP00000071059 ⟸ ENSRNOT00000077689

Ensembl Acc Id:

ENSRNOP00000020733 ⟸ ENSRNOT00000020733

RefSeq Acc Id:	XP_038941795 ⟸ XM_039085867
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038941798 ⟸ XM_039085870
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JZI4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124988 ⟸ XM_063268918
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063124989 ⟸ XM_063268919
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2JZI4 (UniProtKB/TrEMBL), D3ZVU8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063124990 ⟸ XM_063268920
- Peptide Label:	isoform X9

Protein Domains

B30.2/SPRY SOCS box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZVU8-F1-model_v2	AlphaFold	D3ZVU8	1-391	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310936	AgrOrtholog
BioCyc Gene	G2FUF-25816	BioCyc
Ensembl Genes	ENSRNOG00000015300	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020733	ENTREZGENE
	ENSRNOT00000020733.6	UniProtKB/TrEMBL
	ENSRNOT00000077689	ENTREZGENE
	ENSRNOT00000077689.2	UniProtKB/TrEMBL
	ENSRNOT00000131934	ENTREZGENE
	ENSRNOT00000173598	ENTREZGENE
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
InterPro	B30.2/SPRY_sf	UniProtKB/TrEMBL
	B302	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	FBXO45-Fsn/SPSB_families	UniProtKB/TrEMBL
	SOCS_C	UniProtKB/TrEMBL
	SPRY_rcpt	UniProtKB/TrEMBL
	SPRY_SPSB3	UniProtKB/TrEMBL
KEGG Report	rno:302981	UniProtKB/TrEMBL
NCBI Gene	302981	ENTREZGENE
PANTHER	SPRY DOMAIN CONTAINING SOCS BOX PROTEIN	UniProtKB/TrEMBL
	SPRY DOMAIN-CONTAINING SOCS BOX PROTEIN 3	UniProtKB/TrEMBL
Pfam	SPRY	UniProtKB/TrEMBL
PhenoGen	Spsb3	PhenoGen
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	SOCS	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000015300	RatGTEx
SMART	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
UniProt	A0A0G2JZI4	ENTREZGENE, UniProtKB/TrEMBL
	A6HCY2	ENTREZGENE, UniProtKB/TrEMBL
	D3ZVU8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	Spsb3_predicted	splA/ryanodine receptor domain and SOCS box containing 3 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Spsb3_predicted	splA/ryanodine receptor domain and SOCS box containing 3 (predicted)	Tce1_predicted	T-complex expressed gene 1 (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-12	Tce1_predicted	T-complex expressed gene 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar