Elob (elongin B) - Rat Genome Database

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Gene: Elob (elongin B) Rattus norvegicus
Analyze
Symbol: Elob
Name: elongin B
RGD ID: 621200
Description: Enables transcription coactivator activity. Involved in positive regulation of transcription by RNA polymerase II. Part of VCB complex and transcription regulator complex. Orthologous to human ELOB (elongin B); PARTICIPATES IN hypoxia inducible factor pathway; renal cell carcinoma pathway; ubiquitin/proteasome degradation pathway; INTERACTS WITH 1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: elongin 18 kDa subunit; elongin-B; RNA polymerase II transcription factor SIII subunit B; SIII p18; Tceb2; transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B); transcription elongation factor B (SIII), polypeptide 2; transcription elongation factor B polypeptide 2; transcription elongation factor B subunit 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Elob-ps16   Elob-ps4   Elobl7  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,353,413 - 13,358,484 (-)NCBIGRCr8
mRatBN7.21012,848,830 - 12,853,897 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,848,827 - 12,853,635 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,593,367 - 17,598,176 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,082,157 - 17,086,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,581,606 - 12,586,407 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,163,032 - 13,168,217 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,163,036 - 13,168,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,983,021 - 12,988,202 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,084,817 - 13,089,619 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,084,816 - 13,089,619 (-)NCBI
Celera1012,543,770 - 12,548,500 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
6-propyl-2-thiouracil  (EXP)
actinomycin D  (ISO)
afimoxifene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
decabromodiphenyl ether  (ISO)
dibutyl phthalate  (ISO)
dinophysistoxin 1  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
flavonoids  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
hydralazine  (ISO)
ivermectin  (ISO)
methimazole  (EXP)
N-nitrosodiethylamine  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
p-toluidine  (EXP)
quercetin  (ISO)
raloxifene  (ISO)
rotenone  (EXP,ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tert-butyl hydroperoxide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP)
thiram  (ISO)
triadimefon  (EXP)
triphenyl phosphate  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
versicolorin A  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. RNA polymerase II transcription factor SIII. I. Identification, purification, and properties. Bradsher JN, etal., J Biol Chem 1993 Dec 5;268(34):25587-93.
2. Positive regulation of general transcription factor SIII by a tailed ubiquitin homolog. Garrett KP, etal., Proc Natl Acad Sci U S A 1995 Aug 1;92(16):7172-6.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rbx1, a component of the VHL tumor suppressor complex and SCF ubiquitin ligase. Kamura T, etal., Science. 1999 Apr 23;284(5414):657-61.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Regulation of oxygen homeostasis by hypoxia-inducible factor 1. Semenza GL Physiology (Bethesda). 2009 Apr;24:97-106.
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:9341197   PMID:10224134   PMID:11384984   PMID:12149480   PMID:15489334   PMID:16498413   PMID:17636018   PMID:19037258   PMID:23376485   PMID:25931508  


Genomics

Comparative Map Data
Elob
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,353,413 - 13,358,484 (-)NCBIGRCr8
mRatBN7.21012,848,830 - 12,853,897 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,848,827 - 12,853,635 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1017,593,367 - 17,598,176 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01017,082,157 - 17,086,966 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01012,581,606 - 12,586,407 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01013,163,032 - 13,168,217 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1013,163,036 - 13,168,217 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01012,983,021 - 12,988,202 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41013,084,817 - 13,089,619 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11013,084,816 - 13,089,619 (-)NCBI
Celera1012,543,770 - 12,548,500 (-)NCBICelera
Cytogenetic Map10q12NCBI
ELOB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38162,771,414 - 2,777,280 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl162,771,414 - 2,777,289 (-)EnsemblGRCh38hg38GRCh38
GRCh37162,821,415 - 2,827,281 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36162,761,416 - 2,767,298 (-)NCBINCBI36Build 36hg18NCBI36
Build 34162,761,416 - 2,767,298NCBI
Celera163,020,982 - 3,026,862 (-)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef162,788,655 - 2,794,449 (-)NCBIHuRef
CHM1_1162,821,459 - 2,827,327 (-)NCBICHM1_1
T2T-CHM13v2.0162,791,632 - 2,797,493 (-)NCBIT2T-CHM13v2.0
Elob
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391724,043,714 - 24,048,083 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1724,043,712 - 24,048,110 (-)EnsemblGRCm39 Ensembl
GRCm381723,824,740 - 23,829,109 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1723,824,738 - 23,829,136 (-)EnsemblGRCm38mm10GRCm38
MGSCv371723,961,707 - 23,966,076 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361723,552,362 - 23,556,731 (-)NCBIMGSCv36mm8
Celera1724,319,126 - 24,323,354 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
Elob
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544214,498,725 - 14,502,135 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544214,498,666 - 14,501,895 (-)NCBIChiLan1.0ChiLan1.0
LOC100994395
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29130,712,809 - 130,715,006 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111131,823,544 - 131,825,750 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011124,845,027 - 124,845,900 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111128,739,322 - 128,739,795 (-)NCBIpanpan1.1PanPan1.1panPan2
ELOB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1638,311,082 - 38,314,502 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl638,311,082 - 38,314,508 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha639,550,949 - 39,555,552 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0638,621,326 - 38,625,930 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1638,306,971 - 38,311,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0638,279,439 - 38,284,038 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0638,755,571 - 38,760,174 (-)NCBIUU_Cfam_GSD_1.0
Elob
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344105,408,280 - 105,412,743 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366941,296,782 - 1,300,149 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366941,296,304 - 1,301,183 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELOB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl339,293,746 - 39,298,097 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1339,294,099 - 39,298,192 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,632,303 - 40,636,398 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELOB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.152,564,662 - 2,570,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606828,342,826 - 28,349,254 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elob
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624824590,334 - 596,494 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624824590,541 - 593,704 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Elob
20 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:32
Interacting mature miRNAs:35
Transcripts:ENSRNOT00000006892
Prediction methods:Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10129497586Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat

Markers in Region
RH129535  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21012,848,458 - 12,848,670 (+)MAPPERmRatBN7.2
Rnor_6.01013,162,665 - 13,162,876NCBIRnor6.0
Rnor_5.01012,982,650 - 12,982,861UniSTSRnor5.0
RGSC_v3.41013,084,446 - 13,084,657UniSTSRGSC3.4
Celera1012,543,399 - 12,543,610UniSTS
RH 3.4 Map10143.67UniSTS
Cytogenetic Map10q12UniSTS
RH137181  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21012,848,480 - 12,848,669 (+)MAPPERmRatBN7.2
Rnor_6.01013,162,687 - 13,162,875NCBIRnor6.0
Rnor_5.01012,982,672 - 12,982,860UniSTSRnor5.0
RGSC_v3.41013,084,468 - 13,084,656UniSTSRGSC3.4
Celera1012,543,421 - 12,543,609UniSTS
Cytogenetic Map10q12UniSTS
TCEB2_3482  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21012,848,707 - 12,849,002 (+)MAPPERmRatBN7.2
Rnor_6.01013,162,914 - 13,163,208NCBIRnor6.0
Rnor_5.01012,982,899 - 12,983,193UniSTSRnor5.0
RGSC_v3.41013,084,695 - 13,084,989UniSTSRGSC3.4
Celera1012,543,648 - 12,543,942UniSTS
Cytogenetic Map10q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000006892   ⟹   ENSRNOP00000006892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1013,163,093 - 13,167,690 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087768   ⟹   ENSRNOP00000072621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1012,848,827 - 12,853,548 (-)Ensembl
Rnor_6.0 Ensembl1013,163,036 - 13,168,217 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094703   ⟹   ENSRNOP00000078931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1012,851,613 - 12,853,635 (-)Ensembl
RefSeq Acc Id: NM_031129   ⟹   NP_112391
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,353,417 - 13,358,218 (-)NCBI
mRatBN7.21012,848,830 - 12,853,631 (-)NCBI
Rnor_6.01013,163,036 - 13,168,217 (-)NCBI
Rnor_5.01012,983,021 - 12,988,202 (-)NCBI
RGSC_v3.41013,084,817 - 13,089,619 (-)RGD
Celera1012,543,770 - 12,548,500 (-)RGD
Sequence:
RefSeq Acc Id: XM_063269956   ⟹   XP_063126026
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,353,413 - 13,358,484 (-)NCBI
RefSeq Acc Id: XM_063269957   ⟹   XP_063126027
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,355,614 - 13,358,484 (-)NCBI
RefSeq Acc Id: XM_063269958   ⟹   XP_063126028
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,355,492 - 13,358,484 (-)NCBI
RefSeq Acc Id: NP_112391   ⟸   NM_031129
- UniProtKB: P62870 (UniProtKB/Swiss-Prot),   A0A8L2R5Z8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006892   ⟸   ENSRNOT00000006892
Ensembl Acc Id: ENSRNOP00000072621   ⟸   ENSRNOT00000087768
Ensembl Acc Id: ENSRNOP00000078931   ⟸   ENSRNOT00000094703
RefSeq Acc Id: XP_063126026   ⟸   XM_063269956
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126028   ⟸   XM_063269958
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126027   ⟸   XM_063269957
- Peptide Label: isoform X2
Protein Domains
Ubiquitin-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62870-F1-model_v2 AlphaFold P62870 1-118 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696997
Promoter ID:EPDNEW_R7522
Type:initiation region
Name:Elob_1
Description:elongin B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01013,168,215 - 13,168,275EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621200 AgrOrtholog
BioCyc Gene G2FUF-25903 BioCyc
Ensembl Genes ENSRNOG00000004814 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000087768.2 UniProtKB/TrEMBL
  ENSRNOT00000094703.1 UniProtKB/TrEMBL
Gene3D-CATH Phosphatidylinositol 3-kinase Catalytic Subunit, Chain A, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6921630 IMAGE-MGC_LOAD
InterPro ELOB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/Swiss-Prot
KEGG Report rno:81807 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72785 IMAGE-MGC_LOAD
NCBI Gene 81807 ENTREZGENE
PANTHER ELONGIN B UniProtKB/TrEMBL
  ELONGIN-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13248 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ubiquitin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Elob PhenoGen
PROSITE UBIQUITIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004814 RatGTEx
SMART UBQ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZLR5_RAT UniProtKB/TrEMBL
  A0A8L2R5Z8 ENTREZGENE, UniProtKB/TrEMBL
  ELOB_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q63529 UniProtKB/Swiss-Prot
  Q80W20 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-11-09 Elob  elongin B  Tceb2  transcription elongation factor B subunit 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-03-16 Tceb2  transcription elongation factor B subunit 2  Tceb2  transcription elongation factor B (SIII), polypeptide 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2004-12-14 Tceb2  transcription elongation factor B (SIII), polypeptide 2  TCEB2  transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B)  Symbol and Name updated 1299863 APPROVED
2002-08-07 TCEB2  transcription elongation factor B (SIII) polypeptide 2 (18kD, elongin B)      Symbol and Name status set to provisional 70820 PROVISIONAL