Pglyrp1 (peptidoglycan recognition protein 1)

Gene: Pglyrp1 (peptidoglycan recognition protein 1) Rattus norvegicus

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Symbol:

Pglyrp1

Name:

peptidoglycan recognition protein 1

Description:

Predicted to have N-acetylmuramoyl-L-alanine amidase activity; peptidoglycan binding activity; and peptidoglycan receptor activity. Involved in regulation of circadian sleep/wake cycle, sleep. Predicted to localize to the extracellular space. Orthologous to human PGLYRP1 (peptidoglycan recognition protein 1); INTERACTS WITH ammonium chloride; bisphenol A; flavonoids.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

peptidoglycan recognition protein; Pglyrp; Pgrp; PGRP-S

Orthologs:

Homo sapiens (human) : PGLYRP1 (peptidoglycan recognition protein 1) HGNC Alliance
Mus musculus (house mouse) : Pglyrp1 (peptidoglycan recognition protein 1) MGI Alliance
Chinchilla lanigera (long-tailed chinchilla) : Pglyrp1 (peptidoglycan recognition protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PGLYRP1 (peptidoglycan recognition protein 1)
Canis lupus familiaris (dog) : PGLYRP1 (peptidoglycan recognition protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Pglyrp1 (peptidoglycan recognition protein 1)
Sus scrofa (pig) : PGLYRP1 (peptidoglycan recognition protein 1)

more info ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PGLYRP1 (peptidoglycan recognition protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pglyrp1 (peptidoglycan recognition protein 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Pglyrp1 (peptidoglycan recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PGLYRP1 (peptidoglycan recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PGLYRP1 (peptidoglycan recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pglyrp1 (peptidoglycan recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PGLYRP1 (peptidoglycan recognition protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Pglyrp1 (peptidoglycan recognition protein 1)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Homo sapiens (human):	PGLYRP1 (peptidoglycan recognition protein 1)	Alliance	DIOPT (Ensembl Compara, HGNC, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	pglyrp5 (peptidoglycan recognition protein 5)	Alliance	DIOPT (Ensembl Compara, Hieranoid, OMA, OrthoFinder, PANTHER, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-LC	Alliance	DIOPT (Ensembl Compara, OrthoInspector, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-SA	Alliance	DIOPT (OrthoFinder, OrthoInspector, PANTHER, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-SB1	Alliance	DIOPT (Ensembl Compara, InParanoid, OrthoFinder, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-SC1a	Alliance	DIOPT (Ensembl Compara, OMA, OrthoFinder, PANTHER, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-SC1b	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-SC2	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, TreeFam)
Drosophila melanogaster (fruit fly):	PGRP-SD	Alliance	DIOPT (Ensembl Compara, OrthoFinder, TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	1	79,790,879 - 79,796,064 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	81,052,612 - 81,057,412 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	78,235,474 - 78,240,665 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	78,313,584 - 78,318,776 (+)	NCBI
Celera	1	72,998,755 - 73,003,829 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

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Disease Annotations

Gene-Chemical Interaction Annotations

Gene Ontology Annotations

References - curated

References - uncurated

RGD Disease Portals

Genomics

Comparative Map Data

QTLs in Region (Rnor_6.0)

miRNA Target Status

Sequence

Nucleotide Sequences

Protein Sequences

Transcriptome

Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links

Nomenclature History

RGD Curation Notes

More on Pglyrp1
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	621429
Created:	2002-08-06
Species:	Rattus norvegicus
Last Modified:	2019-04-23
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Gene Enrichment unavailable	Ortholog Finder unavailable
Gene Enrichment	Ortholog Finder

Imported Annotations - CTD