Cia2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Cia2 (Collagen induced arthritis QTL 2) Rattus norvegicus

Symbol: Cia2
Name: Collagen induced arthritis QTL 2
RGD ID: 61433
Also known as: Type II Collagen induced arthritis QTL 2
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: joint inflammation composite score   (CMO:0000919)    
LOD Score: 5.0
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2178,430,754 - 91,209,302RGD_MAPPER_PIPELINE
Rnor_6.0179,689,765 - 94,909,507RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0180,946,391 - 96,008,597RGDRnor5.0
RGSC_v3.4133,153,323 - 78,153,323RGDRGSC3.4
RGSC_v3.1133,231,434 - 78,231,434RGD
Cross Type: F2
Strains Crossed: F344/NHsd DA/Bkl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Tgfbr1 is a candidate Gene for Cia2
Pkrcg is a candidate Gene for Cia2

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
DA/Bkl  (IEA)
F344/NHsd  (IEA)

References

Related QTLs

Related QTL Description Reference
Pia36 maps to same region RGD:2302026


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2334Psg19pregnancy specific glycoprotein 1917968019479690460Rat
7698003LOC102557319carcinoembryonic antigen-related cell adhesion molecule 3-like17969860179708808Rat
7730631LOC102557362peptidyl-prolyl cis-trans isomerase FKBP1A-like17972882679730275Rat
1594536LOC308401similar to WD-repeat protein 1317973028279731964Rat
2323908LOC100362871hypothetical LOC10036287117974410579749985Rat
1564508MicbMHC class I polypeptide-related sequence B17975458779772092Rat
9136192LOC103691048uncharacterized LOC10369104817978132579788441Rat
621429Pglyrp1peptidoglycan recognition protein 117979087979796064Rat
1307390Ccdc61coiled-coil domain containing 6117979655779816536Rat
1308032Nova2NOVA alternative splicing regulator 217983173779866147Rat
1562436Nanos2nanos C2HC-type zinc finger 217989445079895910Rat
1565160MypopMyb-related transcription factor, partner of profilin17989849279909336Rat
1308312Irf2bp1interferon regulatory factor 2 binding protein 117991151679914217Rat
2809Foxa3forkhead box A317992129279930219Rat
1306735Sympksymplekin17993109779959461Rat
1306786Rsph6aradial spoke head 6 homolog A17995955579979217Rat
9123562LOC103691057hematological and neurological expressed 1 protein pseudogene17996229379966452Rat
11393200LOC108349062uncharacterized LOC10834906217997289979981277Rat
1594179DmwdDM1 locus, WD repeat containing17998127079987997Rat
1309825DmpkDM1 protein kinase17998809679999358Rat
1305040Six5SIX homeobox 518000010680005303Rat
7528935Meiosinmeiosis initiator18000448180028841Rat
1308393Fbxo46F-box protein 4618002887380045666Rat
1308128Qpctlglutaminyl-peptide cyclotransferase-like18004697580057022Rat
1593018Snrpd2small nuclear ribonucleoprotein D2 polypeptide18005714080059990Rat
2689Giprgastric inhibitory polypeptide receptor18006304780073223Rat
621066Eml2EMAP like 218008768480118784Rat
2325620Mir330microRNA 33018009268180092777Rat
1311604Gpr4G protein-coupled receptor 418012563980136786Rat
1309147Opa3outer mitochondrial membrane lipid metabolism regulator OPA318014163080160145Rat
11512067NEWGENE_1309147optic atrophy 3 (autosomal recessive, with chorea and spastic paraplegia)18016904980170772Rat
1311542Vaspvasodilator-stimulated phosphoprotein18017060880185882Rat
1562091Ppm1nprotein phosphatase, Mg2+/Mn2+ dependent 1N18019029380193002Rat
1303245Rtn2reticulon 218019559480208449Rat
1308198FosbFosB proto-oncogene, AP-1 transcription factor subunit18021469180221417Rat
9215275LOC103691049uncharacterized LOC10369104918021660980217676Rat
11511407LOC108349552uncharacterized LOC10834955218023414780235497Rat
9107624LOC10369106860S ribosomal protein L36a-like18023533180243880Rat
11459572LOC108349753uncharacterized LOC10834975318023780080246457Rat
1306992Ercc1ERCC excision repair 1, endonuclease non-catalytic subunit18025697380268198Rat
1591707Polr1gRNA polymerase I subunit G18026772580271001Rat
1593681Ppp1r13lprotein phosphatase 1, regulatory subunit 13 like18027128880290946Rat
1309109Ercc2ERCC excision repair 2, TFIIH core complex helicase subunit18029357480307334Rat
2317875Mir343microRNA 34318029868680298778Rat
621432Klc3kinesin light chain 318030607480315886Rat
2358Ckmcreatine kinase, M-type18032150780331841Rat
1591792Mark4microtubule affinity regulating kinase 418033551780367366Rat
1592539Exoc3l2exocyst complex component 3-like 218037270880404275Rat
1591724Bloc1s3biogenesis of lysosomal organelles complex-1, subunit 318041476680417385Rat
1591735Trappc6atrafficking protein particle complex subunit 6A18041751480424429Rat
1591760Nkpd1NTPase, KAP family P-loop domain containing 118042450780434137Rat
1595870Ppp1r37protein phosphatase 1, regulatory subunit 3718043971880471527Rat
1597035Gemin7gem (nuclear organelle) associated protein 718047396680487976Rat
1595818Zfp296zinc finger protein 29618048719380491422Rat
1563538ClasrpCLK4-associating serine/arginine rich protein18049152080515761Rat
2321078RelbRELB proto-oncogene, NF-kB subunit18051708180545019Rat
1310959Clptm1CLPTM1 regulator of GABA type A receptor forward trafficking18054905180580665Rat
11425368LOC108348938uncharacterized LOC10834893818057251780576377Rat
2135Apoc2apolipoprotein C218058902380593991Rat
70959Apoc4apolipoprotein C418059533980599525Rat
2134Apoc1apolipoprotein C118060663880609921Rat
2138Apoeapolipoprotein E18061289480616820Rat
1303022Tomm40translocase of outer mitochondrial membrane 4018061774980630253Rat
1309505Nectin2nectin cell adhesion molecule 218063144980666617Rat
68378Bcambasal cell adhesion molecule (Lutheran blood group)18067446380689122Rat
1307651CblcCbl proto-oncogene C18069932180716146Rat
1589465Bcl3BCL3, transcription coactivator18073075880745273Rat
1306386Ceacam16CEA cell adhesion molecule 16, tectorial membrane component18077381980783898Rat
7529532LOC102547975uncharacterized LOC10254797518079750480800804Rat
1589436Ceacam19CEA cell adhesion molecule 1918080095180809769Rat
3813PvrPVR cell adhesion molecule18082030680835712Rat
1564357Igsf23immunoglobulin superfamily, member 2318085078380869481Rat
11476293LOC108349553uncharacterized LOC10834955318085121680853236Rat
1311281Ceacam20CEA cell adhesion molecule 2018088085680912082Rat
7736402LOC102548132activated RNA polymerase II transcriptional coactivator p15-like18089242080892882Rat
631380Zfp180zinc finger protein 18018092074580940038Rat
11435211LOC108348994thymosin beta-4 pseudogene18093337980936142Rat
9406644LOC103691052thymosin beta-4 pseudogene18093372880934209Rat
1305757Zfp112zinc finger protein 11218094411880959072Rat
7536417Znf235zinc finger protein 23518096577980975525Rat
11357838LOC108349754endogenous retrovirus group K member 7 Pro protein-like18099131381007223Rat
620595Zfp111zinc finger protein 11118103568681046934Rat
11438175LOC108348999uncharacterized LOC10834899918106066581072420Rat
7498933LOC102548600zinc finger protein 235-like18107288081081258Rat
11444414LOC108348989high mobility group protein B1 pseudogene18108805081088794Rat
1564214Zfp108zinc finger protein 10818109364281100348Rat
9337305LOC103691069zinc finger protein 227-like18111427181115526Rat
1563843Zfp61zinc finger protein 6118112278981130818Rat
1560430Zfp94zinc finger protein 9418113749581152458Rat
9431454LOC103691053uncharacterized LOC10369105318115256481156145Rat
7529325LOC102548695zinc finger protein 45-like18115874381173245Rat
1311676Tescltescalcin-like18119286981193729Rat
1560355Lypd5Ly6/Plaur domain containing 518120283281213928Rat
621476Kcnn4potassium calcium-activated channel subfamily N member 418122785581245986Rat
1309888Smg9SMG9 nonsense mediated mRNA decay factor18125945081282893Rat
1311107Irgcimmunity related GTPase cinema18129173981295517Rat
620597Plaurplasminogen activator, urokinase receptor18132817181344954Rat
1304722Cadm4cell adhesion molecule 418136520081369841Rat
1564862Zfp428zinc finger protein 42818137114481382084Rat
2323012Srrm5serine/arginine repetitive matrix 518137625181377986Rat
1309409Irgqimmunity-related GTPase Q18139592281403872Rat
1565787Pinlypphospholipase A2 inhibitor and LY6/PLAUR domain containing18140663281412602Rat
619823Xrcc1X-ray repair cross complementing 118141263581441680Rat
1305025Zfp575zinc finger protein 57518144798781450156Rat
1311034Ethe1ETHE1, persulfide dioxygenase18145700881472061Rat
1561121Phldb3pleckstrin homology-like domain, family B, member 318147455381492631Rat
11383145LOC108349554uncharacterized LOC10834955418149073581492603Rat
69053Lypd3Ly6/Plaur domain containing 318149985681504306Rat
621373Tex101testis expressed 10118152977681534149Rat
6497684LOC100910611CD177 antigen-like18156468381584541Rat
6485273LOC100912839CD177 antigen-like18157115081572287Rat
1565655RGD1565655similar to BC049730 protein18159200481597637Rat
11470593LOC108349555uncharacterized LOC10834955518162718881630065Rat
6497094LOC100910734partner of Y14 and mago-like18164140381642275Rat
708435Ceacam4CEA cell adhesion molecule 418164380981650085Rat
11369943LOC108349556uncharacterized LOC10834955618168162881683318Rat
1642421Ceacam6CEA cell adhesion molecule 618168350081701230Rat
1583497Lypd4Ly6/Plaur domain containing 418172855281734286Rat
1583739Dmrtc2DMRT-like family C218173425681741419Rat
11394726Rps19ribosomal protein S1918175087381756629Rat
6484896Cd79aCD79a molecule18176360981768039Rat
620951Arhgef1Rho guanine nucleotide exchange factor 118176921281797237Rat
1563034ErflETS repressor factor like18179734181802555Rat
621002Rabac1Rab acceptor 118184366781846765Rat
2169Atp1a3ATPase Na+/K+ transporting subunit alpha 318185242381881565Rat
2735Grik5glutamate ionotropic receptor kainate type subunit 518188551681946731Rat
1311420Zfp574zinc finger protein 57418195206781957330Rat
621690Pou2f2POU class 2 homeobox 218196679182049116Rat
9072276LOC103691054uncharacterized LOC10369105418200380682026540Rat
1588968Dedd2death effector domain containing 218207302482089028Rat
1588959Zfp526zinc finger protein 52618208895582097444Rat
620351Gsk3aglycogen synthase kinase 3 alpha18209724482108238Rat
1311991ErfEts2 repressor factor18211244982120902Rat
1310706Ciccapicua transcriptional repressor18213544082163007Rat
620333Pafah1b3platelet-activating factor acetylhydrolase 1b, catalytic subunit 318216373382166259Rat
1595416Prr19proline rich 1918216702782172636Rat
1595911Tmem145transmembrane protein 14518217437982184075Rat
621190Megf8multiple EGF-like-domains 818218467182234045Rat
1563577Cnfncornifelin18223403282236602Rat
7639269LOC102549342uncharacterized LOC10254934218224489982405267Rat
3010Lipelipase E, hormone sensitive type18224803182266727Rat
7560013LOC102549501uncharacterized LOC10254950118225374582300967Rat
1304717Cxcl17C-X-C motif chemokine ligand 1718226738182279145Rat
7534509LOC102552028high mobility group protein B1-like18231153482314058Rat
67396Ceacam1CEA cell adhesion molecule 118232795582344345Rat
7621660LOC102549282uncharacterized LOC10254928218237044182372209Rat
1583255Erich4glutamate-rich 418240789982409639Rat
1549698Dmac2distal membrane arm assembly component 218241317182419157Rat
1305374B3gnt8UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 818241926482422852Rat
2196Bckdhabranched chain keto acid dehydrogenase E1 subunit alpha18242329182452094Rat
1307861Exosc5exosome component 518245210482461607Rat
2323264Tmem91transmembrane protein 9118246382482471310Rat
1566122B9d2B9 domain containing 218247325482479704Rat
69051Tgfb1transforming growth factor, beta 118248087582497196Rat
1309393Ccdc97coiled-coil domain containing 9718250357182511327Rat
1307456Hnrnpul1heterogeneous nuclear ribonucleoprotein U-like 118251274582548446Rat
620028AxlAxl receptor tyrosine kinase18255089282580761Rat
1306078Cyp2s1cytochrome P450, family 2, subfamily s, polypeptide 118259521182610350Rat
2323115LOC100359930Cyp2s1 protein-like18265201282653657Rat
6495491LOC100910953CD177 antigen-like18281570982820487Rat
1564380RGD1564380similar to BC049730 protein18283015382902864Rat
9303731LOC103691058CD177 antigen-like18283464082837268Rat
2322813LOC100363535hypothetical protein LOC10036353518291277782918308Rat
1584667LOC681077similar to testis expressed gene 10118292242982937637Rat
6493325LOC100911309nuclease-sensitive element-binding protein 1-like18295821782960783Rat
1562941Cd177CD177 molecule18296468382987306Rat
11499577LOC108349464uncharacterized LOC10834946418298673182989608Rat
1563502RGD1563502similar to PYM protein18300146483002336Rat
2467Cyp2b2cytochrome P450, family 2, subfamily b, polypeptide 218310392583119578Rat
628627Cyp2b3cytochrome P450, family 2, subfamily b, polypeptide 318316310383236615Rat
1594535Eif4g2-ps2eukaryotic translation initiation factor 4, gamma 2, pseudogene 218325975883262351Rat
9160854LOC103691092cytochrome P450 2B9-like18329686983315317Rat
735174Cyp2b21cytochrome P450, family 2, subfamily b, polypeptide 2118338978383418613Rat
1561337Epc2l1enhancer of polycomb homolog 2 (Drosophila)-like 118343550783438226Rat
2322934LOC100360011cytochrome P450, family 2, subfamily b, polypeptide 19-like18346189783467203Rat
620088Cyp2b12cytochrome P450, family 2, subfamily b, polypeptide 1218351116783522965Rat
9404051LOC103691072cytochrome P450 2B15-like18357121083584833Rat
6490909LOC100911763cytochrome P450 2B15-like18358568783613705Rat
2477Cyp2g1cytochrome P450, family 2, subfamily g, polypeptide 118362663983638154Rat
9360878LOC103691073uncharacterized LOC10369107318364460783653750Rat
2465Cyp2a3cytochrome P450, family 2, subfamily a, polypeptide 318365324883662118Rat
2463Cyp2a1cytochrome P450, family 2, subfamily a, polypeptide 118371122383725222Rat
2464Cyp2a2cytochrome P450, family 2, subfamily a, polypeptide 218374422983766490Rat
11418557LOC108349422uncharacterized LOC10834942218380761183811680Rat
1307759Sdccag1-ps1serologically defined colon cancer antigen 1, pseudogene 118381612383819739Rat
1583802LOC365218similar to Phosphoglycerate kinase 118382030983821826Rat
2476Cyp2f4cytochrome P450, family 2, subfamily f, polypeptide 418393397483947804Rat
620086Cyp2t1cytochrome P450, family 2, subfamily t, polypeptide 118396537083969466Rat
631376Egln2egl-9 family hypoxia-inducible factor 218396945683977665Rat
620931Rab4bRAB4B, member RAS oncogene family18397929883990680Rat
620883MiaMIA SH3 domain containing18399157783993270Rat
1307416Snrpasmall nuclear ribonucleoprotein polypeptide A18399967084008429Rat
1560854RGD1560854similar to FLJ41131 protein18400826384017741Rat
631336Itpkcinositol-trisphosphate 3-kinase C18401885784040433Rat
1311356Coq8bcoenzyme Q8B18404348784067066Rat
1307579NumblNUMB-like, endocytic adaptor protein18406784184091659Rat
6502710LOC10090962160S ribosomal protein L14-like18407938984082803Rat
11402568LOC108348928small nuclear ribonucleoprotein G pseudogene18410267684103452Rat
1307033Ltbp4latent transforming growth factor beta binding protein 418411804684152095Rat
1309281Shkbp1Sh3kbp1 binding protein 118415470384168074Rat
1304682Sptbn4spectrin, beta, non-erythrocytic 418416849484254679Rat
1306080Blvrbbiliverdin reductase B18425606384273726Rat
1564271Sertad3SERTA domain containing 318428094584284681Rat
1549778Sertad1SERTA domain containing 118429310284296370Rat
619960Prxperiaxin18430207484324560Rat
7527404LOC102552059transmembrane protein 258-like18431820084319206Rat
1307541Hipk4homeodomain interacting protein kinase 418432811484338486Rat
1308248Pld3phospholipase D family, member 318433926984361686Rat
1307554RGD1307554similar to CG16812-PA18436171584388767Rat
7514039LOC10255704660S ribosomal protein L17-like18439719584397825Rat
2082Akt2AKT serine/threonine kinase 218440093984451223Rat
7639736LOC102552149uncharacterized LOC10255214918445095384461140Rat
9424195LOC103691074uncharacterized LOC10369107418446627684468100Rat
1306256Ttc9btetratricopeptide repeat domain 9B18447082984473011Rat
1308381Map3k10mitogen activated protein kinase kinase kinase 1018447317884491689Rat
11431580LOC108349755small proline-rich protein 3-like18455931384559768Rat
1583801LOC365219similar to upstream of NRAS18456924084571935Rat
2318912LOC100362069ribosomal protein L28-like18457347284573996Rat
6500398LOC100910046zinc finger protein 60-like18457605984656464Rat
7691309LOC102553295NHP2-like protein 1-like18457743484579228Rat
7579720LOC102553956zinc finger protein 60-like18461024384624431Rat
7581488LOC102554049zinc finger protein 780B-like18463554984655240Rat
7569654LOC10255356560S ribosomal protein L23a-like18470017884701386Rat
2321914LOC100360543mCG115207-like18470250584704448Rat
7588314LOC102553760zinc finger protein 59-like18471974484739532Rat
1592570Zfp780bzinc finger protein 780B18475581184763979Rat
9082300LOC103689966MARCKS-related protein-like18481122684812717Rat
1585333Wdr87WD repeat domain 8718483989484858821Rat
2321719Zfp780b-ps1zinc finger protein 780B, pseudogene 118487890684896554Rat
7575422LOC102549611uncharacterized LOC10254961118489919284901773Rat
9129679LOC103691093putative zinc finger protein 82618493700684938053Rat
1591403Zfp59zinc finger protein 5918493700684960094Rat
7708840LOC102557320zinc finger protein 60-like18493804484938307Rat
621102Psmc4proteasome 26S subunit, ATPase 418497822084986536Rat
7577707LOC102549879uncharacterized LOC10254987918499036085001811Rat
2313189FcgbpFc fragment of IgG binding protein18500328085046840Rat
1311906Fcgbpl1Fc fragment of IgG binding protein-like 118505854185096492Rat
1305542Fblfibrillarin18510351985112619Rat
1307223Dyrk1bdual specificity tyrosine phosphorylation regulated kinase 1B18511281985120840Rat
1585399Acp7acid phosphatase 7, tartrate resistant18514138385162449Rat
1307705Pak4p21 (RAC1) activated kinase 418516246285201746Rat
1305932Nccrp1NCCRP1, F-box associated domain containing18521357885218030Rat
620862Sycnsyncollin18521982785220239Rat
1589046Ifnl3interferon, lambda 318523624385237775Rat
6493686Ifnl1interferon, lambda 118525210385253635Rat
1304707Lrfn1leucine rich repeat and fibronectin type III domain containing 118529088785308498Rat
620506Gmfgglia maturation factor, gamma18531247385322860Rat
1305597Samd4bsterile alpha motif domain containing 4B18532401785362266Rat
1306219Paf1PAF1 homolog, Paf1/RNA polymerase II complex component18536242185367999Rat
1311009Med29mediator complex subunit 2918536828885373691Rat
620722Zfp36zinc finger protein 3618538008885382565Rat
11367619Trnai-uau1transfer RNA isoleucine (anticodon UAU) 118538599885386091Rat
1310112Plekhg2pleckstrin homology and RhoGEF domain containing G218538649285399699Rat
621031Rps16ribosomal protein S1618540549985408444Rat
7572409LOC102550060uncharacterized LOC10255006018540943885417284Rat
1590217LOC685751similar to Ornithine decarboxylase (ODC)18542979685432789Rat
11514392LOC10834984340S ribosomal protein S28 pseudogene18543320785433520Rat
1563807Supt5hSPT5 homolog, DSIF elongation factor subunit18543778085466854Rat
1587684Timm50translocase of inner mitochondrial membrane 5018547081085480813Rat
70953Dll3delta like canonical Notch ligand 318548587585493683Rat
1562943Selenovselenoprotein V18549694085504189Rat
9381183Eid2bEP300 interacting inhibitor of differentiation 2B18550839785510131Rat
1591322Eid2EP300 interacting inhibitor of differentiation 218551561085517516Rat
1305932Nccrp1NCCRP1, F-box associated domain containing18555842085559652Rat
1583982LOC690191similar to formyl peptide receptor, related sequence 318598965386034423Rat
2316467Vom1r-ps4vomeronasal 1 receptor pseudogene 418602527086026128Rat
2316466Vom1r-ps5vomeronasal 1 receptor pseudogene 518605569886056542Rat
1310130Fpr-rs4formyl peptide receptor, related sequence 418607343586074406Rat
1565464Vom2r10vomeronasal 2 receptor, 1018610329886149320Rat
6490287LOC100911898vomeronasal type-2 receptor 26-like18620255386205662Rat
1582880Fpr-rs6formyl peptide receptor, related sequence 618626250386263534Rat
2316465Vom1r-ps6vomeronasal 1 receptor pseudogene 618627206486272938Rat
1626071Vom2r-ps22vomeronasal 2 receptor, pseudogene 2218630261086325155Rat
1359101Vom1r2vomeronasal 1 receptor 218636243286363340Rat
1359495Vom1r3vomeronasal 1 receptor 318642926286430158Rat
1359091Vom1r4vomeronasal 1 receptor 418653312786534023Rat
2316464Vom1r-ps7vomeronasal 1 receptor pseudogene 718655547286556059Rat
1563778Vom2r11vomeronasal 2 receptor, 1118660442686624214Rat
1590509LOC681853similar to DNA-directed RNA polymerase III 32 kDa polypeptide (RNA polymerase III C32 subunit)18664522386645983Rat
2316463Vom1r-ps8vomeronasal 1 receptor pseudogene 818665323386654127Rat
1359479Vom1r5vomeronasal 1 receptor 518667217686673081Rat
1590493LOC681871similar to putative pheromone receptor (Go-VN5)18673312586749728Rat
1592591Vom2r7vomeronasal 2 receptor, 718676955986770487Rat
7600313LOC102549906uncharacterized LOC10254990618677480586777111Rat
9238957LOC103691075uncharacterized LOC10369107518677913886787346Rat
1590175LOC685793similar to serine/threonine kinase18680801286810724Rat
1585397LOC687407similar to laminin receptor 1 (ribosomal protein SA)18683228386833256Rat
11404862LOC108349512uncharacterized LOC10834951218685630986873257Rat
1563982Fbxo27F-box protein 2718687280886878709Rat
1308308Fbxo17F-box protein 1718690376286919238Rat
1306221Mrps12mitochondrial ribosomal protein S1218692067986923626Rat
1309456Sars2seryl-tRNA synthetase 2, mitochondrial18692376986935506Rat
7591166LOC102550248uncharacterized LOC10255024818692592586931598Rat
6502457Ccer2coiled-coil glutamate-rich protein 218693639186939994Rat
621887NfkbibNFKB inhibitor beta18694107386948845Rat
621481Sirt2sirtuin 218694886686971954Rat
1310133RinlRas and Rab interactor-like18697199786983306Rat
71059Hnrnplheterogeneous nuclear ribonucleoprotein L18699409087006776Rat
69353Ech1enoyl-CoA hydratase 118700979887015996Rat
3003Lgals4galectin 418701959887027720Rat
61951Lgals7galectin 718704482387047223Rat
1307341Capn12calpain 1218706628987078348Rat
7578509LOC102550499uncharacterized LOC10255049918706673587070826Rat
61816Actn4actinin alpha 418707801287147347Rat
7690102LOC102550432uncharacterized LOC10255043218709210887094283Rat
735123Spint2serine peptidase inhibitor, Kunitz type, 218719937387221826Rat
620536Ppp1r14aprotein phosphatase 1, regulatory (inhibitor) subunit 14A18722468387232842Rat
61868Dpf1double PHD fingers 118724844887258070Rat
1311432Sipa1l3signal-induced proliferation-associated 1 like 318726083287467846Rat
9090475LOC103691094uncharacterized LOC10369109418738066987468731Rat
11476886LOC108348907uncharacterized LOC10834890718738403687408969Rat
9407641Wdr87lWD repeat domain 87 like18747720087479528Rat
7642645LOC102550982uncharacterized LOC10255098218748902187493973Rat
6501417LOC100909892ubiquitin-conjugating enzyme E2 N-like18763176187632659Rat
1309815Zfp790zinc finger protein 79018764705187662033Rat
7627463LOC10255300460S ribosomal protein L4-like18771357287716228Rat
9454640LOC103691096zinc finger protein 888-like18775985387761055Rat
2318958Zfp27zinc finger protein 2718777123887788554Rat
9160828LOC103690114zinc finger protein 383-like18779011287801824Rat
9264595LOC103691076uncharacterized LOC10369107618784374487851972Rat
9428697LOC103690144zinc finger protein 570-like18785217187853577Rat
1559509Zfp569zinc finger protein 56918788640987889357Rat
1309221Eif3keukaryotic translation initiation factor 3, subunit K18792714287937033Rat
1305463Map4k1mitogen activated protein kinase kinase kinase kinase 118793712687959514Rat
1586637Ryr1ryanodine receptor 118795959688066252Rat
9457455LOC103691077ryanodine receptor 1-like18797595587977851Rat
620476Rasgrp4RAS guanyl releasing protein 418807835088094331Rat
1303117Fam98cfamily with sequence similarity 98, member C18809524088098828Rat
1311713Spred3sprouty-related, EVH1 domain containing 318810121388112719Rat
1306765Ggngametogenetin18811287388116990Rat
1309842Psmd8proteasome 26S subunit, non-ATPase 818811681188123643Rat
6498645LOC10091042660S ribosomal protein L27-like18812637088126831Rat
1310942Catspergcation channel sperm associated auxiliary subunit gamma18813128288162609Rat
621450Kcnk6potassium two pore domain channel subfamily K member 618816843888176610Rat
735199Yif1bYip1 interacting factor homolog B, membrane trafficking protein18818237988192568Rat
2319167LOC100361913rCG54286-like18819249388194085Rat
9450385LOC103691097zinc finger protein 570-like18819331288201052Rat
2318764Zfp383zinc finger protein 38318820483588216548Rat
2323829Zfp420zinc finger protein 42018820483688216548Rat
1563223Zfp74zinc finger protein 7418823101688257565Rat
9387907LOC103691078uncharacterized LOC10369107818826411688265508Rat
11363847LOC108348102zinc finger protein 30 homolog18828140288336445Rat
7707514LOC102552698zinc finger protein 568-like18830702288309970Rat
1560188Zfp14ZFP14 zinc finger protein18835036188367370Rat
7576501LOC102547241zinc finger protein 82-like18837267688400032Rat
7606124LOC102550652ATP-dependent RNA helicase DDX18-like18838923988396332Rat
7679883LOC102548135ATP-dependent RNA helicase DDX18-like18840109688402921Rat
1563239Zfp566zinc finger protein 56618840790388413209Rat
621205Zfp260zinc finger protein 26018845213388465110Rat
6485475LOC100912787zinc finger protein 850-like18851026088525400Rat
9397683LOC103690201uncharacterized LOC10369020118856072888561481Rat
708385Zfp382zinc finger protein 38218858264188603219Rat
6484969LOC100912964zinc finger protein 567-like18860349288604384Rat
9100476Znf146zinc finger protein 14618861473688615684Rat
9186598LOC103691079uncharacterized LOC10369107918861570888632107Rat
11436634LOC108349558uncharacterized LOC10834955818863168388635987Rat
1584238LOC687527hypothetical protein LOC68752718864453888645634Rat
1309965Tbcbtubulin folding cofactor B18868093688686785Rat
1309395Polr2iRNA polymerase II subunit I18868681288688249Rat
9345801Thap8THAP domain containing 818874592888750343Rat
6490327LOC100911911CAP-Gly domain-containing linker protein 3-like18875043088766452Rat
1306245Clip3CAP-GLY domain containing linker protein 318875045388766453Rat
9423296LOC103691080uncharacterized LOC10369108018876146688762236Rat
6487140LOC100912458probable alpha-ketoglutarate-dependent dioxygenase ABH6-like18876683488772243Rat
1566318Alkbh6alkB homolog 618876687288772243Rat
1304580Syne4spectrin repeat containing nuclear envelope family member 418877272988777044Rat
1562079Sdhaf1succinate dehydrogenase complex assembly factor 118877947688780425Rat
6489499LOC100912030succinate dehydrogenase assembly factor 1, mitochondrial-like18877947688780485Rat
1305567Lrfn3leucine rich repeat and fibronectin type III domain containing 318881943988827002Rat
11514383LOC108349559uncharacterized LOC10834955918884762488852555Rat
1586434LOC688666similar to actin, gamma 2, smooth muscle, enteric18886170088862851Rat
1303081Tyrobptransmembrane immune signaling adaptor Tyrobp18887537088879305Rat
1359238Hcsthematopoietic cell signal transducer18887942588881653Rat
1308055NfkbidNFKB inhibitor delta18888381688892543Rat
69257Aplp1amyloid beta precursor like protein 118889752588908750Rat
1308456Kirrel2kirre like nephrin family adhesion molecule 218890982988921154Rat
620460Nphs1NPHS1 adhesion molecule, nephrin18892234688950560Rat
1306761Prodh2proline dehydrogenase 218895512588968501Rat
1560986RGD1560986similar to Gene model 108218897062688977387Rat
2318374Arhgap33Rho GTPase activating protein 3318897746088990780Rat
1565712Proser3proline and serine rich 318899455289007808Rat
621554Hspb6heat shock protein family B (small) member 618900811789010256Rat
1308901Lin37lin-37 DREAM MuvB core complex component18901025489014481Rat
1312037Psenenpresenilin enhancer gamma secretase subunit18901609389017449Rat
1305600U2af1l4U2 small nuclear RNA auxiliary factor 1-like 418901741489019651Rat
1563574Igflr1IGF-like family receptor 118902034189022221Rat
7678027Kmt2blysine methyltransferase 2B18902288989042176Rat
4888591Mir3569microRNA 356918904280689042881Rat
1584121Zbtb32zinc finger and BTB domain containing 3218904312189052863Rat
1309849Upk1auroplakin 1A18906058189071579Rat
1584097Cox6b1cytochrome c oxidase subunit 6B118907598789084834Rat
1310603Etv2ETS variant transcription factor 218909123989094570Rat
1306184Rbm42RNA binding motif protein 4218909929689109248Rat
2318093Haus5HAUS augmin-like complex, subunit 518911304589124971Rat
6487791LOC100912333uncharacterized LOC10091233318913219689133050Rat
1582983LOC688924hypothetical protein LOC68892418913315889151954Rat
2177Atp4aATPase H+/K+ transporting subunit alpha18916270089175504Rat
1304706Tmem147transmembrane protein 14718917799589179815Rat
620150Gapdhsglyceraldehyde-3-phosphate dehydrogenase, spermatogenic18918006389195347Rat
1562305Sbsnsuprabasin18920252789206994Rat
1561521Dmkndermokine18921526689229696Rat
71086Krtdapkeratinocyte differentiation associated protein18923468989235610Rat
2320881LOC100361079ribosomal protein L36-like18925854489258962Rat
1359614Ffar2free fatty acid receptor 218926819789271942Rat
7698901LOC102554169uncharacterized LOC10255416918927961089300566Rat
1311035Ffar3free fatty acid receptor 318930203589304064Rat
628613Ffar1free fatty acid receptor 118930847589309379Rat
1311610Cd22CD22 molecule18931347589329902Rat
7496170LOC102554355uncharacterized LOC10255435518933795289339792Rat
3035Magmyelin-associated glycoprotein18934532589360905Rat
11399620LOC108349549uncharacterized LOC10834954918934705389348990Rat
70971Hamphepcidin antimicrobial peptide18936802189369960Rat
620975Usf2upstream transcription factor 2, c-fos interacting18937179889383005Rat
69236Lsrlipolysis stimulated lipoprotein receptor18938351589399041Rat
6501427LOC100909893protein FAM187B-like18939901989403047Rat
1597448Fam187bfamily with sequence similarity 187, member B18940871889416629Rat
620827Fxyd5FXYD domain-containing ion transport regulator 518946485389474450Rat
620830Fxyd7FXYD domain-containing ion transport regulator 718947460189484069Rat
69306Fxyd1FXYD domain-containing ion transport regulator 118948419789488279Rat
735035Lgi4leucine-rich repeat LGI family, member 418949158889502939Rat
620825Fxyd3FXYD domain-containing ion transport regulator 318950256189510146Rat
61982Hpnhepsin18953411289549575Rat
3631Scn1bsodium voltage-gated channel beta subunit 118955073889560469Rat
1311022Gramd1aGRAM domain containing 1A18956398289590406Rat
11446352LOC108349560uncharacterized LOC10834956018962773789632391Rat
1561430RGD1561430similar to ABO histo-blood group B transferase18963538689638670Rat
1563307RGD1563307similar to Set beta isoform18964557089646774Rat
6499588LOC100910258zinc finger protein 599-like18967230889686143Rat
9232672LOC103691082zinc finger protein 599-like18968388389686143Rat
1549713Scgb1b24secretoglobin, family 1B, member 2418971855789718617Rat
1549752Scgb2b2secretoglobin, family 2B, member 218972430389725263Rat
1560154Scgb2b24secretoglobin, family 2B, member 2418977887889779790Rat
1596105Apbhandrogen-binding protein eta18978555289786842Rat
1583799LOC365231similar to heat shock protein 1, alpha18982657889830556Rat
1583798LOC365232similar to karyopherin (importin) alpha 418986973289871302Rat
1359129LOC494538ABP beta18994282889944785Rat
1311531Scgb1b30secretoglobin, family 1B, member 3018995288189954290Rat
1306411WtipWT1 interacting protein18996649689999892Rat
1312023Uba2ubiquitin-like modifier activating enzyme 219001068190035522Rat
1589941Pdcd2lprogrammed cell death 2-like19004546890057756Rat
2727Gpiglucose-6-phosphate isomerase19006341190091287Rat
1308428Garre1granule associated Rac and RHOG effector 119009733190176119Rat
11462101LOC10834972140S ribosomal protein S23 pseudogene19013097290138452Rat
1305695Lsm14aLSM14A mRNA processing body assembly factor19020086690246292Rat
9154399LOC103691083uncharacterized LOC10369108319020336990204487Rat
1583054LOC687653similar to 40S ribosomal protein S219036517490369415Rat
6495874LOC100910905uncharacterized LOC10091090519049771090499423Rat
1583737Kctd15potassium channel tetramerization domain containing 1519050669790522217Rat
1308979Chst8carbohydrate sulfotransferase 819054209590685257Rat
11502957LOC108349467uncharacterized LOC10834946719056551990572761Rat
11462084LOC108349466uncharacterized LOC10834946619057286490575803Rat
1560088RGD1560088similar to NADH:ubiquinone oxidoreductase B15 subunit19072926790729711Rat
1594571Pepdpeptidase D19082067091285128Rat
11488255LOC108348197calpain small subunit 1-like19091803190921237Rat
9395288LOC103691084uncharacterized LOC10369108419096713990967909Rat
7516055LOC102548322THAP domain-containing protein 8-like19098232390985908Rat
9152948LOC103689973WD repeat-containing protein 62-like19099544391034596Rat
1306714Wdr62WD repeat domain 6219099554591034592Rat
1583800Ovol3ovo-like zinc finger 319103753191041167Rat
6493655LOC100911363calpain small subunit 1-like19105836891064929Rat
2270Capns1calpain, small subunit 119105852891064880Rat
11406493LOC108349561uncharacterized LOC10834956119107029291071030Rat
6496527Cox7a1cytochrome c oxidase subunit 7A119107059391096190Rat
6493192LOC10091140140S ribosomal protein S24-like19107880091081516Rat
1310561Pdcd5programmed cell death 519117347391178801Rat
6489199LOC100912106programmed cell death protein 5-like19117348191178805Rat
2330CebpgCCAAT/enhancer binding protein gamma19128695691297459Rat
7604390LOC102555648uncharacterized LOC10255564819132598491331454Rat
2326CebpaCCAAT/enhancer binding protein alpha19136349291366164Rat
11455267LOC108349562uncharacterized LOC10834956219137244591377328Rat
7703231LOC102555707uncharacterized LOC10255570719140223991404359Rat
7575724LOC102555770uncharacterized LOC10255577019140815191414194Rat
621672Slc7a10solute carrier family 7 member 1019143295291448566Rat
619729Lrp3LDL receptor related protein 319144730891462603Rat
6576114Trnat-agutransfer RNA threonine (anticodon AGU)19148651591486588Rat
11358633Trnat-agu1transfer RNA threonine (anticodon AGU) 119148651591486588Rat
1560122Wdr88WD repeat domain 8819148780791528318Rat
1308935Gpatch1G patch domain containing 119152909691578032Rat
1583028LOC687679similar to small nuclear ribonucleoprotein polypeptide G19158821591588629Rat
1308366Rhpn2rhophilin, Rho GTPase binding protein 219159634491657395Rat
1564719Faap24FA core complex associated protein 2419165726391663485Rat
1311730Cep89centrosomal protein 8919166372391705979Rat
619905Slc7a9solute carrier family 7 member 919170903491738492Rat
1562792Tdrd12tudor domain containing 1219173912691811577Rat
11435664LOC10834943640S ribosomal protein S2 pseudogene19174624491747155Rat
1302935Nudt19nudix hydrolase 1919182031791845215Rat
1561747Rgs9bpregulator of G protein signaling 9 binding protein19185527091855983Rat
1307106Ankrd27ankyrin repeat domain 2719185704891958763Rat
1308334Dpy19l3dpy-19 like C-mannosyltransferase 319200292792069855Rat
1307017Zfp507zinc finger protein 50719208967492119983Rat
11390820LOC108349563uncharacterized LOC10834956319233685692351115Rat
9467046LOC103691086uncharacterized LOC10369108619236816592371133Rat
11399516LOC108348721uncharacterized LOC10834872119249313392495924Rat
1306322Tshz3teashirt zinc finger homeobox 319270318092775020Rat
11379739LOC108349564uncharacterized LOC10834956419277597492780301Rat
11490770LOC108349565uncharacterized LOC10834956519281036992821758Rat
6486902LOC100912426nucleoside diphosphate-linked moiety X motif 19, mitochondrial-like19321600993218262Rat
1562402RGD1562402similar to 60S ribosomal protein L27a19324202293242530Rat
1563363Zfp536zinc finger protein 53619368911494155457Rat
11504974LOC108349103uncharacterized LOC10834910319377576493803128Rat
9273856LOC103691087uncharacterized LOC10369108719383193293837657Rat
11418222LOC108349449uncharacterized LOC10834944919427220594330488Rat
1310358Uri1URI1, prefoldin-like chaperone19434651394404362Rat
9418845LOC103691089uncharacterized LOC10369108919438913794391311Rat
11358405LOC108349566uncharacterized LOC10834956619440576794440664Rat
9444700LOC103691090uncharacterized LOC10369109019447382694484689Rat
2294Ccne1cyclin E119448583094495112Rat
1591916LOC502323similar to mitochondrial ribosomal protein L3219449832094502474Rat
1585208LOC690000similar to CG3740-PA19457271494587842Rat
1310544Plekhf1pleckstrin homology and FYVE domain containing 119460904194616565Rat
11381349LOC108349450uncharacterized LOC10834945019461085294615482Rat
11366552LOC108349756glyceraldehyde-3-phosphate dehydrogenase pseudogene19464151894642296Rat
9254474LOC103691100dynein assembly factor with WDR repeat domains 1-like19465233894653686Rat
1305955Pop4POP4 homolog, ribonuclease P/MRP subunit19466112794669461Rat
7544198LOC102547570uncharacterized LOC10254757019467474294685664Rat
1597141LOC361559hypothetical gene supported by AB012133; NM_13342119467474294730049Rat
1585163Uqcrb-ps1ubiquinol-cytochrome c reductase binding protein, pseudogene 119471839694718876Rat
9168486LOC10369110160S ribosomal protein L13a-like19473732494749260Rat
1584053LOC690114hypothetical protein LOC69011419475712594764986Rat
1584044LOC690124similar to Protein C9orf8219477197994772816Rat
1583796LOC365238similar to CG15432-PA19477949694788362Rat
11436011LOC108348090zinc finger protein OZF-like19478845094812942Rat
7710512LOC102548231zinc finger protein 850-like19484722494867345Rat
7683572LOC102548320zinc finger protein 845-like19487147994896090Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10334D1Wox1420617970786579708055Ratregion
10335D1Arb3632717968943679689765Ratregion
10442D1Wox1620018365688283657083Ratregion
10444D1Wox178118310358083103662Ratregion
10646D1Wox3011318006333280063446Ratregion
34332D1Mgh614519139400991394135Ratregion
36209D1Rat2616518088733880887507Ratregion
36273D1Rat9927819310735193107628Ratregion
37288D1Rat34121919196178491962094Ratregion
37288D1Rat34121919117424091174466Ratregion
37544D1Rat20321119317780993178015Ratregion
37670D1Rat17720318031476580314958Ratregion
37946D1Rat22416719341005893410226Ratregion
36765D1Rat2715619420140094201552Ratregion
34795D1Rat9715718245379282453948Ratregion
34933D1Rat9615318216629182166443Ratregion
35685D1Rat1012818570684785706974Ratregion
35793D1Rat2814519308145793081598Ratregion
35875D1Rat2315418023121780231372Ratregion
38172D1Rat41014919136249191362642Ratregion
38188D1Rat21316818328265983282814Ratregion
40570D1Rat33816718495132484951460Ratregion
40616D1Rat33617318448637884486552Ratregion
40714D1Rat25820018617497286175174Ratregion
40730D1Rat26320019154744191547658Ratregion
38420D1Rat18920219086441590864614Ratregion
38420D1Rat18920219080414390804342Ratregion
38792D1Rat13724519422537294225616Ratregion
39312D1Rat21220019109198691092159Ratregion
39312D1Rat21220018863458588634758Ratregion
39532D1Rat26114718070925180709404Ratregion
42083D1Arb3730819490950794909728Ratregion
41374D1Rat26515719436407394364229Ratregion
42453D1Rat47822118592611785926334Ratregion
42470D1Rat48222218701637287016595Ratregion
42473D1Rat33717518437138784371549Ratregion
42475D1Rat41120318926445989264657Ratregion
42478D1Rat48422518929598689296207Ratregion
42478D1Rat48422518929589089296207Ratregion
41056D1Rat26418119138796591388147Ratregion
41684D1Rat34213419209175592091872Ratregion
41862D1Rat33914318225046282250604Ratregion
43238D1Got8017918042044180420619Ratregion
43239D1Got7821117970484679705055Ratregion
43240D1Got8211318124108081241192Ratregion
43243D1Got8417618258643182586606Ratregion
43247D1Got8126518036928380369547Ratregion
43251D1Got9318018524516485245343Ratregion
43252D1Got26215818433359684333753Ratregion
43256D1Got9216219085256290852723Ratregion
43256D1Got9216219079229090792451Ratregion
43257D1Got8610818913028989130396Ratregion
43260D1Got9110119179602491796124Ratregion
43262D1Got8723919115656591156803Ratregion
43262D1Got8723918922897089229208Ratregion
43266D1Got8919419196181291962089Ratregion
43266D1Got8919419117426891174461Ratregion
60234D1Got26314019085256390852702Ratregion
60234D1Got26314019079229190792430Ratregion
60262D1Got8318318066261080662778Ratregion
629597D1Hmgc415018310351683103667Ratregion
66566D1Mco1715618188220681882361Ratregion
66568D1Mco1826718916063289160898Ratregion
66586D1Mco2222318370988683710108Ratregion
66587D1Mco2317318374392783744072Ratregion
66588D1Mco2410918366363983663747Ratregion
66589D1Mco2528918310131083101598Ratregion
66589D1Mco2528918278843782788725Ratregion
67756D1Uwm113018530584985305978Ratregion
1632044D1Wox4345118331589083316340Ratregion
1579135D10Chm19621519037277290374092Ratregion
1629088D1Got38814818803042888030575Ratregion
1629436D1Wox7911318357050783570629Ratregion
1629590D1Wox6415818092076380920920Ratregion
1629655D1Wox8017018894918688949355Ratregion
1638959D1Got42827718946657789466854Ratregion
1633338D1Wox4819918310354383103769Ratregion
1635552D1Wox8322519136241791362641Ratregion
1636057D1Got39713819018138590181524Ratregion
1637558D1Wox6518194593181946140Ratregion
1638364D1Wox709518311982883119922Ratregion
7205966Hpn7418953436289534435Ratregion
7191257Cebpa9919136443591364533Ratregion
7205854Ckm18918033011280331592Ratregion
5035917PMC307658P18518248111282481196Ratregion
5036025PMC94247P18219136454891364629Ratregion
5038964RH12743418019128811891288297Ratregion
7206254Ffar244318926922789269669Ratregion
7206594Dpf1103918725697987258017Ratregion
5036237D7Bwg0847e25219144512991445380Ratregion
5036404UniSTS:14381712918934560089345728Ratregion
5036543Xrcc115218144131181441557Ratregion
5039136RH12753321819206304992063266Ratregion
5036657AU04873624419365727893657521Ratregion
5036853AU04941923518232387882324112Ratregion
5037077WI-2252818017986904779869226Ratregion
5037135GDB:37547869818617648986176586Ratregion
5035576PITPN17018822260988222778Ratregion
5035576PITPN17018780788587808054Ratregion
5035727WI-1921125118382023183820481Ratregion
5031286PMC125755P119418032495080325143Ratregion
5033879RH14046121018138183581382044Ratregion
5033887RH14049521118399973483999944Ratregion
7205910Cox7a121819107228491072999Ratregion
7206176UniSTS:5324166618061369980614162Ratregion
5031400PMC15797P121618955091289551127Ratregion
5028841RH14253311818550934085509457Ratregion
5031624AU04769813919275157292751711Ratregion
5034277RH14203221818835154388351760Ratregion
5031808AU04707919719169624691696442Ratregion
5034488BF41578015318246394382465206Ratregion
5031934AU0466468818382822183828308Ratregion
5029347RH14445022518006326380063487Ratregion
5032089D7Mit1166418737861787378680Ratregion
5034774AI59965214518700600987006511Ratregion
5026774RH13347720518216376982163973Ratregion
5026842RH13373918018338989983390078Ratregion
5026894RH13393921418911306689113279Ratregion
5029468D1Bda1319918889781488898096Ratregion
5029514D1Bda522918224806982248297Ratregion
5029541BF41834316818902201589022182Ratregion
5026932RH13408920418237293582373191Ratregion
5026964RH13420621618433825384338468Ratregion
5026972RH13423618218115795981158140Ratregion
5027070SGC30851018444783184448085Ratregion
5032375AI84491513919096295990963097Ratregion
5032375AI84491513918876627788766415Ratregion
5027109WI-1380813018700097487001103Ratregion
5029777BI27814717118729741787297587Ratregion
5029879BE09723920118232886682329066Ratregion
5032565RH4636517619270329192703466Ratregion
5032573WI-1241712618216288082163005Ratregion
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Position Markers

Flank 1: (D1Arb37)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2191,209,302 - 91,209,524 (+)MAPPER
Rnor_6.0194,909,507 - 94,909,728NCBI
Rnor_5.0196,008,597 - 96,008,818UniSTS
Celera185,540,341 - 85,540,562UniSTS
FHH x ACI Map148.9499RGD
FHH x ACI Map148.9499UniSTS
Cytogenetic Map1 RGD
Peak: (D1Rat212)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2185,424,647 - 85,424,821 (+)MAPPER
mRatBN7.2185,424,647 - 85,424,821 (-)MAPPER
Rnor_6.0191,091,986 - 91,092,159NCBI
Rnor_6.0188,634,585 - 88,634,758NCBI
Rnor_5.0189,791,366 - 89,791,539UniSTS
Rnor_5.0192,226,668 - 92,226,841UniSTS
Celera179,800,789 - 79,800,962UniSTS
RH 3.4 Map1850.1RGD
RH 3.4 Map1850.1UniSTS
RH 2.0 Map1535.4RGD
SHRSP x BN Map143.4099RGD
FHH x ACI Map145.8399RGD
Flank 2: (D1Arb36)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2178,430,424 - 78,430,754 (+)MAPPER
Rnor_6.0179,689,436 - 79,689,765NCBI
Rnor_5.0180,946,064 - 80,946,391UniSTS
RGSC_v3.4178,134,192 - 78,134,522RGD
RGSC_v3.4178,153,000 - 78,153,323RGD
RGSC_v3.4178,134,193 - 78,134,522UniSTS
RGSC_v3.1178,231,111 - 78,231,434RGD
Celera172,898,072 - 72,898,401UniSTS
SHRSP x BN Map140.2499UniSTS
SHRSP x BN Map140.2499RGD
FHH x ACI Map140.1RGD
Cytogenetic Map1q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)125439386904217Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15655769122614963Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1565577285706974Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11131448983657083Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11131448983657083Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11131448983657083Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11131448983657083Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123406428108057505Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)125951907130917265Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134993530173445086Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13537750894364229Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)135377692217372257Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13585416780854167Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13585416780854167Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13585416780854167Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14190724986907249Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143579208126240667Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143579208126240667Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143579208126240667Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143579208126240667Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143579208126240667Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143579208126240667Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143579208126240667Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)149147799156446783Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14954732883657083Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14957857794578577Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149578577169852184Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149578693217054291Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15052271494225616Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15385134883657083Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15385134883657083Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)157761301104391981Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)158209327103209327Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)158354072161711996Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)164588516125875986Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)166113339122614963Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)16722768394201552Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)179134941113593716Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)179689548124689548Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17968976594909507Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)182788437239853971Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)183502376128502376Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)183656882126240667Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)185779320130779320Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)185917265130917265Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)186776571131776571Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)188634585106002500Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)190804143161321256Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)191093646136093646Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)194201400184846632Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)194201400197187904Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)194225372130917265Rat
1300153Bp171Blood pressure QTL 1713.37arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194364073153076991Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Cia2


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Cia2  Collagen induced arthritis QTL 2    Type II Collagen induced arthritis QTL 2  Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference
qtl_gene 934 known and 268 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_gene whole genome analysis using PGMapper revealed Chrna7, Fcgrt, Ax1, Tgfb1, Gpi, Bax, Il4i1, Zfp36, Xrcc1, Gp49b, Il11 and Il16 as RA associated genes, Zfp36 and Xrcc1 as RA associated polymorphism either in coding or regulatory region 2300074
qtl_general F2 progeny homozygous for DA allele developed less severe arthritis than animals with one or two F344 alleles 61062