Hrtrt1 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Hrtrt1 (Heart rate QTL 1) Rattus norvegicus

Symbol: Hrtrt1
Name: Heart rate QTL 1
RGD ID: 1300121
Previously known as: Hr1; Specialized Center of Research QTL 24; SCOR24
Trait: heart pumping trait   (VT:2000009)    
Measurement Type: heart rate   (CMO:0000002)    
LOD Score: 3.7
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2165,789,093 - 115,540,829RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0166,113,339 - 122,614,963RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0167,159,157 - 123,747,809RGDRnor5.0
RGSC_v3.4164,744,882 - 116,153,262RGDRGSC3.4
RGSC_v3.1156,717,951 - 116,231,605RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1Ratheart disease  IAGP 727992 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1Ratabnormal heart rate  QTM 727992 RGD 
Hrtrt1Ratincreased heart rate  IAGP 727992 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1Ratheart rate  IDA 727992 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1Ratcontrolled sodium content diet  IDA 727992 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1Ratvascular indwelling catheter method  IDA 727992 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1RatBN/SsNHsd  IEA 727992 RGD 
Hrtrt1RatSS/JrHsdMcwi  IEA 727992 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Hrtrt1Ratheart pumping trait  IDA 727992 RGD 


#
Reference Title
Reference Citation
1. Genomic map of cardiovascular phenotypes of hypertension in female Dahl S rats. Moreno C, etal., Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Oct 07.

Related QTL Description Reference
Hrtrt2 maps to same region RGD:727992



1 to 20 of 1304 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
9418836LOC103691003uncharacterized LOC10369100316577949465821284Rat
628807Cacng7calcium voltage-gated channel auxiliary subunit gamma 716580005965831246Rat
3397Prkcgprotein kinase C, gamma16583285165860676Rat
727835Myadmmyeloid-associated differentiation marker16586418065874701Rat
41082912Rpl17-ps11ribosomal protein L17, pseudogene 1116589225565892870Rat
1333287Or6al1olfactory receptor family 6 subfamily A member L116590685065907824Rat
9074148LOC103689958olfactory receptor 49-like16591190765913255Rat
1333767Or6al2olfactory receptor family 6 subfamily A member L216591740665918380Rat
1309415Nlrp12NLR family, pyrin domain containing 1216593261065969873Rat
4108499Mir295-1microRNA 295-116596256665962646Rat
2325474Mir294microRNA 29416596268965962759Rat
2325475Mir293microRNA 29316596305065963121Rat
4888545Mir291bmicroRNA 291b16596377465963881Rat
2325541Mir292microRNA 29216596406265964143Rat
2325542Mir291amicroRNA 291a16596435065964431Rat
2325374Mir290microRNA 29016596464865964728Rat
1584935Nosip-ps1nitric oxide synthase interacting protein, pseudogene 116599616765997001Rat
1565097Slc7a3l1solute carrier family 7 member 3 like 116605313566067042Rat
41035119E2f5-ps1E2F transcription factor 5, pseudogene 116607514466076828Rat
11408030LOC10834862860S ribosomal protein L7a pseudogene16610073666101543Rat

1 to 20 of 1304 rows
1 to 20 of 1170 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10279D1Wox1214717759307977593226Ratregion
10280D1Arb3525017759298477593234Ratregion
10281D1Mgh2719517759876677598961Ratregion
10332D1Arb3229317786449677864789Ratregion
10333D1Arb3324617787625477876500Ratregion
10334D1Wox1420617843047178430669Ratregion
10334D1Wox1420617844904778449238Ratregion
10335D1Arb3632717843042478430754Ratregion
10337D1Mgh514217843053678430678Ratregion
10442D1Wox1620218217474382174945Ratregion
10444D1Wox178318159422681594309Ratregion
10613D1Arb103931108698333108698726Ratregion
10646D1Wox3011517880456978804684Ratregion
10839D1Wox1812019464443594644553Ratregion
11144D1Wox1114716583292965833076Ratregion
11145D1Arb3130216583290165833203Ratregion
34258D1Mgh3510719846236998462476Ratregion
34258D1Mgh3510719846236998463159Ratregion
34332D1Mgh612718779014987790276Ratregion
34381D1Mgh71411106047847106047988Ratregion
1 to 20 of 1170 rows

Flank 1: (D1Mit1)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.1156,717,951 - 56,718,312RGD
RH 3.4 Map1683.1RGD
RH 3.4 Map1683.1UniSTS
RH 2.0 Map1413.3RGD
SHRSP x BN Map132.6799RGD
Peak: (D1Rat265)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2190,664,883 - 90,665,040 (+)MAPPER
Rnor_6.0194,364,073 - 94,364,229NCBI
Rnor_5.0195,453,405 - 95,453,561UniSTS
RGSC_v3.4190,448,902 - 90,449,243RGD
RGSC_v3.4190,449,000 - 90,449,156UniSTS
RGSC_v3.1190,527,111 - 90,527,267RGD
Celera184,998,195 - 84,998,351UniSTS
RH 3.4 Map1886.1RGD
RH 3.4 Map1886.1UniSTS
RH 2.0 Map1588.2RGD
SHRSP x BN Map144.5299RGD
Cytogenetic Map1q22UniSTS
Flank 2: (D1Rat33)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21115,540,693 - 115,540,829 (+)MAPPER
Rnor_6.01122,614,824 - 122,614,963NCBI
Rnor_5.01123,747,670 - 123,747,809UniSTS
RGSC_v3.41116,084,994 - 116,085,134RGD
RGSC_v3.41115,946,374 - 115,946,524RGD
RGSC_v3.41116,153,112 - 116,153,262RGD
RGSC_v3.11116,231,455 - 116,231,605RGD
Celera1107,817,886 - 107,818,025UniSTS
Celera1107,764,198 - 107,764,347UniSTS
SHRSP x BN Map153.8299UniSTS
SHRSP x BN Map153.8299RGD
FHH x ACI Map155.54RGD


1 to 10 of 91 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat

1 to 10 of 91 rows


Database
Acc Id
Source(s)
NCBI Gene Hrtrt1


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-04-14 Hrtrt1  Heart rate QTL 1  Hr1    Symbol updated 1299863 APPROVED

Note Type Note Reference
qtl_general additional information, including phenotype and mapping information, can be found at Genomic Map of Cardiovascular Phenotypes 727992
qtl_general mean heart rate measured over 3 hours from rats on high salt diet 727992