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Gene: Upk1a (uroplakin 1A) Rattus norvegicus
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Symbol: Upk1a
Name: uroplakin 1A
RGD ID: 1309849
Description: Predicted to be involved in epithelial cell differentiation. Predicted to localize to apical plasma membrane urothelial plaque and cell surface. Orthologous to human UPK1A (uroplakin 1A); INTERACTS WITH 17beta-estradiol; bisphenol A; cyclophosphamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Cox6b; cytochrome c oxidase, subunit VIb; LOC365227; uroplakin 1a variant X2; uroplakin-1a
Orthologs:
Homo sapiens (human) : UPK1A (uroplakin 1A)  HGNC  Alliance
Mus musculus (house mouse) : Upk1a (uroplakin 1A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Upk1a (uroplakin 1A)
Pan paniscus (bonobo/pygmy chimpanzee) : UPK1A (uroplakin 1A)
Canis lupus familiaris (dog) : UPK1A (uroplakin 1A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Upk1a (uroplakin 1A)
Sus scrofa (pig) : UPK1A (uroplakin 1A)
Chlorocebus sabaeus (African green monkey) : UPK1A (uroplakin 1A)
Heterocephalus glaber (naked mole-rat) : Upk1a (uroplakin 1A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0189,060,581 - 89,071,579 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl189,060,581 - 89,068,348 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0190,215,600 - 90,226,385 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,654,294 - 85,662,252 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1185,732,415 - 85,743,346 (-)NCBI
Celera180,231,387 - 80,239,144 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Upk1a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1309849
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.