Hiatl3 (hippocampus abundant transcript-like 3) - Rat Genome Database

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Gene: Hiatl3 (hippocampus abundant transcript-like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Hiatl3
Name: hippocampus abundant transcript-like 3
RGD ID: 1305281
Description: Predicted to enable pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be involved in carbohydrate transport and pyrimidine nucleotide-sugar transmembrane transport. Predicted to be located in Golgi membrane.
Type: pseudo (Ensembl: protein-coding)
Previously known as: Hiat1; hippocampus abundant gene transcript 1; hippocampus abundant transcript 1; LOC295398; major facilitator superfamily domain containing 14A; Mfsd14a
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2166,756,193 - 66,758,919 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,579,174 - 204,659,319 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0169,788,609 - 69,820,986 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl169,788,609 - 69,820,981 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,521,181 - 237,557,212 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera164,509,972 - 64,512,698 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15632090   PMID:21873635  


Genomics

Variants

.
Variants in Hiatl3
14 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat

Markers in Region
UniSTS:488263  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4165,154,711 - 65,156,345UniSTSRGSC3.4
Celera164,510,081 - 64,511,715UniSTS
Cytogenetic Map2q41UniSTS
Cytogenetic Map1q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 10 24 16 16 16 74 26 35 11
Low 2 35 33 25 3 25 8 11 9 11 19 8
Below cutoff 2 29 38 30 11 30 1 61 22 25 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000075340   ⟹   ENSRNOP00000064285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl169,788,609 - 69,820,981 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088123   ⟹   ENSRNOP00000075642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl169,789,110 - 69,820,976 (+)Ensembl
RefSeq Acc Id: NM_001106467   ⟹   NP_001099937
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2166,756,193 - 66,758,919 (+)NCBI
Rnor_6.0169,788,609 - 69,820,986 (+)NCBI
Rnor_5.02237,521,181 - 237,557,212 (+)NCBI
RGSC_v3.42212,858,841 - 212,890,340 (-)RGD
Celera164,509,972 - 64,512,698 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein EDL82041 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064285.2
Reference Protein Sequences
RefSeq Acc Id: NP_001099937   ⟸   NM_001106467
- Sequence:
RefSeq Acc Id: ENSRNOP00000064285   ⟸   ENSRNOT00000075340
RefSeq Acc Id: ENSRNOP00000075642   ⟸   ENSRNOT00000088123
Protein Domains
Major facilitator superfamily (MFS) profile

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689683
Promoter ID:EPDNEW_R208
Type:multiple initiation site
Name:Hiatl3_1
Description:hippocampus abundant transcript-like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0169,788,607 - 69,788,667EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305281 AgrOrtholog
BioCyc Gene G2FUF-60963 BioCyc
Ensembl Genes ENSRNOG00000015502 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000050407 Ensembl
Ensembl Transcript ENSRNOT00000075340.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1250.20 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7456962 IMAGE-MGC_LOAD
InterPro MFS UniProtKB/TrEMBL
  MFS_dom UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/TrEMBL
  Nuc_sug_transpt UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/TrEMBL
  Tet-R_TetA/multi-R_MdtG UniProtKB/TrEMBL
MGC_CLONE MGC:188651 IMAGE-MGC_LOAD
NCBI Gene 100134827 ENTREZGENE
PANTHER PTHR10231 UniProtKB/TrEMBL
  UDP-N-ACETYLGLUCOSAMINE TRANSPORTER UniProtKB/TrEMBL
Pfam MFS_1 UniProtKB/TrEMBL
  Nuc_sug_transp UniProtKB/TrEMBL
PhenoGen Hiatl3 PhenoGen
PRINTS TCRTETA UniProtKB/TrEMBL
PROSITE MFS UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015502 RatGTEx
  ENSRNOG00000050407 RatGTEx
Superfamily-SCOP MFS general substrate transporter UniProtKB/TrEMBL
  Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt M0R4J8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-02-01 Hiatl3  hippocampus abundant transcript-like 3  Mfsd14a  major facilitator superfamily domain containing 14A  Name and Symbol changed 629549 APPROVED
2015-11-12 Mfsd14a  major facilitator superfamily domain containing 14A  Hiat1  hippocampus abundant transcript 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-17 Hiat1  hippocampus abundant transcript 1  Hiat1  hippocampus abundant gene transcript 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Hiat1  hippocampus abundant gene transcript 1   Hiat1_predicted  hippocampus abundant gene transcript 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Hiat1_predicted  hippocampus abundant gene transcript 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED