Rgs9bp (regulator of G protein signaling 9 binding protein) - Rat Genome Database

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Gene: Rgs9bp (regulator of G protein signaling 9 binding protein) Rattus norvegicus
Analyze
Symbol: Rgs9bp
Name: regulator of G protein signaling 9 binding protein
RGD ID: 1561747
Description: Predicted to be involved in G protein-coupled receptor signaling pathway and detection of light stimulus involved in visual perception. Predicted to be located in membrane and rod photoreceptor outer segment. Predicted to be active in neuron projection. Human ortholog(s) of this gene implicated in bradyopsia 2. Orthologous to human RGS9BP (regulator of G protein signaling 9 binding protein); PARTICIPATES IN visual phototransduction pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC499132; regulator of G-protein signaling 9-binding protein; regulator of G-protein signalling 9 binding protein; RGD1561747; similar to RGS9-1 anchor protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,386,326 - 97,387,039 (-)NCBIGRCr8
mRatBN7.2188,249,438 - 88,250,151 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,249,438 - 88,250,151 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,654,417 - 93,655,130 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01102,120,366 - 102,121,079 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0195,412,700 - 95,413,413 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,855,270 - 91,855,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,855,270 - 91,855,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,983,020 - 92,983,733 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4188,115,883 - 88,116,596 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera182,599,223 - 82,599,936 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Photoreceptor signaling: supporting vision across a wide range of light intensities. Arshavsky VY and Burns ME, J Biol Chem. 2012 Jan 13;287(3):1620-6. Epub 2011 Nov 10.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:14625292   PMID:23555598  


Genomics

Comparative Map Data
Rgs9bp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8197,386,326 - 97,387,039 (-)NCBIGRCr8
mRatBN7.2188,249,438 - 88,250,151 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl188,249,438 - 88,250,151 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx193,654,417 - 93,655,130 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01102,120,366 - 102,121,079 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0195,412,700 - 95,413,413 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0191,855,270 - 91,855,983 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl191,855,270 - 91,855,983 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,983,020 - 92,983,733 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4188,115,883 - 88,116,596 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera182,599,223 - 82,599,936 (-)NCBICelera
Cytogenetic Map1q21NCBI
RGS9BP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381932,675,848 - 32,678,300 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1932,675,848 - 32,678,300 (+)EnsemblGRCh38hg38GRCh38
GRCh371933,166,754 - 33,169,206 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361937,858,153 - 37,861,046 (+)NCBINCBI36Build 36hg18NCBI36
Celera1929,859,945 - 29,862,839 (+)NCBICelera
Cytogenetic Map19q13.11NCBI
HuRef1929,669,560 - 29,672,454 (+)NCBIHuRef
CHM1_11933,167,594 - 33,170,488 (+)NCBICHM1_1
T2T-CHM13v2.01935,194,580 - 35,197,034 (+)NCBIT2T-CHM13v2.0
Rgs9bp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39735,278,418 - 35,285,007 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl735,278,418 - 35,285,007 (-)EnsemblGRCm39 Ensembl
GRCm38735,578,993 - 35,585,582 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl735,578,993 - 35,585,582 (-)EnsemblGRCm38mm10GRCm38
MGSCv37736,364,012 - 36,370,601 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36735,287,766 - 35,294,304 (-)NCBIMGSCv36mm8
Celera730,707,740 - 30,714,332 (-)NCBICelera
Cytogenetic Map7B2NCBI
cM Map721.37NCBI
Rgs9bp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554685,312,880 - 5,313,587 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554685,311,318 - 5,313,612 (-)NCBIChiLan1.0ChiLan1.0
RGS9BP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22038,648,280 - 38,654,878 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11940,645,077 - 40,651,653 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01929,595,159 - 29,597,612 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11938,342,812 - 38,345,706 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1938,343,663 - 38,344,370 (+)Ensemblpanpan1.1panPan2
RGS9BP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11119,316,799 - 119,322,856 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1119,321,909 - 119,322,625 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1118,716,712 - 118,722,529 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01119,917,718 - 119,923,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1119,922,821 - 119,923,531 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11119,481,003 - 119,486,813 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01119,101,074 - 119,106,893 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01120,161,043 - 120,166,863 (-)NCBIUU_Cfam_GSD_1.0
Rgs9bp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093498,601,570 - 8,603,649 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365703,042,773 - 3,043,480 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365703,042,233 - 3,043,884 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RGS9BP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl642,560,113 - 42,565,154 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1642,560,059 - 42,563,179 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2638,170,058 - 38,172,175 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RGS9BP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1627,724,956 - 27,727,801 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl627,725,881 - 27,726,588 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660735,300,966 - 5,303,735 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rgs9bp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247947,545,852 - 7,546,559 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247947,545,832 - 7,552,478 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rgs9bp
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:124
Count of miRNA genes:100
Interacting mature miRNAs:104
Transcripts:ENSRNOT00000017172
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)178479925123479925Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)185424647100358001Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)177876254106047988Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)182174743118944897Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889494Scort2Serum corticosterone level QTL 24.2blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)180592172125592172Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
61344Bp29Blood pressure QTL 297.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)178350581123350581Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)177494165122494165Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)number of 20 x 20 cm floor squares crossed into, out of or within a discrete space in an experimental apparatus (CMO:0001514)183547917128547917Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)15034351099980958Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)177857876122857876Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)178430536123430536Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)17843075491209302Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)187580395150700247Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 1 44 99 85 81 55 23 55 6 194 84 79 45 47 26

Sequence


Ensembl Acc Id: ENSRNOT00000017172   ⟹   ENSRNOP00000017172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl188,249,438 - 88,250,151 (-)Ensembl
Rnor_6.0 Ensembl191,855,270 - 91,855,983 (-)Ensembl
RefSeq Acc Id: NM_001109142   ⟹   NP_001102612
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8197,386,326 - 97,387,039 (-)NCBI
mRatBN7.2188,249,438 - 88,250,151 (-)NCBI
Rnor_6.0191,855,270 - 91,855,983 (-)NCBI
Rnor_5.0192,983,020 - 92,983,733 (-)NCBI
RGSC_v3.4188,115,883 - 88,116,596 (-)RGD
Celera182,599,223 - 82,599,936 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102612 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM07614 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000017172.1
RefSeq Acc Id: NP_001102612   ⟸   NM_001109142
- UniProtKB: D3ZC97 (UniProtKB/TrEMBL),   A6JAC0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000017172   ⟸   ENSRNOT00000017172

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZC97-F1-model_v2 AlphaFold D3ZC97 1-237 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561747 AgrOrtholog
BioCyc Gene G2FUF-59968 BioCyc
Ensembl Genes ENSRNOG00000012877 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017172.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.70 UniProtKB/TrEMBL
InterPro RGS7BP/RGS9BP UniProtKB/TrEMBL
KEGG Report rno:499132 UniProtKB/TrEMBL
NCBI Gene 499132 ENTREZGENE
PANTHER PTHR21029 UniProtKB/TrEMBL
  PTHR21029:SF1 UniProtKB/TrEMBL
PhenoGen Rgs9bp PhenoGen
RatGTEx ENSRNOG00000012877 RatGTEx
UniProt A6JAC0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZC97 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-09 Rgs9bp  regulator of G protein signaling 9 binding protein  Rgs9bp  regulator of G-protein signalling 9 binding protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Rgs9bp  regulator of G-protein signalling 9 binding protein  RGD1561747_predicted  similar to RGS9-1 anchor protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1561747_predicted  similar to RGS9-1 anchor protein (predicted)  LOC499132  similar to RGS9-1 anchor protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499132  similar to RGS9-1 anchor protein      Symbol and Name status set to provisional 70820 PROVISIONAL