Sradr1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Sradr1 (Stress Responsive Adrenal Weight QTL 1) Rattus norvegicus

Symbol: Sradr1
Name: Stress Responsive Adrenal Weight QTL 1
RGD ID: 1358359
Trait: adrenal gland mass   (VT:0010420)    
Measurement Type: both adrenal glands wet weight   (CMO:0000164)    
LOD Score: 4.74
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8139,728,272 - 132,889,942RGD_MAPPER_PIPELINE
mRatBN7.2130,882,023 - 123,479,925RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0125,951,907 - 130,917,265RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0127,404,590 - 131,959,064RGDRnor5.0
RGSC_v3.4128,716,493 - 124,749,065RGDRGSC3.4
RGSC_v3.1156,717,951 - 124,827,408RGD
Cross Type: Not Available
Strains Crossed: WKY/NHsd F344/NHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sradr1Ratabnormal adrenal gland morphology  IDA 1598980 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sradr1Ratboth adrenal glands wet weight  IDA 1598980 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sradr1Ratcontrol condition  IDA 1598980 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sradr1Ratpost excision weight measurement  IDA 1598980 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sradr1RatF344/NHsd  IEA 1598980 RGD 
Sradr1RatWKY/NHsd  IEA 1598980 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Sradr1Ratadrenal gland mass  IDA 1598980 RGD 


#
Reference Title
Reference Citation
1. Genetic analysis of the stress-responsive adrenocortical axis. Solberg LC, etal., Physiol Genomics. 2006 Nov 27;27(3):362-9. Epub 2006 Aug 8.


1 to 20 of 2443 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
402231757LOC134484987uncharacterized LOC13448498713982104939825586Rat
40996352Rab1a-ps3RAB1A, member RAS oncogene family, pseudogene 313997696539977617Rat
41356485Rab1a-ps4RAB1A, member RAS oncogene family, pseudogene 414052949040530103Rat
402291513LOC134484988uncharacterized LOC13448498814067174240677946Rat
40948223Nid2-ps13nidogen 2, pseudogene 1314081701940841135Rat
41102376LOC120100090uncharacterized LOC12010009014090078640929375Rat
41037329LOC120099103uncharacterized LOC12009910314099010241039487Rat
7734973Nid2l2nidogen 2 like 214103947641092171Rat
1586100Rab1-ps1RAB1, member RAS oncogene family, pseudogene 114120148941202992Rat
41258807LOC120100091uncharacterized LOC12010009114143369741440310Rat
402066718LOC134482592uncharacterized LOC13448259214144227641445438Rat
7514941Cd99l3CD99 molecule like 314172198342009280Rat
41182833Nid2-ps6nidogen 2, pseudogene 614195493141969081Rat
1566284Hnrnpa1-ps47heterogeneous nuclear ribonucleoprotein A1, pseudogene 4714200768442009238Rat
402193606LOC134482598uncharacterized LOC13448259814202012942028447Rat
41123377LOC120100087uncharacterized LOC12010008714202119442045570Rat
40978443LOC120100095uncharacterized LOC12010009514206415342076792Rat
7544841LOC102555832uncharacterized LOC10255583214208622242091472Rat
620538Ppp1r14cprotein phosphatase 1, regulatory (inhibitor) subunit 14c14217797742358654Rat
1309288Iydiodotyrosine deiodinase14241009942425414Rat

1 to 20 of 2443 rows
1 to 20 of 276 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10279D1Wox1214718672117286721319Ratregion
10280D1Arb3525018672107786721327Ratregion
10281D1Mgh2719518672685986727054Ratregion
10332D1Arb3229318699257386992866Ratregion
10337D1Mgh514218755858787558729Ratregion
10338D1Wox1517218690866386908835Ratregion
10442D1Wox1620219130241391302615Ratregion
10444D1Wox178319072193590722018Ratregion
10613D1Arb103931117834041117834434Ratregion
10646D1Wox3011518793260087932715Ratregion
10670D9Arb149215809582758096319Ratregion
10839D1Wox181201103780943103781063Ratregion
11145D1Arb3130217474832274748624Ratregion
33931D1Mit108516550824165508326Ratregion
34332D1Mgh612719692710096927227Ratregion
34381D1Mgh71411115183611115183752Ratregion
34465D1Mgh421315151134451511557Ratregion
33660D1Mit914715190920651909353Ratregion
33686D1Mit112731111404407111404680Ratregion
36001D1Rat1051421131963371131963513Ratregion
1 to 20 of 276 rows

Flank 1: (D1Mit1)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.1156,717,951 - 56,718,312RGD
RH 3.4 Map1683.1UniSTS
RH 3.4 Map1683.1RGD
RH 2.0 Map1413.3RGD
SHRSP x BN Map132.6799RGD
Peak: (D1Rat24)
Rat AssemblyChrPosition (strand)Source
GRCr8186,309,021 - 86,309,194 (+)Marker Load Pipeline
mRatBN7.2177,180,888 - 77,181,061 (+)MAPPER
Rnor_6.0178,434,500 - 78,434,672NCBI
Rnor_5.0179,681,741 - 79,681,913UniSTS
RGSC_v3.4176,732,693 - 76,732,866RGD
RGSC_v3.4176,732,694 - 76,732,866UniSTS
RGSC_v3.1176,810,805 - 76,810,977RGD
Celera171,666,540 - 71,666,712UniSTS
RH 3.4 Map1772.5RGD
RH 3.4 Map1772.5UniSTS
SHRSP x BN Map140.07RGD
SHRSP x BN Map140.07UniSTS
FHH x ACI Map139.0099RGD
Cytogenetic Map1q21UniSTS
Flank 2: (D1Rat35)
Rat AssemblyChrPosition (strand)Source
GRCr81132,889,797 - 132,889,942 (+)Marker Load Pipeline
mRatBN7.21123,479,780 - 123,479,925 (+)MAPPER
Rnor_6.01130,917,121 - 130,917,265NCBI
Rnor_5.01131,958,920 - 131,959,064UniSTS
RGSC_v3.41124,748,921 - 124,749,065UniSTS
RGSC_v3.41124,748,920 - 124,749,065RGD
RGSC_v3.11124,827,264 - 124,827,408RGD
Celera1115,650,615 - 115,650,759UniSTS
RH 3.4 Map11454.0RGD
RH 3.4 Map11454.0UniSTS
SHRSP x BN Map159.42RGD
SHRSP x BN Map159.42UniSTS
Cytogenetic Map1 RGD


1 to 10 of 101 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1131179947176179947Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1132760429191848948Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
631569Bp93Blood pressure QTL 930.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1115183611131244255Rat
631570Bp94Blood pressure QTL 940.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1132889797152403053Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat

1 to 10 of 101 rows


Note Type Note Reference
qtl_general software package used: Pseudomarker (release 1.02) 1598980
qtl_general number of animals used: 486 F2 animals 1598980