Afdn (afadin, adherens junction formation factor) - Rat Genome Database

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Gene: Afdn (afadin, adherens junction formation factor) Rattus norvegicus
Analyze
Symbol: Afdn
Name: afadin, adherens junction formation factor
RGD ID: 708561
Description: Enables LIM domain binding activity. Involved in dendrite arborization; positive regulation of mini excitatory postsynaptic potential; and regulation of cell morphogenesis. Located in adherens junction; axon; and somatodendritic compartment. Colocalizes with excitatory synapse. Orthologous to human AFDN (afadin, adherens junction formation factor); PARTICIPATES IN platelet-derived growth factor signaling pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Af6; afadin; Mllt4; myeloid/lymphoid or mixed lineage-leukemia translocation to 4 homolog; myeloid/lymphoid or mixed lineage-leukemia translocation to 4 homolog (Drosophila); myeloid/lymphoid or mixed-lineage leukemia; myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4; protein Af-6; translocated to, 4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8158,041,065 - 58,170,505 (+)NCBIGRCr8
mRatBN7.2153,905,344 - 54,034,216 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,905,373 - 54,034,216 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx155,490,165 - 55,631,752 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0161,552,688 - 61,681,463 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0155,432,745 - 55,574,335 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0153,713,873 - 53,861,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,715,693 - 53,802,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,955,635 - 55,043,460 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4148,827,687 - 48,913,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1148,790,891 - 48,914,438 (+)NCBI
Celera150,355,039 - 50,445,230 (-)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. Asada M, etal., J Biol Chem 2003 Feb 7;278(6):4103-11.
2. Junctional adhesion molecule interacts with the PDZ domain-containing proteins AF-6 and ZO-1. Ebnet K, etal., J Biol Chem. 2000 Sep 8;275(36):27979-88.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. AF-6 is a positive modulator of the PINK1/parkin pathway and is deficient in Parkinson's disease. Haskin J, etal., Hum Mol Genet. 2013 May 15;22(10):2083-96. doi: 10.1093/hmg/ddt058. Epub 2013 Feb 7.
6. nArgBP2, a novel neural member of ponsin/ArgBP2/vinexin family that interacts with synapse-associated protein 90/postsynaptic density-95-associated protein (SAPAP). Kawabe H, etal., J Biol Chem 1999 Oct 22;274(43):30914-8.
7. Binding between the junctional proteins afadin and PLEKHA7 and implication in the formation of adherens junction in epithelial cells. Kurita S, etal., J Biol Chem. 2013 Oct 11;288(41):29356-68. doi: 10.1074/jbc.M113.453464. Epub 2013 Aug 29.
8. Correlated break at PARK2/FRA6E and loss of AF-6/Afadin protein expression are associated with poor outcome in breast cancer. Letessier A, etal., Oncogene. 2007 Jan 11;26(2):298-307. doi: 10.1038/sj.onc.1209772. Epub 2006 Jul 3.
9. Temporal and spatial localization of nectin-1 and l-afadin during synaptogenesis in hippocampal neurons. Lim ST, etal., J Comp Neurol. 2008 Mar 10;507(2):1228-44.
10. Afadin: A novel actin filament-binding protein with one PDZ domain localized at cadherin-based cell-to-cell adherens junction. Mandai K, etal., J Cell Biol 1997 Oct 20;139(2):517-28.
11. s-Afadin binds to MAGUIN/Cnksr2 and regulates the localization of the AMPA receptor and glutamatergic synaptic response in hippocampal neurons. Maruo T, etal., J Biol Chem. 2023 Apr;299(4):103040. doi: 10.1016/j.jbc.2023.103040. Epub 2023 Feb 18.
12. Spermine increases arginase activity in the liver after carbon tetrachloride-induced hepatic injury in Long-Evans rats. Mendez JD, etal., Biomed Pharmacother. 2006 Feb;60(2):82-5. Epub 2005 Dec 27.
13. Purification and molecular cloning of succinyltransferase of the rat alpha-ketoglutarate dehydrogenase complex. Absence of a sequence motif of the putative E3 and/or E1 binding site. Nakano K, etal., J Biol Chem 1991 Oct 5;266(28):19013-7.
14. Involvement of LMO7 in the association of two cell-cell adhesion molecules, nectin and E-cadherin, through afadin and alpha-actinin in epithelial cells. Ooshio T, etal., J Biol Chem 2004 Jul 23;279(30):31365-73. Epub 2004 May 12.
15. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
16. Drebrin preserves endothelial integrity by stabilizing nectin at adherens junctions. Rehm K, etal., J Cell Sci. 2013 Aug 15;126(Pt 16):3756-69. doi: 10.1242/jcs.129437. Epub 2013 Jun 7.
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Afadin is required for maintenance of dendritic structure and excitatory tone. Srivastava DP, etal., J Biol Chem. 2012 Oct 19;287(43):35964-74. doi: 10.1074/jbc.M112.363358. Epub 2012 Sep 4.
19. Two cell adhesion molecules, nectin and cadherin, interact through their cytoplasmic domain-associated proteins. Tachibana K, etal., J Cell Biol. 2000 Sep 4;150(5):1161-76.
Additional References at PubMed
PMID:8889548   PMID:9707552   PMID:10225955   PMID:10704870   PMID:11731229   PMID:12203721   PMID:12515806   PMID:15489334   PMID:15509704   PMID:15728677   PMID:16301177   PMID:16396499  
PMID:16641100   PMID:16882694   PMID:17013812   PMID:18604197   PMID:19461049   PMID:21478912   PMID:22027834   PMID:22512338   PMID:23885123   PMID:24567331   PMID:25100583   PMID:25468996  
PMID:25808489   PMID:25893857   PMID:27815408   PMID:30268521   PMID:30463011   PMID:30572094   PMID:32357304  


Genomics

Comparative Map Data
Afdn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8158,041,065 - 58,170,505 (+)NCBIGRCr8
mRatBN7.2153,905,344 - 54,034,216 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,905,373 - 54,034,216 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx155,490,165 - 55,631,752 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0161,552,688 - 61,681,463 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0155,432,745 - 55,574,335 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0153,713,873 - 53,861,918 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl153,715,693 - 53,802,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0154,955,635 - 55,043,460 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4148,827,687 - 48,913,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1148,790,891 - 48,914,438 (+)NCBI
Celera150,355,039 - 50,445,230 (-)NCBICelera
Cytogenetic Map1q12NCBI
AFDN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386167,826,564 - 167,972,023 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6167,826,893 - 167,972,023 (+)EnsemblGRCh38hg38GRCh38
GRCh376168,227,244 - 168,372,703 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366167,970,520 - 168,115,552 (+)NCBINCBI36Build 36hg18NCBI36
Build 346168,046,368 - 168,171,498NCBI
Celera6168,944,733 - 169,081,690 (+)NCBICelera
Cytogenetic Map6q27NCBI
HuRef6165,693,043 - 165,800,385 (+)NCBIHuRef
CHM1_16168,490,726 - 168,635,428 (+)NCBICHM1_1
T2T-CHM13v2.06169,164,770 - 169,309,528 (+)NCBIT2T-CHM13v2.0
Afdn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391713,980,735 - 14,126,059 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1713,980,801 - 14,126,412 (+)EnsemblGRCm39 Ensembl
GRCm381713,760,391 - 13,905,798 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1713,760,539 - 13,906,150 (+)EnsemblGRCm38mm10GRCm38
MGSCv371713,897,548 - 14,042,801 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361713,497,079 - 13,642,343 (+)NCBIMGSCv36mm8
Celera1714,603,626 - 14,705,325 (+)NCBICelera
Cytogenetic Map17A1- A2NCBI
cM Map178.95NCBI
Afdn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543914,326,793 - 14,428,850 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543914,324,910 - 14,428,846 (-)NCBIChiLan1.0ChiLan1.0
AFDN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25188,019,190 - 188,164,989 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16185,907,465 - 186,052,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06165,778,026 - 165,923,685 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16170,776,707 - 170,882,784 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6170,775,904 - 170,882,784 (+)Ensemblpanpan1.1panPan2
AFDN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1155,435,451 - 55,535,534 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl155,435,472 - 55,535,543 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,188,344 - 56,325,812 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0155,579,883 - 55,717,395 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1155,476,722 - 55,614,176 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0155,323,987 - 55,461,386 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0155,950,758 - 56,088,230 (+)NCBIUU_Cfam_GSD_1.0
Afdn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946149,626,431 - 149,719,240 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648916,878,321 - 16,971,311 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648916,878,423 - 16,971,229 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFDN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl11,570,272 - 1,698,694 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.111,569,652 - 1,698,475 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212,720,204 - 2,814,551 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AFDN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11395,646,820 - 95,788,662 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1395,646,887 - 95,789,437 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604067,478,670 - 67,620,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Afdn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478511,551,687 - 11,697,921 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478511,549,805 - 11,698,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Afdn
513 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:255
Count of miRNA genes:172
Interacting mature miRNAs:199
Transcripts:ENSRNOT00000032667, ENSRNOT00000042807
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat

Markers in Region
RH129150  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2154,033,983 - 54,034,189 (-)MAPPERmRatBN7.2
Rnor_6.0153,713,900 - 53,714,105NCBIRnor6.0
Rnor_5.0154,955,662 - 54,955,867UniSTSRnor5.0
RGSC_v3.4148,912,943 - 48,913,148UniSTSRGSC3.4
Celera150,355,066 - 50,355,271UniSTS
RH 3.4 Map1636.2UniSTS
Cytogenetic Map1q12UniSTS
RH129198  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2154,033,983 - 54,034,194 (-)MAPPERmRatBN7.2
Rnor_6.0153,713,895 - 53,714,105NCBIRnor6.0
Rnor_5.0154,955,657 - 54,955,867UniSTSRnor5.0
RGSC_v3.4148,912,943 - 48,913,153UniSTSRGSC3.4
Celera150,355,061 - 50,355,271UniSTS
RH 3.4 Map1636.6UniSTS
Cytogenetic Map1q12UniSTS
RH143433  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2153,970,484 - 53,970,679 (-)MAPPERmRatBN7.2
Rnor_6.0153,776,437 - 53,776,631NCBIRnor6.0
Rnor_5.0155,018,199 - 55,018,393UniSTSRnor5.0
Celera150,418,540 - 50,418,734UniSTS
RH 3.4 Map1646.3UniSTS
Cytogenetic Map1q12UniSTS
RH143971  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2154,026,890 - 54,027,065 (-)MAPPERmRatBN7.2
Rnor_6.0153,720,964 - 53,721,138NCBIRnor6.0
Rnor_5.0154,962,726 - 54,962,900UniSTSRnor5.0
RGSC_v3.4148,905,852 - 48,906,026UniSTSRGSC3.4
Celera150,362,188 - 50,362,362UniSTS
RH 3.4 Map1651.5UniSTS
Cytogenetic Map1q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 34 24 10 24 6 6 74 35 41 11 6
Low 3 23 17 9 17 2 5 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063282574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA963026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA511204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK476731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN542111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EV767501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U83230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U83231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000032667   ⟹   ENSRNOP00000029044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,905,373 - 54,025,006 (+)Ensembl
Rnor_6.0 Ensembl153,715,693 - 53,802,658 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096238   ⟹   ENSRNOP00000079686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,943,977 - 54,034,216 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096510   ⟹   ENSRNOP00000094008
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,943,977 - 54,034,216 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106034   ⟹   ENSRNOP00000088861
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,905,373 - 54,034,216 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107704   ⟹   ENSRNOP00000078878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl153,905,373 - 54,034,216 (+)Ensembl
RefSeq Acc Id: NM_013217   ⟹   NP_037349
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,641 - 58,170,505 (+)NCBI
mRatBN7.2153,905,344 - 54,034,216 (+)NCBI
Rnor_6.0153,713,873 - 53,861,918 (-)NCBI
Rnor_5.0154,955,635 - 55,043,460 (-)NCBI
RGSC_v3.4148,827,687 - 48,913,175 (+)RGD
Celera150,355,039 - 50,445,230 (-)RGD
Sequence:
RefSeq Acc Id: XM_063282455   ⟹   XP_063138525
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,066 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282461   ⟹   XP_063138531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,066 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282468   ⟹   XP_063138538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,066 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282472   ⟹   XP_063138542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,066 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282476   ⟹   XP_063138546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,065 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282479   ⟹   XP_063138549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,070 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282481   ⟹   XP_063138551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,065 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282491   ⟹   XP_063138561
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,070 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282492   ⟹   XP_063138562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,071 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282494   ⟹   XP_063138564
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,066 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282497   ⟹   XP_063138567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282501   ⟹   XP_063138571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282503   ⟹   XP_063138573
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282505   ⟹   XP_063138575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282507   ⟹   XP_063138577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,070 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282509   ⟹   XP_063138579
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282513   ⟹   XP_063138583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282518   ⟹   XP_063138588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282519   ⟹   XP_063138589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,072 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282523   ⟹   XP_063138593
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282526   ⟹   XP_063138596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,071 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282529   ⟹   XP_063138599
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,071 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282534   ⟹   XP_063138604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282537   ⟹   XP_063138607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282539   ⟹   XP_063138609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282542   ⟹   XP_063138612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282545   ⟹   XP_063138615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282551   ⟹   XP_063138621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282554   ⟹   XP_063138624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282558   ⟹   XP_063138628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282559   ⟹   XP_063138629
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282560   ⟹   XP_063138630
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,570 - 58,163,383 (+)NCBI
RefSeq Acc Id: XM_063282561   ⟹   XP_063138631
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,161,165 (+)NCBI
RefSeq Acc Id: XM_063282563   ⟹   XP_063138633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,068 - 58,163,383 (+)NCBI
RefSeq Acc Id: XM_063282565   ⟹   XP_063138635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,073 - 58,163,383 (+)NCBI
RefSeq Acc Id: XM_063282572   ⟹   XP_063138642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,119,370 - 58,170,501 (+)NCBI
RefSeq Acc Id: XM_063282574   ⟹   XP_063138644
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8158,041,077 - 58,170,501 (+)NCBI
Protein Sequences
Protein RefSeqs NP_037349 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138525 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138531 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138538 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138542 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138546 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138549 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138551 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138561 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138562 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138564 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138567 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138571 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138573 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138575 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138577 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138579 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138583 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138588 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138589 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138593 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138596 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138599 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138604 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138607 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138609 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138612 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138615 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138621 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138624 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138628 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138629 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138630 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138631 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138633 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138635 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138642 (Get FASTA)   NCBI Sequence Viewer  
  XP_063138644 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC53390 (Get FASTA)   NCBI Sequence Viewer  
  AAC53391 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000029044.7
  ENSRNOP00000078878.1
  ENSRNOP00000079686.1
  ENSRNOP00000088861
  ENSRNOP00000088861.1
  ENSRNOP00000094008.1
  ENSRNOP00060001274
  ENSRNOP00065020446
GenBank Protein O35889 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_037349   ⟸   NM_013217
- UniProtKB: O35890 (UniProtKB/Swiss-Prot),   O35889 (UniProtKB/Swiss-Prot),   A6KS86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000029044   ⟸   ENSRNOT00000032667
RefSeq Acc Id: ENSRNOP00000079686   ⟸   ENSRNOT00000096238
RefSeq Acc Id: ENSRNOP00000078878   ⟸   ENSRNOT00000107704
RefSeq Acc Id: ENSRNOP00000088861   ⟸   ENSRNOT00000106034
RefSeq Acc Id: ENSRNOP00000094008   ⟸   ENSRNOT00000096510
RefSeq Acc Id: XP_063138546   ⟸   XM_063282476
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063138551   ⟸   XM_063282481
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063138525   ⟸   XM_063282455
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138564   ⟸   XM_063282494
- Peptide Label: isoform X10
RefSeq Acc Id: XP_063138531   ⟸   XM_063282461
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063138538   ⟸   XM_063282468
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063138542   ⟸   XM_063282472
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063138567   ⟸   XM_063282497
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063138579   ⟸   XM_063282509
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063138573   ⟸   XM_063282503
- Peptide Label: isoform X13
RefSeq Acc Id: XP_063138583   ⟸   XM_063282513
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063138575   ⟸   XM_063282505
- Peptide Label: isoform X14
RefSeq Acc Id: XP_063138588   ⟸   XM_063282518
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063138633   ⟸   XM_063282563
- Peptide Label: isoform X34
RefSeq Acc Id: XP_063138631   ⟸   XM_063282561
- Peptide Label: isoform X33
RefSeq Acc Id: XP_063138549   ⟸   XM_063282479
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063138577   ⟸   XM_063282507
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063138561   ⟸   XM_063282491
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063138596   ⟸   XM_063282526
- Peptide Label: isoform X21
RefSeq Acc Id: XP_063138599   ⟸   XM_063282529
- Peptide Label: isoform X22
RefSeq Acc Id: XP_063138562   ⟸   XM_063282492
- Peptide Label: isoform X9
RefSeq Acc Id: XP_063138589   ⟸   XM_063282519
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063138635   ⟸   XM_063282565
- Peptide Label: isoform X35
RefSeq Acc Id: XP_063138644   ⟸   XM_063282574
- Peptide Label: isoform X37
RefSeq Acc Id: XP_063138607   ⟸   XM_063282537
- Peptide Label: isoform X24
RefSeq Acc Id: XP_063138604   ⟸   XM_063282534
- Peptide Label: isoform X23
RefSeq Acc Id: XP_063138571   ⟸   XM_063282501
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063138609   ⟸   XM_063282539
- Peptide Label: isoform X25
RefSeq Acc Id: XP_063138612   ⟸   XM_063282542
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063138621   ⟸   XM_063282551
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063138628   ⟸   XM_063282558
- Peptide Label: isoform X30
RefSeq Acc Id: XP_063138593   ⟸   XM_063282523
- Peptide Label: isoform X20
- UniProtKB: A0A8I5ZLU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138615   ⟸   XM_063282545
- Peptide Label: isoform X27
RefSeq Acc Id: XP_063138624   ⟸   XM_063282554
- Peptide Label: isoform X29
RefSeq Acc Id: XP_063138629   ⟸   XM_063282559
- Peptide Label: isoform X31
RefSeq Acc Id: XP_063138630   ⟸   XM_063282560
- Peptide Label: isoform X32
RefSeq Acc Id: XP_063138642   ⟸   XM_063282572
- Peptide Label: isoform X36
Protein Domains
Dilute   FHA   PDZ   Ras-associating

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O35889-F1-model_v2 AlphaFold O35889 1-1829 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708561 AgrOrtholog
BioCyc Gene G2FUF-61408 BioCyc
Ensembl Genes ENSRNOG00000023753 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00060001313 UniProtKB/Swiss-Prot
  ENSRNOG00065015321 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000032667.8 UniProtKB/TrEMBL
  ENSRNOT00000096238.1 UniProtKB/TrEMBL
  ENSRNOT00000096510.1 UniProtKB/TrEMBL
  ENSRNOT00000106034 ENTREZGENE
  ENSRNOT00000106034.1 UniProtKB/Swiss-Prot
  ENSRNOT00000107704.1 UniProtKB/TrEMBL
  ENSRNOT00060002078 UniProtKB/Swiss-Prot
  ENSRNOT00065025971 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.42.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.200.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Afadin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CBD_Afadin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Dilute_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FHA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SMAD_FHA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:26955 UniProtKB/Swiss-Prot
NCBI Gene 26955 ENTREZGENE
PANTHER AFADIN UniProtKB/Swiss-Prot
  AFADIN UniProtKB/Swiss-Prot
  AFADIN UniProtKB/TrEMBL
  AFADIN UniProtKB/TrEMBL
Pfam DIL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF00788 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Afdn PhenoGen
PROSITE DILUTE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS50200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023753 RatGTEx
  ENSRNOG00060001313 RatGTEx
  ENSRNOG00065015321 RatGTEx
SMART DIL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PDZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54236 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZLU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZNL2_RAT UniProtKB/TrEMBL
  A0A8I6AL62_RAT UniProtKB/TrEMBL
  A6KS86 ENTREZGENE, UniProtKB/TrEMBL
  AFAD_RAT UniProtKB/Swiss-Prot
  F1LT10_RAT UniProtKB/TrEMBL
  O35889 ENTREZGENE
  O35890 ENTREZGENE
UniProt Secondary O35890 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-05 Afdn  afadin, adherens junction formation factor  Mllt4  myeloid/lymphoid or mixed-lineage leukemia; translocated to, 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-01 Mllt4  myeloid/lymphoid or mixed-lineage leukemia; translocated to, 4  Mllt4  myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-19 Mllt4  myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4  Mllt4  myeloid/lymphoid or mixed lineage-leukemia translocation to 4 homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-26 Mllt4  myeloid/lymphoid or mixed lineage-leukemia translocation to 4 homolog (Drosophila)  Af6  afadin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-10-07 Af6        Symbol and Name status set to provisional 70820 PROVISIONAL