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Gene: LOC102550786 (uncharacterized LOC102550786) Rattus norvegicus

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Symbol:

LOC102550786

Name:

uncharacterized LOC102550786

RGD ID:

7595988

Description:

Type:

ncrna

RefSeq Status:

MODEL

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	64,794,985 - 64,801,479 (+)	NCBI		GRCr8
mRatBN7.2	1	56,121,874 - 56,128,366 (+)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	1	57,152,149 - 57,163,021 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	58,334,079 - 58,344,942 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	1	52,332,121 - 52,342,993 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Variants in LOC102550786
13 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49393172	94393172	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49393289	199050459	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53895117	82174945	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49393172	159356837	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	48963584	144267916	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	11835181	56835181	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49361465	82174945	Rat
724520	Bp145	Blood pressure QTL 145	2.1	0.0024	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	20784828	65784828	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	53863041	90532583	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	50343510	99980958	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53895117	82174945	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	19333571	56983283	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XR_342719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_342720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_342721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_342722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_350073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_350074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_350075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_350076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_590002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_598713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XR_350073

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	64,794,985 - 64,801,479 (+)	NCBI
mRatBN7.2	1	56,121,874 - 56,128,366 (+)	NCBI
Rnor_6.0	1	57,152,149 - 57,162,983 (-)	NCBI
Rnor_5.0	1	58,334,079 - 58,344,942 (-)	NCBI

Sequence:

show sequence

CTTTATCTCAGCCTCTGGAAACATGTTTCCTAAGTCTGTTAGTAGGCACGAGAAGCTGCCTTCTTCCTGTCCACTGCCAAGAGTATCTGCCTTGCAAAAGGCTTTGGGCCAGATCATCACCTTGCAGA
ACCTGCTTCACTGGGAAAGATGCCGGGCAGCCTTGGGGGAGCCGTAGGTGGGAGCATCAGCAAAGGCCATAGGAAATGTTCTCTCAAGAAGGGCCACAGAGAAAAAGAAGAGCTTAGCTGCTTTCCAG
ACTGTCCTGGCTATGAGGACCCGTGAGTCCCCAACTCTGCCATCTATCTTGTCAAGTTTAATGAAGCCGCTTCCTAACATCCTTACCTGCTGTTTGTAGAAAAGGCTACCGAATCCCTCTCTCTACCA
TGAACTTAGCTCTTGATGTACTTTAACTGACGTAAAACAGTAACACAGAAGCACTGGATGTGTGGTCAGGGGAAGAAGGCGGTCCGACTGTGATGCCGGAATTCAGAGAATTAACCAGAGAGATGGCC
GTCCCCGGAGGGCCTGTGTTCTCTCGGTCCTATCATGTTGCACGGCCACCACCACTAGCAGTACTTCACACGTTCTTTGTATCACCTGTGTTCAGAGGTAGAGCAGTGACTTCTGGCCACCATGCATG
AAAAGCAACCGAATCAAAATCCAGACAGCAACAATCTCCTGGGAGATGTCCTGTCACATGTTTTTGAAACAGTTTCACTCTCGAGCCTGTGCGCATCCGAAGTCTCCCAGATGCTGAGGTTCCAGACA
TGTGTTACCACATTCAGCTGAGTGTTAGATTGTGTTGTTGTTCTGAGTTTCTAGGGACTCTTTATCACAGAAGTGATAGCTTGGTCAGGGAGGATCGGACGGAACACGGTCCCAGAGAAGAAAGACCC
AATCCCAAGGCCGTGAGCACTCAACAAAGTGTAGGTTCCCTCGGCATCCATTTCTGTGACTTGCAAAAATTCTAGGCCTTGGTCTCTGAATGGGTGACTGGGCCTTAGAGTTGACATTTCTGAAAGAT
TAAACATCTGTTGGCCCTCAAAACCCATTTGTCTTGCACACTTAGCTTTTATGGCATCTTACTCCCAAGAGCAACATGTTACAAGCCCTGTGGCAGGAGGGAGAAGATAGGCCATGCATGTCCCTTCT
CATTCTGTGCTTCATTGAATAGGGATTTTTATGCCAGTATGTCTACATCACAACTGGGCTTATGCATGGTGTGTACATGAACAGATTCATACAACTACACACACCCAGATATCCCATGCACACTGGAA
ACCTTTCCTGGGTAGCTTTGCTCAGTAGAAGCTACAGATGAGGGCAAATACTGCGGAGGACCTCCCTGCAGGTGCTGGGAATCCCCCTGCCTCCTACCCCAACCTCCATGTTGGCCTAGGTATGTGTG
GAGAAGAAACTGCATCTGTCTGGCTTGGTCAGGAAAGCAGAGGCCATGTACTCTTCAGGCAAACAACAGAGTCCATCAAATAGAGCGAGAAGATTCTCAAACCAGAAATCTTCAGAGAGGGTCCATTG
GCCTCTAAACAGCATCGTGCTGTCTGGAAAGAGAGATCCCTTAGAGATGATCCCTCTCAGCCAGAGCTTTGCGGGACACAGCCAGCCTTTTTATTCTCTCTAATGACTACCGACACCACCTTTTCCAG
AAAGGAAGCAGAATCTGAGGAGACCAACGTAGACCAGTCATGAGCTCCGGTGCCTTCAAGCTCAGGGATTGGATCAGTCTGAGGGTCTAAGGTTCCACCCACTTCCTCGCCGGCTGAGGGGAGGTCCA
ATTCAGGTCTAGTCACTAATGGCCTGCACACTGGAACCAGAAGCCTTTGGGGGGCAGGTGTGGGGGCAGGGGGGATACGACTGCCATTTCCTCTGAGCTCTCCCCTGGTCTCCCCTGAACATAATTCC
TGAGCAGTGACCTCCAGCAGAGTGTGAGGTGACTTCCTTCCAAGCAATGACAGAGGGGAACGACAGAGGAATACCCAGGCTTTTTGGTTCTGGGGGTCACAACGCCCCCAAACAATCTGCACGTGGCT
CTCGAGAGCTCAAGGACCAGTTTAAGGTAGGTTTCAACCTCAAATTCTAAGTATGCCTGATCTTCTGACCTTCCCTCCACCCCGCCCCCAGAAAATTCCAATCGTGGGGAAGATAATGAGGCCCCCAA
GTTACTCCTAACAGGACCCAGGCTAGACGCCCACCCGGTTACACCCACCTGGCTCAGAGATCTGAGGCAGGCGAGGCCCTGAAAGGCCGTGGTCTATAGAAGCAGTTTTCTCTCCCAAGACATCACGC
CCTGTGGTACCCATACACTGATGCTGTCATAGTAGAAACATGGAACCCCCAAATTCTCCAGAAAGAAGAAGAACGGGTGCCACCGCACCCTTTTTACCTTGATTTCTCTATCTGGGAAGTGGGCCCCA
AGGCCTTCAACTGCCTTTAGGGATATCTGTGGGCTAACCAGTTTCTACAAAGCTCTTTGAGGTTCTGGGTGAGAGGCGGTAGAGTCGGCCATCAGTTTGTTGTGGACCCTTATGTTGTCTGGGTATCA
TGTCCTCCCTAGAACTCATGTGGTCTCTTCCTGTAAGCTGCTGTGGGAGAGTTACCAGAAGGGAGGCTCCTTGTGACTTCACTGTGGTGCCTGCTGAGGTCCGAGGGCTCAGTTGCCCACCCATCCAG
GAAAGCCTAACATTCAGGTAGATTCATCTGTTAATAGGTTATGGTCAGGCAGCCTTTGTCTACCTAGTCTGTCACTCACAATGAACAGCATGACTTACAGCTGGTGTGAGCGCTACCATCCCCTCCAT
GGCCCCGAAGCTGCTTTTTTTTTTTTTCTGTTTGCTTTGCTGATTGTGAATACTTCCTTCAGAAGAGGAAAATGCTGGCTGTGCCCTTTTGGGTGTGGAGGTGCCTGGAAACGCTGGGCTGTGAATAG
GCAGATGACGTGGCGTGGGCTTGCAAAGGTTCAGGATGTGTAATGAGTGACACGCTGCCCTGGAGGCAGTCCTGTTAGCATGTGTGTCGGAAATGGCGATTAACCCCGAGAGCCTAATTCTGCCCTTC
CTCCCCCTCCTTCTTCCTTTCATTCAGTAAACATTTAAAAGTGGTGCTGTGTCAGGCACTGTTCCAGGGTCTGGAAAGGACCAAGAGGAAGGGAAAGATCTCGGCTAGAGGTGAGTATGGAGGGAAAG
TCAGTGTAGAGGGACAAGAACGAAGGTGTGTCACAGGTGCCCTGGAGAGCTTTTGGGTCCCACAAGGAAAAGTATAAGAAGGTTCCAGAAAGAAGTAAGGCTCAGGTGGAGTGAGCACAGAAGGTGTC
TGAAGGAAAACAGACCCAAGTAAAGTGGTTTAGACTTGGGTTATCCCTTTCCTGGCACCACAGTGTTTTAGACAGAAGCATGGTCGCAGTGTCCTCTTAATGAGGTCAGTTCAAAACCAGGACAGGGC
CCAGGAAGAAGGGGTGGCTGTCACAGCTGCCTGTGGCTGGCAAAGGCCATGGACCCAGATATCTTTTTGTGTGCTCCATGGGGAGCAGTCTCAAGCAGGCAGCAGGCCCTTTTGAAGATCATGGACCC
CACTGTGAAGATGGTTTTCAGTGCAGTCAACATAGTGATCCTGAGAATCCAGGCCTGTGGATACTTGCAGGGAAGTTGAAGTTCAGTGAACTGGTGAATGAACGCCGTGTTGGAATCCAGGAAAGCTG
GGGAAGAAACAGAGGTAACCTCGGTTAAGCCCAAGGTTTCCCTTAGCCACCCTTCCACTCAAGGAAAAGTGGCTCCTACTTGGTGACGGTACCTTCTTGAGAGACACAAAGATGATTAATTAATGGAA
ATTAACTTTATGAATAATAAATACTCAGTCGGATGAAGTAGCATTTCCATCTGTCAGATCTTCTGCTGTAGCCATTTAACTACAGCTGGAGCGCCAGGAAAACCATCAACAGAAAAAAAAAACCCACA
TCATGTTGCGTTCCGTTTAAAGTTGTATCAAAGGCTCACTAAGCAAGTGGAGGCATGAAAAGCAGCCAAACCCAGAAATGTGGCCTTGAAGCCCTGCCTCACCTGCTGTCCCACATGCAGCTGGTGGC
TCACTCTGAACTCTGCACTGGTCTATTGTCAGTCAAATCCGAACATGTCAAAATGAGTCTTTCCATTTACATTCTACTCACAAGGAAATGATGGGCGTCCTTTTTACTGTGCAAACAGCATGCATGTT
TTCTCGGTACCTCAGTAGCATAGCCTCCGGGTGTAGACAAGCTACAGTCAGTCATGTTTGTTGTAGAGTGACAGACACTGTGGAGTTGGTGTATACTCTGGGGAAGGCTCTCTTCTGCTCCTCAAGGG
GGATCAACACATTATGTCAGACCCTACAGTGGCCTTGAAGCTTCCTTTCAGTCTCCTTGCCTTTCCGCAGTGCGTGTGGAAGAGGCACACGATCTGTAGTTTCATCGTGTGAACGTGAGACAAGGGAA
TTGTGAAGGTTCTTCTCTCTCATCTTGAAAGGTCGTCTCAGTGTTCTGCCTTCCACGCCTGCTGTTTAAGTTCATACTCACCAGTACTAGGTGGTCTCACTGGTTCTGGACAACTGGAAAGATCAGTG
AAATAAAATAGGAAGTATTTTGTAACTGAGTGAAAAAAAAA

hide sequence

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-61320	BioCyc
NCBI Gene	LOC102550786	ENTREZGENE
PhenoGen	LOC102550786	PhenoGen
RNAcentral	URS0000CCE5BA	RNACentral
	URS0000CCF524	RNACentral
	URS0000CCF735	RNACentral
	URS0000CCF949	RNACentral
	URS0000CD060E	RNACentral

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-12-18	LOC102550786	uncharacterized LOC102550786			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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