Rf29 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Rf29 (Renal function QTL 29) Rattus norvegicus

Symbol: Rf29
Name: Renal function QTL 29
RGD ID: 1331792
Previously known as: Specialized Center of Research QTL 31; SCOR31
Trait: urine potassium amount   (VT:0010539)    
Measurement Type: urine potassium level   (CMO:0000128)    
LOD Score: 4.589
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8143,457,837 - 87,558,729RGD_MAPPER_PIPELINE
mRatBN7.2135,239,598 - 78,430,678RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0136,033,165 - 79,689,689RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0136,630,109 - 80,946,315RGDRnor5.0
RGSC_v3.4133,134,446 - 78,134,446RGDRGSC3.4
RGSC_v3.1156,717,951 - 78,212,557RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29Ratkidney disease  IAGP 70849 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29Ratincreased urine potassium level  IAGP 70849 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29Raturine potassium level  IDA 70849 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29Ratcontrolled sodium content diet  IDA 70849 RGD 
Rf29Ratfurosemide  IDA 70849 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29Raturine potassium analysis  IDA 70849 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29RatBN/SsNHsd  IEA 70849 RGD 
Rf29RatSS/JrHsdMcwi  IEA 70849 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Rf29Raturine potassium amount  IDA 70849 RGD 


#
Reference Title
Reference Citation
1. A genomic-systems biology map for cardiovascular function. Stoll M, etal., Science 2001 Nov 23;294(5547):1723-6.

Related QTL Description Reference
Srn4 maps to same region RGD:70849
Rf28 maps to same region RGD:70849
Rf27 maps to same region RGD:70849



1 to 20 of 846 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41179892LOC120093155uncharacterized LOC12009315513527185235375055Rat
1583514LOC681177similar to GTPase activating protein testicular GAP113567520035781741Rat
41270053LOC120099102rho GTPase-activating protein 20-like13584919135873247Rat
6493251Nid2-ps2nidogen 2, pseudogene 213593681635964021Rat
41063986LOC120099104uncharacterized LOC12009910413603618236044823Rat
41037329LOC120099103uncharacterized LOC12009910313609044736107414Rat
41192130Nid2-ps5nidogen 2, pseudogene 513613231736147184Rat
1597161LOC301792clone rb2 rab1a related protein pseudogene13639757136398662Rat
41053334Rab1a-ps1RAB1A, member RAS oncogene family, pseudogene 113664225336643958Rat
41109328Rab1a-ps2RAB1A, member RAS oncogene family, pseudogene 213680037436801331Rat
11394768LOC108349732uncharacterized LOC10834973213735354037360813Rat
40996352Rab1a-ps3RAB1A, member RAS oncogene family, pseudogene 313750936237511163Rat
41356485Rab1a-ps4RAB1A, member RAS oncogene family, pseudogene 413812763038128295Rat
40948223Nid2-ps13nidogen 2, pseudogene 1313841522738440562Rat
41102376LOC120100090uncharacterized LOC12010009013849901038527803Rat
7734973Nid2l2nidogen 2 like 213862589138700200Rat
1586100Rab1-ps1RAB1, member RAS oncogene family, pseudogene 113879930038800803Rat
41258807LOC120100091uncharacterized LOC12010009113901301039029344Rat
7514941Cd99l3CD99 molecule like 313931585739600133Rat
41182833Nid2-ps6nidogen 2, pseudogene 613954880339562954Rat

1 to 20 of 846 rows
1 to 20 of 667 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10279D1Wox1214717759307977593226Ratregion
10280D1Arb3525017759298477593234Ratregion
10281D1Mgh2719517759876677598961Ratregion
10332D1Arb3229317786449677864789Ratregion
10333D1Arb3324617787625477876500Ratregion
10334D1Wox1420617843047178430669Ratregion
10335D1Arb3632717843042478430754Ratregion
10337D1Mgh514217843053678430678Ratregion
11047D2Mit1320915679441956794475Ratregion
11144D1Wox1114716583292965833076Ratregion
11145D1Arb3130216583290165833203Ratregion
33872D1Mit3321516474374564743958Ratregion
33872D1Mit3321516487235364872485Ratregion
33931D1Mit108515683509656835181Ratregion
34433D1Mgh314514580314045803251Ratregion
34465D1Mgh421314896358448963799Ratregion
11326D1Wox1338017550544975505830Ratregion
33660D1Mit914714936146549361612Ratregion
36085D1Rat9518516812322968123414Ratregion
36253D1Rat1713614964823549648371Ratregion
1 to 20 of 667 rows

Flank 1: (D1Mit1)
Rat AssemblyChrPosition (strand)Source
RGSC_v3.1156,717,951 - 56,718,312RGD
RH 3.4 Map1683.1RGD
RH 3.4 Map1683.1UniSTS
RH 2.0 Map1413.3RGD
SHRSP x BN Map132.6799RGD
Peak: (D1Mit10)
Rat AssemblyChrPosition (strand)Source
GRCr8165,508,241 - 65,508,326 (+)Marker Load Pipeline
mRatBN7.2156,835,096 - 56,835,181 (+)MAPPER
Rnor_6.0157,861,385 - 57,861,469NCBI
Rnor_5.0158,788,170 - 58,788,254UniSTS
Celera153,037,542 - 53,037,626UniSTS
RH 3.4 Map1672.9RGD
RH 3.4 Map1672.9UniSTS
RH 2.0 Map1394.8RGD
SHRSP x BN Map126.9RGD
Cytogenetic Map1 RGD
Flank 2: (D1Mgh5)
Rat AssemblyChrPosition (strand)Source
GRCr8187,558,587 - 87,558,729 (+)Marker Load Pipeline
mRatBN7.2178,430,536 - 78,430,678 (+)MAPPER
Rnor_6.0179,689,548 - 79,689,689NCBI
Rnor_5.0180,946,174 - 80,946,315UniSTS
RGSC_v3.4178,134,304 - 78,134,446RGD
RGSC_v3.4178,134,305 - 78,134,446UniSTS
RGSC_v3.1178,212,415 - 78,212,557RGD
Celera172,898,184 - 72,898,325UniSTS
RH 3.4 Map1791.5UniSTS
RH 3.4 Map1791.5RGD
RH 2.0 Map1501.0RGD
SHRSP x BN Map140.2499RGD
FHH x ACI Map140.1RGD
Cytogenetic Map1q21UniSTS


1 to 10 of 70 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat

1 to 10 of 70 rows


Database
Acc Id
Source(s)
NCBI Gene Rf29

Note Type Note Reference
qtl_general additional information, including phenotype and mapping information, can be found at A genomics-systems biology map for cardiovascular function 70849
qtl_general potassium urine concentration measured on low salt diet following Lasix injection (SCOR31) 70849