D1Rat11 Marker Search Result - Rat Genome Database

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Marker: D1Rat11

Symbol: D1Rat11
Previously known as: oxsts6538; R008-B02; R0008-B02; 
RGD ID: 35242
Expected Size: 175 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8142,666,497 - 42,666,672 (+)Marker Load Pipeline
mRatBN7.2140,260,422 - 40,260,599 (+)MAPPERmRatBN7.2
Rnor_6.0140,341,683 - 40,341,857NCBIRnor6.0
Rnor_5.0141,691,700 - 41,691,874UniSTSRnor5.0
RGSC_v3.4134,504,756 - 34,504,931RGDRGSC3.4
RGSC_v3.4134,504,757 - 34,504,931UniSTSRGSC3.4
RGSC_v3.1134,507,701 - 34,507,876RGD
Celera135,958,211 - 35,958,385UniSTS
SHRSP x BN Map118.23UniSTS
SHRSP x BN Map118.23RGD
FHH x ACI Map126.8199RGD
Cytogenetic Map1p11UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Plekhg1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer ACTGAAGGCATTGCTTCTGC
Reverse Primer TCAAAAAACTCCTAACTGCACA
 
Template
CGGNAGTGCAAGCTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCACCAACTCAAAATGATTG
TTCTTTAGCTTTGAAGACATTGCTTCTGTGACTGAAGGCATTGCTTCTGCCACATGTATCATCT
AGTGTAGCCAGTAAATCTGCTCTGAGAGTGACTCTTAAAACGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGAGTATGTGTGTTATGTGCAGTT
AGGAGTTTTTTGAGACTAGGACTTGAACTTATAGTCCAAATTAGCCTTAAACCTATGTCCTCTT
CTGAGATTATAGACATGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGT
GTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCC
TGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGT
CGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGAGAGAGGCGGNTTNCN
TNTTNGGGGCGCCAGGGTGNTTNAAANGNNCACAGTNNGNCGNACAACAGCTGNNTGCCCTTCA
NCGCCNNNCCCNGANAGAGTTTNCAACAAGCNNTACCAAGCTGGGTTTTGNCNCANNNGNGANN
ATCCTGTTATGAATGGTCNGTTCCGAAAATCGGCAANAATCCCTTTATAAANGANNAGNANANC
CGNGNTAGNGGNNGAGTGTNNTCCANTNTGNANCAAGAGNCACTCTTNNNNANCNTNGNNTCCA
ACNNCAGAGGGCGNAANACCNTTTTCAANGCGA

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1583676Plekhg1pleckstrin homology and RhoGEF domain containing G114261202342841727Rat

Nucleotide Sequences
GenBank Nucleotide CH474052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 679812 UniSTS