Prcr2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Prcr2 (Prostate cancer resistance QTL 2) Rattus norvegicus

Symbol: Prcr2
Name: Prostate cancer resistance QTL 2
RGD ID: 1558642
Also known as: Pcr2
Trait: prostate integrity trait   (VT:0010571)    
Measurement Type: area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio   (CMO:0000899)    
LOD Score: 4.3
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2120,763,158 - 44,095,856RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0121,812,623 - 44,409,802RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0123,292,314 - 45,739,646RGDRnor5.0
RGSC_v3.4121,288,064 - 38,490,502RGD_MAPPER_PIPELINERGSC3.4
Cross Type: Not Available
Strains Crossed: ACI/SegHsd F344/Jcl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain
ACI/SegHsd  (IEA)
F344/Jcl  (IEA)

References

References - curated
1. Yamashita S, etal., Cancer Res 2005 Apr 1;65(7):2610-6.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
62024Rps12ribosomal protein S1212168085421683010Rat
2581Esr1estrogen receptor 114110633541499104Rat
619965Adcy2adenylate cyclase 213437563934822237Rat
70494Terttelomerase reverse transcriptase12963721329659509Rat
3757Srd5a1steroid 5 alpha-reductase 113368606933720468Rat
69352Slc6a18solute carrier family 6 member 1812960728829621925Rat
3234Oprm1opioid receptor, mu 114316005743413409Rat
631382Taar4trace amine-associated receptor 412148105021482093Rat
631385Taar7htrace amine-associated receptor 7h12137349321374569Rat
631386Taar8btrace amine-associated receptor 8b12130297821307489Rat
631388Taar7gtrace amine-associated receptor 7g12138736021388436Rat
631391Taar8atrace amine associated receptor 8A12133276321333887Rat
631395Taar7dtrace-amine-associated receptor 7d12140932521410401Rat
620523Tcf21transcription factor 2112270135322704212Rat
621621Taar1trace-amine-associated receptor 112151774221518740Rat
631390Taar8ctrace amine-associated receptor 8c12128984321290877Rat
631392Taar7btrace amine-associated receptor 7b12144083221441908Rat
631387Taar7atrace amine-associated receptor 7a12145093321452009Rat
631394Taar7etrace-amine-associated receptor 7e12140171621402792Rat
628825Enpp1ectonucleotide pyrophosphatase/phosphodiesterase 112069874620763741Rat
631383Taar9trace amine-associated receptor 912127497221275988Rat
621405Hey2hes-related family bHLH transcription factor with YRPW motif 212682213126832218Rat
621647Vipvasoactive intestinal peptide14206487842073219Rat
621557Sdhasuccinate dehydrogenase complex flavoprotein subunit A12893596528960936Rat
621603Hint3histidine triad nucleotide binding protein 312703593627045799Rat
631393Taar7f-pstrace amine-associated receptor 7f, pseudogene12139567621396564Rat
620538Ppp1r14cprotein phosphatase 1, regulatory (inhibitor) subunit 14c13977340339886970Rat
620546Syne1spectrin repeat containing nuclear envelope protein 114151214641983382Rat
631384Taar6trace amine-associated receptor 612145847521459512Rat
727798Trmt11tRNA methyltransferase 11 homolog12705443727109765Rat
621392Ccn2cellular communication network factor 212080219920805315Rat
619856Trdntriadin12395565124410494Rat
3720Slc9a3solute carrier family 9 member A312912463329167912Rat
3715Slc6a3solute carrier family 6 member 312970944329750413Rat
621790Exoc3exocyst complex component 312909129829122056Rat
1306836Rnf217ring finger protein 21712601666826108736Rat
619747Stx7syntaxin 712119707521237320Rat
1307525Kiaa0408LKiaa0408-like12861560028630309Rat
1308544RGD1308544LOC36119213482588734850044Rat
1306375Mrpl36mitochondrial ribosomal protein L3612996548129968896Rat
1307311Mthfd1lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like14044392640632911Rat
1307896Clptm1lCLPTM1-like12966754529683530Rat
1307356Tent4aterminal nucleotidyltransferase 4A13376612133799433Rat
1307359Brd9bromodomain containing 912932997429357285Rat
3668Sgk1serum/glucocorticoid regulated kinase 112298025723098122Rat
1308516Trip13thyroid hormone receptor interactor 1312935709329402078Rat
1310121Tppptubulin polymerization promoting protein12925711129281134Rat
735159Ipcef1interaction protein for cytohesin exchange factors 114323790343451735Rat
1306801Clvs2clavesin 212373527223762997Rat
708362Scaf8SR-related CTD-associated factor 814372768643855889Rat
1310175Slc2a12solute carrier family 2 member 1212280306822862204Rat
1309747Ice1interactor of little elongation complex ELL subunit 113264037232682669Rat
1309546Rmnd1required for meiotic nuclear division 1 homolog14085982940894390Rat
1309729Fastkd3FAST kinase domains 313485834234866988Rat
1311467Myct1myc target 114201813742029410Rat
1359185Taar5trace amine-associated receptor 512146992321470936Rat
1308671Mtrr5-methyltetrahydrofolate-homocysteine methyltransferase reductase13486699134899425Rat
1311459Nkd2NKD inhibitor of WNT signaling pathway 212944289829470839Rat
1305235Armt1acidic residue methyltransferase 114089455840918302Rat
1306482Rnf146ring finger protein 14612845886428475758Rat
1307544Cnksr3Cnksr family member 314349927343591630Rat
1309405Fbxo5F-box protein 514219606842202437Rat
1309309Irx4iroquois homeobox 413003056130039549Rat
1306962Slc18b1solute carrier family 18 member B112162823221670807Rat
1310945Ccdc170coiled-coil domain containing 17014094560741050010Rat
1309288Iydiodotyrosine deiodinase14000399940019323Rat
1307562Hddc2HD domain containing 212629403026313914Rat
1310075Vnn1vanin 112153708421547395Rat
1309834Irx2iroquois homeobox 213066096030666378Rat
1309060Irx1iroquois homeobox 113129461531300444Rat
1307099Eya4EYA transcriptional coactivator and phosphatase 412217227522415978Rat
1306621Zbtb2zinc finger and BTB domain containing 214082745740846733Rat
1310128Med10mediator complex subunit 1013347006433481698Rat
1310033Moxd1monooxygenase, DBH-like 112107512421165348Rat
1305515Rgs17regulator of G-protein signaling 1714222224842324625Rat
1310046Adamts16ADAM metallopeptidase with thrombospondin type 1 motif, 1613243043632562481Rat
1359672Slc12a7solute carrier family 12 member 712947269229554246Rat
1311239Pdcd6programmed cell death 612896651828982188Rat
1311240Taar2trace amine associated receptor 212150029021504259Rat
70988Akap12A-kinase anchoring protein 1214073012340819863Rat
1560234RGD1560234similar to RIKEN cDNA 1200013F2414364087643641971Rat
1564382RGD1564382similar to Sprouty homolog 3 (Spry-3)13515624835159075Rat
1566426Ncoa7nuclear receptor coactivator 712685622827016950Rat
1565215Rpl26-ps2ribosomal protein L26, pseudogene 212891793728918420Rat
1564281Zdhhc11zinc finger, DHHC-type containing 1112929621629327227Rat
1563246Rspo3R-spondin 312828391428368661Rat
1311933RGD1311933similar to RIKEN cDNA 2310057J1812879990228816230Rat
1359258Taar7ctrace amine-associated receptor 7C12142936421430440Rat
1311954Nsun2NOP2/Sun RNA methyltransferase 213366213933685887Rat
1559857Ahrraryl-hydrocarbon receptor repressor12899363429088673Rat
1359654Echdc1ethylmalonyl-CoA decarboxylase 112847635428507173Rat
1560609Vnn3vanin 312157136421583626Rat
1311599Lpcat1lysophosphatidylcholine acyltransferase 112976607029816401Rat
735106Ccdc127coiled-coil domain containing 12712892842028935885Rat
1359566Taar3trace amine-associated receptor 312149153821492566Rat
1583514LOC681177similar to GTPase activating protein testicular GAP113567520035781741Rat
1584748LOC679794similar to Cytochrome c, somatic14039100640392349Rat
1584766LOC679776similar to breast cancer metastasis-suppressor 114039663240399871Rat
1583609LOC679881similar to dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)13323121133233823Rat
1587241LOC501406similar to regulator of sex-limitation candidate 113522232535238553Rat
1562524RGD1562524similar to ribosomal protein L2714254115942541467Rat
1583676Plekhg1pleckstrin homology and RhoGEF domain containing G114034868440434063Rat
1564978Lrrc14bleucine rich repeat containing 14B12892147528925646Rat
1566336Cep72centrosomal protein 7212922531229255294Rat
1566284RGD1566284similar to heterogeneous nuclear ribonucleoprotein A313960157639603128Rat
1566325RGD1566325similar to regulator of sex-limitation candidate 1613497913235014417Rat
1594328Slc6a19solute carrier family 6 member 1912958620529604960Rat
1590840LOC364661similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)13400507334006590Rat
1590841LOC364658similar to ribosomal protein L10a13120294431203499Rat
1586034LOC498996similar to DnaJ (Hsp40) homolog, subfamily A, member 412732226827323406Rat
1586097LOC365090similar to 5-nucleotidase, cytosolic II14269972042701497Rat
1586100Rab1-ps1RAB1, member RAS oncogene family, pseudogene 113879930038800803Rat
1586104LOC365076similar to histone deacetylase 112801008128010909Rat
1586105LOC365074similar to heterogeneous nuclear ribonucleoprotein A312675747026758537Rat
1586106LOC365073similar to SEC24 related gene family, member C12671385926716732Rat
1586108LOC365071similar to zinc finger, BED domain containing 412390376923906388Rat
1589918LOC689660similar to Bcl-2-like 13 protein (Mil1 protein) (Bcl-rambo)12889484128901203Rat
1584802LOC679739NADH dehydrogenase (ubiquinone) Fe-S protein 612996883329977423Rat
1587386LOC292178hypothetical LOC29217812363807123638977Rat
1597456Tbpl1TATA-box binding protein like 112277789222803305Rat
1593465Cenpwcentromere protein W12752532427530464Rat
1593145LOC502226similar to ribosomal protein L13A14288511242885723Rat
1593146LOC502223similar to mitochondrial ribosomal protein L3012106800321068796Rat
1597161LOC301792clone rb2 rab1a related protein pseudogene13639757136398662Rat
1594836LOC689216similar to 60S ribosomal protein L712564945525650368Rat
1594796Tpd52l1TPD52 like 112617203826290704Rat
1594173Zfp748zinc finger protein 74813510273235137107Rat
1595500LOC680123hypothetical protein LOC68012313432412834324855Rat
1595505LOC680118similar to LIM and senescent cell antigen-like domains 114343510143436082Rat
1595515LOC680107similar to adaptor-related protein complex 2, beta 1 subunit13429219034295856Rat
1594397Taar7i-pstrace amine associated receptor 7i, pseudogene12135270821353774Rat
1598121Ube2ql1ubiquitin-conjugating enzyme E2Q family-like 113354881433589174Rat
1598312Mtrf1lmitochondrial translation release factor 1 like14220855342221020Rat
1594231LOC680200similar to zinc finger protein 45513486693434944939Rat
2324148Tiam2TIAM Rac1 associated GEF 214391817944119499Rat
2324149LOC100362709proteasome activator complex subunit 2-like13472220534723042Rat
6493251LOC100911408nidogen-2-like13593681635964021Rat
6494479LOC100911237zinc finger protein 420-like12888439028908726Rat
6495554LOC100910971peptidyl-prolyl cis-trans isomerase D-like13406515534070734Rat
6499508LOC100910237uncharacterized LOC10091023712167994021680668Rat
7514941LOC102552482uncharacterized LOC10255248213931585739600133Rat
7511239LOC102546606uncharacterized LOC10254660614272165642725386Rat
7540144LOC102546520uncharacterized LOC10254652013838878238396368Rat
7650092LOC102553526uncharacterized LOC10255352612093016520935165Rat
7636033LOC102554862ADP-ribosylation factor 1-like12859712228600478Rat
7636934LOC10255402360S ribosomal protein L29-like12150126521502159Rat
7624072LOC102553457uncharacterized LOC10255345712093516520952028Rat
7630011LOC102546677microtubule-associated protein RP/EB family member 1-like14054595940552212Rat
7630698LOC102555830uncharacterized LOC10255583012286840122877359Rat
7544841LOC102555832uncharacterized LOC10255583213967915439685439Rat
7600894LOC102549842zinc finger protein 91-like13507540835091448Rat
7579399LOC102554376uncharacterized LOC10255437612216858822169892Rat
7550261LOC102551815guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1-like13785007237852984Rat
7551033LOC102546790uncharacterized LOC10254679014299602243017130Rat
7583283LOC102546868uncharacterized LOC10254686812353050623533251Rat
7734973LOC102556805rho GTPase-activating protein 20-like13862589138700200Rat
7704848LOC102549743zinc finger protein 93-like13495272434955509Rat
7723368LOC102553925tyrosine-protein kinase Yes-like14336702943372347Rat
7740967Nkain2sodium/potassium transporting ATPase interacting 212466862725877051Rat
7697243LOC102551340zinc finger protein 728-like13516573235183894Rat
7718701LOC102547287zinc finger protein 728-like13505253535064003Rat
7746808LOC102555956zinc finger protein 120-like12886591728875433Rat
7678966LOC102555465uncharacterized LOC10255546512257657822594738Rat
7681875LOC102553527uncharacterized LOC10255352713109632531105986Rat
9078384LOC103690946activated RNA polymerase II transcriptional coactivator p15 pseudogene12963011729632569Rat
9220759LOC10369097560S ribosomal protein L30-like14248714542487730Rat
9308929LOC103690944uncharacterized LOC10369094412597207826002017Rat
9225009LOC103690976ubiquitin-conjugating enzyme E2 N-like14274362642748575Rat
9270734LOC103690958uncharacterized LOC10369095814085412740859896Rat
9257174LOC103690942solute carrier family 2, facilitated glucose transporter member 3 pseudogene12379865323799648Rat
9302186LOC103690933uncharacterized LOC10369093312170462321734218Rat
9343707LOC103690943uncharacterized LOC10369094312448027524481011Rat
9344246LOC10369095160S ribosomal protein L34 pseudogene13500559135008025Rat
11364129LOC10834973040S ribosomal protein S20 pseudogene13275477832761865Rat
11455515LOC108348755uncharacterized LOC10834875513351530533523055Rat
11446120LOC108349507uncharacterized LOC10834950712907865029084116Rat
11464132LOC10834944240S ribosomal protein S15a pseudogene13364139933642354Rat
11465027LOC108349506protein LEG1 homolog12857121028583888Rat
11437209LOC10834945460S ribosomal protein L36a-like12111964521120113Rat
11437431LOC108349187uncharacterized LOC10834918712123747721243704Rat
11365258LOC108349443uncharacterized LOC10834944312185917221870434Rat
11451513LOC108349392uncharacterized LOC10834939213328716733302936Rat
11368884LOC108349236uncharacterized LOC10834923612310406023112500Rat
11429793LOC108349511uncharacterized LOC10834951113496182534967714Rat
11452897LOC10834983140S ribosomal protein S29 pseudogene12126179721262125Rat
11394768LOC108349732uncharacterized LOC10834973213735354037360813Rat
11414134LOC108348899uncharacterized LOC10834889912348657323493321Rat
11415566Trnae-cuc1transfer RNA glutamic acid (anticodon CUC) 112684641326846484Rat
11375087LOC108349508uncharacterized LOC10834950813217249432206222Rat
11398775LOC10834850860S ribosomal protein L7a pseudogene12765349227655379Rat
11387570LOC108349468uncharacterized LOC10834946812325955723395640Rat
11520738LOC10834951760S ribosomal protein L7a pseudogene14029604740296903Rat
11479453Soga3SOGA family member 312862903628701416Rat
11508573LOC10834872660S ribosomal protein L21 pseudogene12347687823477482Rat
11496872LOC10834907140S ribosomal protein S27-like12533649425337281Rat
11512463LOC108349469uncharacterized LOC10834946912330225523315783Rat
41137230LOC120099105uncharacterized LOC12009910513610834336115467Rat
41235294NEWGENE_40934091transfer RNA alanine (anticodon AGC)12458968624589766Rat
41356485LOC120100085ras-related protein Rab-1A-like13812763038128295Rat
41087395LOC120099100uncharacterized LOC12009910013518412235188477Rat
41324741LOC120099108uncharacterized LOC12009910814114428641198117Rat
41206076LOC120100183U6 spliceosomal RNA14182242541822528Rat
41090434LOC120097703geranylgeranyl transferase type-2 subunit beta-like13374848833751375Rat
41091493LOC120100435small nucleolar RNA SNORA1713311115333111279Rat
41115603LOC120098885uncharacterized LOC12009888512276637922777891Rat
41092135LOC120098969eukaryotic translation initiation factor 1-like12894424028944805Rat
41092469LOC120100446small nucleolar RNA SNORA1712874163928741754Rat
41116364LOC120100089uncharacterized LOC12010008913933371439367466Rat
41327994LOC120097700uncharacterized LOC12009770012778739427789150Rat
41094137LOC120100092uncharacterized LOC12010009213944664439458137Rat
41260918LOC120098884uncharacterized LOC12009888412275015822766306Rat
41261521LOC120100131U6 spliceosomal RNA12313135023131456Rat
41095055LOC120097701uncharacterized LOC12009770113015796330160240Rat
41120638LOC120100362small nucleolar RNA SNORA2413371671333716842Rat
41176576LOC120100395small nucleolar RNA U2-1914221196842212047Rat
41187490LOC120097704c-Myc-binding protein-like13403274734033058Rat
41342237NEWGENE_40926764transfer RNA proline (anticodon AGG)13455371434553795Rat
41123377LOC120100087uncharacterized LOC12010008713961516839639974Rat
41179892LOC120093155uncharacterized LOC12009315513527185235375055Rat
41191148LOC120097696uncharacterized LOC12009769613880800538876306Rat
41192130LOC120099101nidogen-2-like13613231736147184Rat
41343609LOC120097694igE-binding protein-like13413543734150006Rat
41343633LOC120100475U2 spliceosomal RNA14310999143110055Rat
41367908LOC120100097uncharacterized LOC12010009714180708741809467Rat
41124938LOC120100484small nucleolar RNA U1312340034023400445Rat
41267122LOC120098984uncharacterized LOC12009898412984137229901226Rat
41102376LOC120100090uncharacterized LOC12010009013849901038527803Rat
41182833LOC120100086nidogen-2-like13954880339562954Rat
41270053LOC120099102rho GTPase-activating protein 20-like13584919135873247Rat
41127918LOC120097709uncharacterized LOC12009770914370756243712250Rat
41130940LOC120099109uncharacterized LOC12009910914352558343527559Rat
41230696LOC120100476small nucleolar RNA SNORD10012168226921682343Rat
41274044LOC120100449small nucleolar RNA SNORA1712761898427619106Rat
41352398LOC120097708uncharacterized LOC12009770814311178143117463Rat
41376744LOC120100178U1 spliceosomal RNA14058664340586804Rat
41109328LOC120097706ras-related protein Rab-1A-like13680037436801331Rat
41201839LOC120098986uncharacterized LOC12009898612990898529924691Rat
40947244LOC120099110uncharacterized LOC12009911014391255943915882Rat
41011483LOC120097411igE-binding protein-like12160060821621842Rat
40948223LOC120097695nidogen-2-like13841522738440562Rat
40955162LOC120098992uncharacterized LOC12009899213117776731197773Rat
40978443LOC120100095uncharacterized LOC12010009513961491439670599Rat
40999580LOC120100096uncharacterized LOC12010009613847592038485517Rat
40933802LOC120098871uncharacterized LOC12009887112234033222351065Rat
40985057LOC120100215U7 small nuclear RNA13494816234948226Rat
40938093LOC120097697nidogen-2-like13927484839317809Rat
40962765LOC120100144U6 spliceosomal RNA13480425834804364Rat
40938986LOC120100163U6 spliceosomal RNA12519679325196899Rat
40964934LOC120100455small nucleolar RNA SNORA1712526492725265029Rat
40941038LOC120100497U4 spliceosomal RNA12544589825446060Rat
40967854LOC120100474small nucleolar RNA SNORD8814129686941296962Rat
40996352LOC120099106ras-related protein Rab-1A-like13750936237511163Rat
41244766LOC120100393small nucleolar RNA SNORA3312168260321682729Rat
41077590LOC120098893uncharacterized LOC12009889312313267323172438Rat
41050934LOC120098989uncharacterized LOC12009898912998124829993418Rat
41051800LOC120100093uncharacterized LOC12010009313904619339056506Rat
41247671LOC120100180U6 spliceosomal RNA14369158143691678Rat
41332180NEWGENE_41052310transfer RNA valine (anticodon CAC)12512645025126530Rat
41030689LOC120100112U4 spliceosomal RNA12774229627742439Rat
41053266LOC120100094uncharacterized LOC12010009413789243737948050Rat
41053334LOC120097705ras-related protein Rab-1A-like13664225336643958Rat
41053469LOC120097702uncharacterized LOC12009770213260885332613035Rat
41057629LOC120098995uncharacterized LOC12009899513139434731396128Rat
41220638LOC120100379small nucleolar RNA SNORA2112936727429367411Rat
41258807LOC120100091uncharacterized LOC12010009113901301039029344Rat
41222494LOC120100088uncharacterized LOC12010008813773126837738194Rat
41222953LOC12009909860S ribosomal protein L21-like13508614635087759Rat
41224548LOC120097693heterogeneous nuclear ribonucleoprotein A1-like12838267628386857Rat
41337719LOC120099107uncharacterized LOC12009910714020591640280051Rat
41037329LOC120099103uncharacterized LOC12009910313609044736107414Rat
41063986LOC120099104uncharacterized LOC12009910413603618236044823Rat
41064447LOC120099099uncharacterized LOC12009909913498934035015200Rat
41016349LOC120097707uncharacterized LOC12009770714215732742158793Rat
41042088LOC120099033uncharacterized LOC12009903313324656133288412Rat
41307068LOC120100394small nucleolar RNA U2-3014221219042212259Rat
41042371LOC120100344small nucleolar RNA SNORD10112168155721681630Rat
41021941LOC120098932uncharacterized LOC12009893212608422526091345Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34662D1Mgh215012234064722340797Ratregion
37598D1Rat17618913273727332737458Ratregion
35242D1Rat1118014026042240260599Ratregion
37974D1Rat21124313105084031051081Ratregion
36550D1Rat1215713349198733492143Ratregion
36590D1Rat16015512845987428460027Ratregion
36626D1Rat1516714343287343433040Ratregion
36640D1Rat1416613235591032356093Ratregion
36651D1Rat1615114223682142236969Ratregion
34973D1Rat1315814079518940795347Ratregion
35685D1Rat1012812469741724697545Ratregion
35853D1Rat912912952149329521616Ratregion
35885D1Rat814212887978028879880Ratregion
38028D1Rat12110312076315820763261Ratregion
38134D15Rat4521814409563844095856Ratregion
40368D1Rat25314714348641943486572Ratregion
40704D1Rat25220512339999023400201Ratregion
38568D1Rat23824613373786933738115Ratregion
38782D1Rat13619514328473143284926Ratregion
40086D1Rat25114312742866727428818Ratregion
39086D1Rat23913413178872531788853Ratregion
42077D1Arb332612234059822340924Ratregion
42264D1Rat46311012220216622202271Ratregion
42265D1Arb518313332442333324606Ratregion
42452D1Rat39420612812535928125552Ratregion
42453D1Rat47822112491183924912057Ratregion
42454D1Rat39321112817879628178996Ratregion
42455D1Rat39721114079516340795374Ratregion
42456D1Rat33017213297229132972379Ratregion
42456D1Rat33017213297220532972816Ratregion
42456D1Rat33017213297220532972379Ratregion
42459D1Rat40021914079512940795348Ratregion
42460D1Rat40221514215750442157730Ratregion
40826D1Rat25421214274504142745251Ratregion
41656D1Rat37716512974323529743400Ratregion
43198D1Got2920212232122222321426Ratregion
43200D1Got2714912298244022982586Ratregion
43201D1Got3114612284279422842940Ratregion
43204D1Got3430012833116228331462Ratregion
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60238D1Got27320212970402129704223Ratregion
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60244D1Got3618713001973330019920Ratregion
60245D1Got3818512909814429098329Ratregion
60246D1Got3916714212506642125233Ratregion
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60249D1Got4213914368105343681192Ratregion
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60252D1Got4512314220475642204879Ratregion
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2315138D1Mco12224813294179832942046Ratregion
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2315154D1Mco12117313294091832941091Ratregion
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7191234Ap2b133113429260534292936Ratregion
5035813PMC197251P116413785209837852262Ratregion
5035865PMC262378P113913066445730664596Ratregion
5038614Vnn111612154381021543926Ratregion
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5038764RH12731918013429054034290720Ratregion
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5036181D13Jpk210713110930031109409Ratregion
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7206230Ctgf55712080271020803267Ratregion
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5027159DLAT98413323299833233092Ratregion
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5077614RH13985721614158777441587990Ratregion
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5066630AU04824317512678897826789153Ratregion
5066748AU04817411913110933631109386Ratregion
5066942AU04805917112640398026404153Ratregion
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5067236AU04787828313090905230909335Ratregion
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5068162AU04731123113039481330395044Ratregion
5068228AU04727216414010558540105749Ratregion
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5069983RH9440017312970803729708210Ratregion
5069606AU04638619012117504921175233Ratregion
5069634AU04637029014065621440656504Ratregion
5069062AU04674810413092773930927838Ratregion
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5064894BE10869016814395844143958609Ratregion
5066576AU04827519613780311337803303Ratregion
5084210AA8494139412406840324068497Ratregion
5087540PMC304098P210112972440229724503Ratregion
5088919AU04884822712124385421244081Ratregion
5089081AU04894313212944930029449432Ratregion
5089897AU04942821713991628239916499Ratregion
5088207AU04843114114353065343530794Ratregion
5090765AU04995026413401460034014863Ratregion
5088595AU04866316413332447033324634Ratregion
5082301BE11914215312848067228480825Ratregion
5085407BE10071717512847689928477074Ratregion
5088271AU04846818813977878339778971Ratregion
5088289AU0484819912701003827010135Ratregion
5088565AU04864512012603208626032206Ratregion
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5090205AU04961314112681359426813735Ratregion
5088939AU04885914813821324138213410Ratregion
5088939AU04885914813810618338106354Ratregion
5080896RH14184519214380596343806155Ratregion
5082795BF39012216514323796643238131Ratregion
5084772AI17200614312395586223956005Ratregion
5503762UniSTS:47054048714343543943435926Ratregion
5504532PMC27918P136412965735329657717Ratregion
5504290D5S1607E10213469306634694119Ratregion
5505140Irx28113066257530663265Ratregion
5505089Taar481312148110421481917Ratregion
5505087Taar182612151780821518634Ratregion
5505091Taar990112127503021275931Ratregion
5505093Taar580712147005421470861Ratregion
5505095Taar278512150047221501257Ratregion
5505097Taar389012149165521492545Ratregion
5506147Irx36513066439730664462Ratregion
5506737G4497112413326155633261680Ratregion
5506973fc42c01.y159912821631328216912Ratregion
5507009fj17g12.x1012811276628113629Ratregion
5500013UniSTS:23613726412732357627323841Ratregion
5500037UniSTS:23631932512324212223242447Ratregion
5502275RH12424210412363871923638823Ratregion
5502803POLS108713378763433788721Ratregion
5502845Ap2b133413429260534292939Ratregion
5502845Ap2b133413429260534292939Ratregion
5500707RH7132217113472282534722996Ratregion
5504163UniSTS:25940757613429268234293258Ratregion
5502112MARC_4677-4678:996679594:17313472260734722680Ratregion
Position Markers

Flank 1: (D1Rat121)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2120,763,158 - 20,763,261 (+)MAPPER
Rnor_6.0121,812,623 - 21,812,725NCBI
Rnor_5.0123,292,314 - 23,292,416UniSTS
RGSC_v3.4121,288,065 - 21,288,167UniSTS
RGSC_v3.4121,288,064 - 21,288,167RGD
RGSC_v3.1121,289,420 - 21,289,522RGD
Celera119,515,170 - 19,515,272UniSTS
RH 3.4 Map1199.7RGD
RH 3.4 Map1199.7UniSTS
RH 2.0 Map1126.8RGD
FHH x ACI Map118.0099RGD
Peak: (D1Rat211)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2131,050,840 - 31,051,081 (+)MAPPER
Rnor_6.0133,667,777 - 33,668,017NCBI
Rnor_5.0135,077,728 - 35,077,968UniSTS
RGSC_v3.4171,147,796 - 1,148,037RGD
RGSC_v3.4171,147,797 - 1,148,037UniSTS
RGSC_v3.1171,147,796 - 1,148,037RGD
Celera129,685,067 - 29,685,307UniSTS
FHH x ACI Map125.71RGD
FHH x ACI Map125.71UniSTS
Flank 2: (D15Rat45)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2144,095,638 - 44,095,856 (+)MAPPER
Rnor_6.0144,409,585 - 44,409,802NCBI
Rnor_5.0145,739,429 - 45,739,646UniSTS
RGSC_v3.4138,490,284 - 38,490,502RGD
RGSC_v3.4138,490,285 - 38,490,502UniSTS
RGSC_v3.1138,493,229 - 38,493,447RGD
Celera139,730,228 - 39,730,445UniSTS
FHH x ACI Map1519.6699UniSTS
FHH x ACI Map1519.6699RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
731169Bp153Blood pressure QTL 1530.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13105084033492143Rat
2316649Bp344Blood pressure QTL 344arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13224973533038814Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_statistics_details linkage analysis used only rats without bilateral testicular tumors 1358944
qtl_statistics_details MAPMAKER/EXP(version 3.0b) and MAPMAKER/QTL (version 1.1b) were used for linkage analysis and maps 1358944