Tbpl1 (TATA-box binding protein like 1) - Rat Genome Database

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Gene: Tbpl1 (TATA-box binding protein like 1) Rattus norvegicus
Analyze
Symbol: Tbpl1
Name: TATA-box binding protein like 1
RGD ID: 1597456
Description: Predicted to enable RNA polymerase II core promoter sequence-specific DNA binding activity and RNA polymerase II general transcription initiation factor activity. Predicted to be involved in DNA-templated transcription initiation. Predicted to act upstream of or within acrosome assembly; dTTP biosynthetic process; and spermatid nucleus differentiation. Predicted to be located in cytoplasm and male germ cell nucleus. Predicted to be part of transcription factor TFIIA complex. Orthologous to human TBPL1 (TATA-box binding protein like 1); PARTICIPATES IN Huntington's disease pathway; INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC292173; LOC689030; similar to TATA box-binding protein-like protein 1 (TBP-like protein 1) (TATA box-binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein); TATA box binding protein-like 1; TATA box-binding protein-like 1; TATA box-binding protein-like protein 1; TBP-like 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2122,777,892 - 22,803,305 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,778,459 - 22,803,122 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl122,778,492 - 22,803,302 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,557,426 - 22,582,254 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0128,557,211 - 28,582,034 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0122,754,476 - 22,779,301 (+)NCBIRnor_WKY
Rnor_6.0123,977,154 - 24,002,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl123,977,688 - 24,002,506 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0125,441,466 - 25,466,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,295,515 - 23,320,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1123,298,484 - 23,322,895 (+)NCBI
Celera121,506,025 - 21,530,791 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:11861477   PMID:12947022   PMID:15767669   PMID:15927180   PMID:16765935   PMID:18418073   PMID:23374846   PMID:25943107  


Genomics

Comparative Map Data
Tbpl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2122,777,892 - 22,803,305 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,778,459 - 22,803,122 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl122,778,492 - 22,803,302 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx122,557,426 - 22,582,254 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0128,557,211 - 28,582,034 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0122,754,476 - 22,779,301 (+)NCBIRnor_WKY
Rnor_6.0123,977,154 - 24,002,512 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl123,977,688 - 24,002,506 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0125,441,466 - 25,466,751 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4123,295,515 - 23,320,298 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1123,298,484 - 23,322,895 (+)NCBI
Celera121,506,025 - 21,530,791 (+)NCBICelera
Cytogenetic Map1p12NCBI
TBPL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386133,952,174 - 133,990,432 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6133,952,170 - 133,990,432 (+)EnsemblGRCh38hg38GRCh38
GRCh376134,273,312 - 134,311,570 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366134,315,994 - 134,350,322 (+)NCBINCBI36Build 36hg18NCBI36
Build 346134,315,993 - 134,350,322NCBI
Celera6135,015,381 - 135,049,709 (+)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6131,841,901 - 131,877,571 (+)NCBIHuRef
CHM1_16134,535,432 - 134,570,879 (+)NCBICHM1_1
T2T-CHM13v2.06135,140,198 - 135,178,439 (+)NCBIT2T-CHM13v2.0
Tbpl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391022,579,776 - 22,607,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1022,579,778 - 22,607,837 (-)EnsemblGRCm39 Ensembl
GRCm381022,703,877 - 22,732,666 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1022,703,879 - 22,731,938 (-)EnsemblGRCm38mm10GRCm38
MGSCv371022,423,683 - 22,451,253 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361022,393,295 - 22,420,794 (-)NCBIMGSCv36mm8
Celera1023,650,605 - 23,678,195 (-)NCBICelera
Cytogenetic Map10A3NCBI
Tbpl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554392,539,486 - 2,563,720 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554392,539,465 - 2,548,351 (-)NCBIChiLan1.0ChiLan1.0
TBPL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16135,817,603 - 135,852,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6135,817,613 - 135,852,876 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06131,719,606 - 131,754,960 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TBPL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1126,898,344 - 26,938,452 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl126,899,859 - 26,936,995 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha127,781,262 - 27,818,400 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0127,056,795 - 27,097,278 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl127,058,291 - 27,096,959 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1126,942,064 - 26,979,193 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0126,822,118 - 26,859,272 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0127,131,596 - 27,168,730 (+)NCBIUU_Cfam_GSD_1.0
Tbpl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946122,018,007 - 122,050,977 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365601,797,333 - 1,830,188 (+)EnsemblSpeTri2.0
SpeTri2.0NW_0049365601,797,791 - 1,830,199 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TBPL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl129,899,850 - 29,936,680 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1129,899,956 - 29,936,773 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2133,403,547 - 33,440,366 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TBPL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11339,487,007 - 39,523,752 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1339,483,880 - 39,522,115 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604011,670,816 - 11,708,059 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tbpl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624942819,106 - 847,929 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624942819,099 - 848,240 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tbpl1
164 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:79
Count of miRNA genes:56
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000014805
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat

Markers in Region
BF401688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2122,798,098 - 22,798,291 (+)MAPPERmRatBN7.2
Rnor_6.0123,997,307 - 23,997,499NCBIRnor6.0
Rnor_5.0125,461,537 - 25,461,729UniSTSRnor5.0
RGSC_v3.4123,315,093 - 23,315,285UniSTSRGSC3.4
Celera121,525,638 - 21,525,830UniSTS
RH 3.4 Map1235.2UniSTS
Cytogenetic Map1p12UniSTS
RH144371  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2122,803,396 - 22,803,656 (+)MAPPERmRatBN7.2
Rnor_6.0124,002,604 - 24,002,863NCBIRnor6.0
Rnor_5.0125,466,834 - 25,467,093UniSTSRnor5.0
RGSC_v3.4123,320,390 - 23,320,649UniSTSRGSC3.4
Celera121,530,883 - 21,531,142UniSTS
RH 3.4 Map1231.8UniSTS
Cytogenetic Map1p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 56 40 19 40 8 10 74 35 41 11 8
Low 1 1 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AW434020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF414163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF109177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000014805   ⟹   ENSRNOP00000014805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl122,778,492 - 22,803,302 (+)Ensembl
Rnor_6.0 Ensembl123,977,688 - 24,002,506 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000115485   ⟹   ENSRNOP00000094712
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl122,778,508 - 22,803,060 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116875   ⟹   ENSRNOP00000084884
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl122,778,459 - 22,803,122 (+)Ensembl
RefSeq Acc Id: NM_001127201   ⟹   NP_001120673
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,778,481 - 22,803,305 (+)NCBI
Rnor_6.0123,977,688 - 24,002,512 (+)NCBI
Rnor_5.0125,441,466 - 25,466,751 (+)NCBI
RGSC_v3.4123,295,515 - 23,320,298 (+)RGD
Celera121,506,025 - 21,530,791 (+)RGD
Sequence:
RefSeq Acc Id: XM_006227721   ⟹   XP_006227783
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,778,346 - 22,803,305 (+)NCBI
Rnor_6.0123,977,655 - 24,002,512 (+)NCBI
Rnor_5.0125,441,466 - 25,466,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227722   ⟹   XP_006227784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,777,894 - 22,803,305 (+)NCBI
Rnor_6.0123,977,154 - 24,002,512 (+)NCBI
Rnor_5.0125,441,466 - 25,466,751 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017589742   ⟹   XP_017445231
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,791,340 - 22,803,305 (+)NCBI
Rnor_6.0123,990,549 - 24,002,512 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091288   ⟹   XP_038947216
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,778,325 - 22,803,305 (+)NCBI
RefSeq Acc Id: XM_039091290   ⟹   XP_038947218
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,777,892 - 22,803,305 (+)NCBI
RefSeq Acc Id: XM_039091312   ⟹   XP_038947240
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,778,350 - 22,803,305 (+)NCBI
RefSeq Acc Id: XM_039091315   ⟹   XP_038947243
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,780,321 - 22,803,305 (+)NCBI
RefSeq Acc Id: XM_039091317   ⟹   XP_038947245
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2122,777,892 - 22,803,305 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001120673   ⟸   NM_001127201
- UniProtKB: D4A898 (UniProtKB/TrEMBL),   A0A8I6A122 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227784   ⟸   XM_006227722
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006227783   ⟸   XM_006227721
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017445231   ⟸   XM_017589742
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000014805   ⟸   ENSRNOT00000014805
RefSeq Acc Id: XP_038947218   ⟸   XM_039091290
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947245   ⟸   XM_039091317
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038947216   ⟸   XM_039091288
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947240   ⟸   XM_039091312
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947243   ⟸   XM_039091315
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A122 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094712   ⟸   ENSRNOT00000115485
RefSeq Acc Id: ENSRNOP00000084884   ⟸   ENSRNOT00000116875

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A898-F1-model_v2 AlphaFold D4A898 1-186 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689536
Promoter ID:EPDNEW_R60
Type:initiation region
Name:Tbpl1_1
Description:TATA-box binding protein like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0123,977,694 - 23,977,754EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1597456 AgrOrtholog
BioCyc Gene G2FUF-62040 BioCyc
Ensembl Genes ENSRNOG00000011114 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000066988 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000014805.5 UniProtKB/TrEMBL
  ENSRNOP00000084884 ENTREZGENE
  ENSRNOP00000084884.1 UniProtKB/TrEMBL
  ENSRNOP00000094712.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014805.8 UniProtKB/TrEMBL
  ENSRNOT00000115485.1 UniProtKB/TrEMBL
  ENSRNOT00000116875 ENTREZGENE
  ENSRNOT00000116875.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.310.10 UniProtKB/TrEMBL
InterPro TBP UniProtKB/TrEMBL
  TBP-like UniProtKB/TrEMBL
  TBP_dom_sf UniProtKB/TrEMBL
KEGG Report rno:689030 UniProtKB/TrEMBL
NCBI Gene 689030 ENTREZGENE
PANTHER TBP UniProtKB/TrEMBL
Pfam TBP UniProtKB/TrEMBL
PhenoGen Tbpl1 PhenoGen
PRINTS TIFACTORIID UniProtKB/TrEMBL
UniProt A0A8I6A122 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AM51_RAT UniProtKB/TrEMBL
  D4A898 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Tbpl1  TATA-box binding protein like 1  Tbpl1  TBP-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-03-07 Tbpl1  TBP-like 1  Tbpl1  TATA box binding protein-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-06 Tbpl1  TATA box binding protein-like 1  Tbpl1_predicted  TATA box binding protein-like 1 (predicted)  Data Merged 737654 APPROVED
2008-03-06 Tbpl1  TATA box binding protein-like 1  LOC689030  similar to TATA box-binding protein-like protein 1 (TBP-like protein 1) (TATA box-binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC689030  similar to TATA box-binding protein-like protein 1 (TBP-like protein 1) (TATA box-binding protein-related factor 2) (TBP-related factor 2) (21-kDa TBP-like protein)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Tbpl1_predicted  TATA box binding protein-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED