Wtap (WT1 associated protein) - Rat Genome Database

Name: Wtap
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Wtap (WT1 associated protein) Rattus norvegicus

Analyze

Symbol:

Wtap

Name:

WT1 associated protein

RGD ID:

1563824

Description:

Predicted to enable identical protein binding activity. Predicted to be involved in mRNA methylation and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasm; nuclear membrane; and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nucleus. Orthologous to human WTAP (WT1 associated protein); INTERACTS WITH bisphenol A; cadmium dichloride; gentamycin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC499020; pre-mRNA-splicing regulator WTAP; RGD1563824; similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog); similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog); Wilms tumor 1 associated protein; Wilms' tumour 1-associating protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WTAP (WT1 associated protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Wtap (WT1 associating protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wtap (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WTAP (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WTAP (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wtap (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WTAP (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WTAP (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wtap (WT1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NLRP3 (NLR family pyrin domain containing 3)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	WTAP (WT1 associated protein)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Mus musculus (house mouse):	Wtap (WT1 associating protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	wtap (WT1 associated protein)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	fl(2)d	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wtap	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	50,070,973 - 50,096,074 (+)	NCBI		GRCr8
mRatBN7.2	1	47,665,965 - 47,691,067 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	47,665,965 - 47,691,065 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	48,214,813 - 48,239,914 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	54,202,806 - 54,227,929 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	48,290,329 - 48,315,430 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	47,942,500 - 47,967,633 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	47,942,500 - 47,967,631 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	41,891,437 - 41,917,254 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	43,351,111 - 43,376,211 (+)	NCBI		Celera
Cytogenetic Map	1	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

5-fluorouracil (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

antirheumatic drug (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (EXP,ISO)

casticin (ISO)

CGP 52608 (ISO)

clobetasol (ISO)

cobalt atom (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

disodium selenite (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

ketamine (EXP)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

miconazole (ISO)

mitomycin C (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-acetyl-L-cysteine (ISO)

nickel sulfate (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

PhIP (ISO)

pirinixic acid (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

theophylline (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (IEA)

obsolete mRNA methylation (IBA,ISO)

regulation of alternative mRNA splicing, via spliceosome (IBA,ISO)

RNA splicing (IEA)

Cellular Component

cytoplasm (ISO)

nuclear membrane (ISO)

nuclear speck (ISO)

nucleoplasm (ISO)

nucleus (IBA,ISO)

RNA N6-methyladenosine methyltransferase complex (ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10942595	PMID:11001926	PMID:14681305	PMID:15326124	PMID:24100041	PMID:24316715	PMID:24407421	PMID:24981863	PMID:26458103	PMID:29348140	PMID:29506078
PMID:29507755	PMID:29547716	PMID:36894806

Genomics

Comparative Map Data

Wtap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	50,070,973 - 50,096,074 (+)	NCBI		GRCr8
mRatBN7.2	1	47,665,965 - 47,691,067 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	47,665,965 - 47,691,065 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	48,214,813 - 48,239,914 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	54,202,806 - 54,227,929 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	48,290,329 - 48,315,430 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	47,942,500 - 47,967,633 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	47,942,500 - 47,967,631 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	41,891,437 - 41,917,254 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	43,351,111 - 43,376,211 (+)	NCBI		Celera
Cytogenetic Map	1	q11	NCBI

WTAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	159,726,693 - 159,756,319 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	159,725,585 - 159,756,319 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	160,148,149 - 160,177,351 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	160,068,142 - 160,097,341 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	160,794,229 - 160,823,430 (+)	NCBI		Celera
Cytogenetic Map	6	q25.3	NCBI
HuRef	6	157,617,339 - 157,646,781 (+)	NCBI		HuRef
CHM1_1	6	160,410,378 - 160,439,680 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	160,967,457 - 161,001,943 (+)	NCBI		T2T-CHM13v2.0

Wtap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	13,185,686 - 13,211,430 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	13,185,683 - 13,213,056 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	12,966,799 - 12,992,543 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	12,966,796 - 12,994,169 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	13,159,665 - 13,185,405 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	12,815,617 - 12,835,478 (-)	NCBI		MGSCv36	mm8
Celera	17	12,998,333 - 13,025,542 (-)	NCBI		Celera
Cytogenetic Map	17	A1	NCBI
cM Map	17	8.73	NCBI

Wtap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	21,146,206 - 21,182,486 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	21,149,970 - 21,174,479 (-)	NCBI	ChiLan1.0	ChiLan1.0

WTAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	179,824,106 - 179,854,540 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	177,729,160 - 177,759,590 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	157,609,779 - 157,639,122 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	162,620,947 - 162,650,683 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	162,621,842 - 162,650,683 (+)	Ensembl	panpan1.1		panPan2

WTAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	48,976,523 - 49,004,536 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	48,976,499 - 49,003,961 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	49,818,344 - 49,846,503 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	49,160,699 - 49,189,019 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	49,160,693 - 49,189,019 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	49,043,176 - 49,071,381 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	48,914,192 - 48,942,472 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	49,529,308 - 49,557,423 (+)	NCBI		UU_Cfam_GSD_1.0
UU_Cfam_GSD_1.0	1	49,480,343 - 49,508,532 (+)	NCBI		UU_Cfam_GSD_1.0

Wtap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	143,966,743 - 143,997,439 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	11,227,156 - 11,249,818 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	11,222,513 - 11,249,432 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WTAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	7,622,547 - 7,651,961 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	7,622,544 - 7,651,732 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	9,419,861 - 9,447,657 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WTAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	87,328,228 - 87,357,868 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	59,727,150 - 59,756,923 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wtap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624855	3,205,543 - 3,235,979 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624855	3,205,543 - 3,236,134 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Wtap
82 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	139
Count of miRNA genes:	115
Interacting mature miRNAs:	121
Transcripts:	ENSRNOT00000025936
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	4393289	49393289	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	9856001	54856001	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	10992065	55992065	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	11835181	56835181	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	15431621	49361612	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	0.00000072	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	15431621	49361612	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	16206210	49268520	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	19333571	56983283	Rat
724520	Bp145	Blood pressure QTL 145	2.1	0.0024	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	20784828	65784828	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	22340647	49361612	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	22340647	49361612	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	30882023	123479925	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32356093	162846471	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	32737273	90665040	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	32737458	199368955	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	33449848	78449848	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	33449848	78449848	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	34836858	79836858	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	34836858	79836858	Rat
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	35239598	78430678	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	35239598	78430678	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43284731	118944897	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43284731	118944897	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43284731	118944897	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43284731	118944897	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	43284731	118944897	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43284731	118944897	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	43333002	88333002	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	45803140	78430678	Rat

Markers in Region

RH142762

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	47,686,302 - 47,686,588 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	47,962,869 - 47,963,154	NCBI	Rnor6.0
Rnor_5.0	1	51,786,180 - 51,786,465	UniSTS	Rnor5.0
RGSC_v3.4	1	41,912,490 - 41,912,775	UniSTS	RGSC3.4
Celera	1	43,371,446 - 43,371,731	UniSTS
RH 3.4 Map	1	565.8	UniSTS
Cytogenetic Map	1	q11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	10	74	35	41	11	8
Low								1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001113542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001113543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001113544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086893	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270739	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA900399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ202659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB613741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB613959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK478322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO561762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV108433	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CX570823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV714133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212824	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000025936 ⟹ ENSRNOP00000025936

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	47,665,965 - 47,691,065 (+)	Ensembl
Rnor_6.0 Ensembl	1	47,942,500 - 47,967,631 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000079312 ⟹ ENSRNOP00000072376

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	47,666,248 - 47,683,840 (+)	Ensembl
Rnor_6.0 Ensembl	1	47,942,800 - 47,959,694 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102248 ⟹ ENSRNOP00000077397

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	47,672,470 - 47,691,065 (+)	Ensembl

RefSeq Acc Id:

NM_001113542 ⟹ NP_001107014

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,070,973 - 50,096,074 (+)	NCBI
mRatBN7.2	1	47,665,965 - 47,691,067 (+)	NCBI
Rnor_6.0	1	47,942,500 - 47,967,633 (+)	NCBI
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI
RGSC_v3.4	1	41,891,437 - 41,917,254 (+)	RGD
Celera	1	43,351,111 - 43,376,211 (+)	RGD

Sequence:

show sequence

CCGGCTAAGCTTGCAGAGCCCCCACGGGGCAGGTGCGAACCTCCGCGGACGGTCTCGGTGCGGC
TGCGGAGAGCCGCTTGCCCCTCCGCGCCCCGAGACCCCGAGCGGGCCGGCCTCGCCTCGTCTCT
TCTGGCCGGAGGCACCGGGCACGGTGACCGAGGCGGCGCCCGAGAGGCGCGTCTCGGGGTACAA
GATGACCAACGAAGAACCTCTTCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATG
GCACGGGATGAGTTAATTCTGAGATGGAAACAATATGAAGCATATGTTCAAGCTTTGGAGGGAA
AGTACACAGACCTTAATTCAAACGATGTGACTGGCTTAAGGGAATCTGAAGAAAAACTAAAGCA
GCAACAGCAGGAATCTGCACGCAGGGAGAACATCCTTGTCATGCGGCTAGCAACCAAGGAACAG
GAGATGCAAGAGTGCACCACTCAAATCCAGTACCTCAAGCAAGTTCAGCAGCCGAGTGTAGCCC
AACTGAGATCAACAATGGTAGACCCAGCGATCAACTTGTTTTTCCTAAAAATGAAAGGTGAACT
GGAACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTGCCTGGAAGTTTACGCCT
GATAGCCAAACAGGCAAAAAATTAATGGCGAAGTGTCGAATGCTTATCCAGGAGAACCAAGAGC
TTGGAAGGCAGCTGTCCCAGGGCCGTATTGCACAGCTTGAAGCCGAGTTGGCTTTACAGAAGAA
ATACAGTGAGGAGCTTAAAAGCAGTCAGGATGAACTGAATGACTTCATCATTCAACTTGACGAA
GAAGTAGAGGGTATGCAGAGCACCATTCTAGTTCTTCAGCAACAGTTGAAGGAGACTCGACAGC
AGTTGGCACAGTACCAGCAGCAGCAGTCTCAAGCTTCTGCTCCAAGTACCAGCAGGACTACATC
TTCTGAACCTGTGGATCAGGCAGAGGCCACAAGCAAAGACTGCAGTCGTCTGGCAAATGGACCA
AGTAATGGCAGCTCCTCCCGCCAGAGGACGTCTGGGTCTGGATTTCACAGGGAGGGGAGCACTC
CTGAGGATGACTTTCCTTCTTCTTCAGGGAACGGTAATAAGGCCTCCAACAGCTCAGAGGAGAG
AACTGGCAGAGGTAGTAGTTACATAAACCCACTCAGTGCGGGGTATGAAAGTGTAGACTCTCCC
ACGGGCAGTGAAAACTCTCTCACACATCACTCAAATGACACAGACTCCAGTCATGACCCTCAAG
AGGAGAAAGCAGTGAGTGGGAAAGGTAATCGAACTGTGGGTTCCCGCCATGTTCAGAATGGCTT
GGACTCAAGTGTAAATGTACAGGGTTCAATTTTGTAATATTTTTCCAGCAAATTTTTATACAGT
GTCATTTAATTGGGGGAAGGATACTGTCAAAAATTAATGCATACTTTTGTCACAATTTATACCC
TTTTGTGGGTGTGTTTTTGTTTTGTTTGGTTCTTTTTTTTTTTTTTTTAATTGCTTCAATACCT
CTGCTACTTTGAAAATTGTAACAGTTAATTACTTTGAACATTGCTAAAAGGACATTTTGTGTAG
GGTCAAGTTATTTTTATATGAGTTAATGTGAAGTTGTAAATGGGAATCTATAGCAGTGACGTCT
GTATAAATCTGTCTATCTAGAACCTGTGCTGTCAGGGCACTCTTCCTCACGCTGTTGTTACTCA
TGCACCATTCAGACTTGTTAGAGTAGATGTGGGCTTAGGACCGCCGAGTGTGCCCAGTACAGTA
GTTTTATCACTAAAGAGTTGGATGTGAGTCCTATAGTAGTTTCAGCGTTAGATAGTTTTTCCAC
CATACATCTGTGCATTCATCTTTAGCTGAACTGAATGTTTAAGAAATCCGTGTGCATAGTTACT
AAGTTTTTATGAATTGTTGTGTCCTGTTAATGCATATTGCCCTGTGACTCCAGTATATCTCACC
TGTACTGACCAAACCTAAATAAAAATTTTTATTGTAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001113543 ⟹ NP_001107015

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,070,973 - 50,088,138 (+)	NCBI
mRatBN7.2	1	47,665,965 - 47,683,131 (+)	NCBI
Rnor_6.0	1	47,942,500 - 47,959,697 (+)	NCBI
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI
RGSC_v3.4	1	41,891,437 - 41,917,254 (+)	RGD
Celera	1	43,351,111 - 43,368,274 (+)	NCBI

Sequence:

show sequence

CCGGCTAAGCTTGCAGAGCCCCCACGGGGCAGGTGCGAACCTCCGCGGACGGTCTCGGTGCGGC
TGCGGAGAGCCGCTTGCCCCTCCGCGCCCCGAGACCCCGAGCGGGCCGGCCTCGCCTCGTCTCT
TCTGGCCGGAGGCACCGGGCACGGTGACCGAGGCGGCGCCCGAGAGGCGCGTCTCGGGGTACAA
GATGACCAACGAAGAACCTCTTCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATG
GCACGGGATGAGTTAATTCTGAGATGGAAACAATATGAAGCATATGTTCAAGCTTTGGAGGGAA
AGTACACAGACCTTAATTCAAACGATGTGACTGGCTTAAGGGAATCTGAAGAAAAACTAAAGCA
GCAACAGCAGGAATCTGCACGCAGGGAGAACATCCTTGTCATGCGGCTAGCAACCAAGGAACAG
GAGATGCAAGAGTGCACCACTCAAATCCAGTACCTCAAGCAAGTTCAGCAGCCGAGTGTAGCCC
AACTGAGATCAACAATGGTAGACCCAGCGATCAACTTGTTTTTCCTAAAAATGAAAGGTGAACT
GGAACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTGCCTGGAAGTTTACGCCT
GATAGGTAAACAAATCATACTCCCCAGTCAAGACTTCCCTGACAGTCCCACCTCGAGAAAGCTG
TGGTGGGACAGCCAAGTACTCGTTTCCACACCAAGACTCAGACTTTTTGAGCCAAAAAAGCCAC
ATTCTTAGACTGTCCAGCTTGTAATGGTTAATGTAAAACTTACCAGATGAACCTTGTGTTTCAG
CTTCTTTCTCTTCCCCTCCCCCTTGCTTCAGAGGCCTGATGCCGTCGGACTATTCCGAAGAAGA
GGCCACCTCCGAAAAATTCCCCTTCTAGGACATGTAGACACTTGAAATGTTTCTGTTTGAAGAA
AATAGAGGGAAAAACAGAAGTCTTAAGTCTGTGGCACACTGTGTCTTCAGACAGTTTGGAGGAT
TGAAAACCTAGAGGTTTTAAATCATGAATTGAACATGTAAAATTCCAGTAAAATGTAAAAATGG
AATATGCATCGCTCTTAACCATGAGCATAGTGACTTAGAGACACTGTACATCAGTTATGCCAAT
AAGACTGTGGACTTCATGATTGTTGAACTACTGGGTCAAAACTCAAATGAGGTGAATTTTGCCT
TTAAAGGATTTACTTGCTAAGAACCAACTCTAATAGCCGTGAGACTATCACGTCATAGCTACCA
GTACAAGTAGTGCATATATTTATCCATTTAGCTTTGAGCTCTATATTACATAATGGAGCCTTAA
ATCTATGTGGTTTTTATCAATGGTTTGTTTTTTGAATGGTTGTGGAAACTGTAGATAACCTTAA
CCGAGGACTGTACAAACGTGAAGGTGTGGTCTCACACTTCAGGTTTAAACTGTTTGACGCATTA
TAAGCATTCATTTCACAACTAGATTGTATATGGTATTTGGCTGTGATGAGATTCCCATTATTCA
GTAAACCCTCATCTCATTCAGCAGGCACATGTTAAACAGCATTGTCGTTGGTGTTAAATGGGGG
AATGTGTTCCTTCATTGTATTTGGGGCCTTTTGTATCGAATTCTTGATATTAAATTAAATGTGC
CTTGAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001113544 ⟹ NP_001107016

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,071,273 - 50,088,138 (+)	NCBI
mRatBN7.2	1	47,666,265 - 47,683,131 (+)	NCBI
Rnor_6.0	1	47,942,800 - 47,959,697 (+)	NCBI
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI
RGSC_v3.4	1	41,891,437 - 41,917,254 (+)	RGD
Celera	1	43,351,411 - 43,368,274 (+)	NCBI

Sequence:

show sequence

AGACCCGCAAATAAAGGCTATCTCCGGGGCTGCGGCGGGAGGAGTGCGGGGGGGGGCCGGCGGC
GGCGCGGCCTCGGCCTGTGTGACTGGCGGCGCCCGCGCAGCCTCGGGCTGGGAAGGGTACAAGA
TGACCAACGAAGAACCTCTTCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATGGC
ACGGGATGAGTTAATTCTGAGATGGAAACAATATGAAGCATATGTTCAAGCTTTGGAGGGAAAG
TACACAGACCTTAATTCAAACGATGTGACTGGCTTAAGGGAATCTGAAGAAAAACTAAAGCAGC
AACAGCAGGAATCTGCACGCAGGGAGAACATCCTTGTCATGCGGCTAGCAACCAAGGAACAGGA
GATGCAAGAGTGCACCACTCAAATCCAGTACCTCAAGCAAGTTCAGCAGCCGAGTGTAGCCCAA
CTGAGATCAACAATGGTAGACCCAGCGATCAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGG
AACAGACTAAAGACAAACTGGAACAAGCCCAAAATGAACTGAGTGCCTGGAAGTTTACGCCTGA
TAGGTAAACAAATCATACTCCCCAGTCAAGACTTCCCTGACAGTCCCACCTCGAGAAAGCTGTG
GTGGGACAGCCAAGTACTCGTTTCCACACCAAGACTCAGACTTTTTGAGCCAAAAAAGCCACAT
TCTTAGACTGTCCAGCTTGTAATGGTTAATGTAAAACTTACCAGATGAACCTTGTGTTTCAGCT
TCTTTCTCTTCCCCTCCCCCTTGCTTCAGAGGCCTGATGCCGTCGGACTATTCCGAAGAAGAGG
CCACCTCCGAAAAATTCCCCTTCTAGGACATGTAGACACTTGAAATGTTTCTGTTTGAAGAAAA
TAGAGGGAAAAACAGAAGTCTTAAGTCTGTGGCACACTGTGTCTTCAGACAGTTTGGAGGATTG
AAAACCTAGAGGTTTTAAATCATGAATTGAACATGTAAAATTCCAGTAAAATGTAAAAATGGAA
TATGCATCGCTCTTAACCATGAGCATAGTGACTTAGAGACACTGTACATCAGTTATGCCAATAA
GACTGTGGACTTCATGATTGTTGAACTACTGGGTCAAAACTCAAATGAGGTGAATTTTGCCTTT
AAAGGATTTACTTGCTAAGAACCAACTCTAATAGCCGTGAGACTATCACGTCATAGCTACCAGT
ACAAGTAGTGCATATATTTATCCATTTAGCTTTGAGCTCTATATTACATAATGGAGCCTTAAAT
CTATGTGGTTTTTATCAATGGTTTGTTTTTTGAATGGTTGTGGAAACTGTAGATAACCTTAACC
GAGGACTGTACAAACGTGAAGGTGTGGTCTCACACTTCAGGTTTAAACTGTTTGACGCATTATA
AGCATTCATTTCACAACTAGATTGTATATGGTATTTGGCTGTGATGAGATTCCCATTATTCAGT
AAACCCTCATCTCATTCAGCAGGCACATGTTAAACAGCATTGTCGTTGGTGTTAAATGGGGGAA
TGTGTTCCTTCATTGTATTTGGGGCCTTTTGTATCGAATTCTTGATATTAAATTAAATGTGCCT
TGAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006227892 ⟹ XP_006227954

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,071,258 - 50,096,074 (+)	NCBI
mRatBN7.2	1	47,666,252 - 47,691,067 (+)	NCBI
Rnor_6.0	1	47,942,755 - 47,967,633 (+)	NCBI
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI

Sequence:

show sequence

ACGGCGGGGCCTGGTTTCCTCCCTCAGCGCCATTTTGTGGCTGCGAGACCCGCAAATAAAGGCT
ATCTCCGGGGCTGCGGCGGGAGGAGTGCGGGGGGGGGCCGGCGGCGGCGCGGCCTCGGCCTGTG
TGACTGGCGGCGCCCGCGCAGCCTCGGGCTGGGAAGGGTACAAGATGACCAACGAAGAACCTCT
TCCTAAAAAGGTCCGACTGAGTGAAACAGACTTCAAAGTTATGGCACGGGATGAGTTAATTCTG
AGATGGAAACAATATGAAGCATATGTTCAAGCTTTGGAGGGAAAGTACACAGACCTTAATTCAA
ACGATGTGACTGGCTTAAGGGAATCTGAAGAAAAACTAAAGCAGCAACAGCAGGAATCTGCACG
CAGGGAGAACATCCTTGTCATGCGGCTAGCAACCAAGGAACAGGAGATGCAAGAGTGCACCACT
CAAATCCAGTACCTCAAGCAAGTTCAGCAGCCGAGTGTAGCCCAACTGAGATCAACAATGGTAG
ACCCAGCGATCAACTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACT
GGAACAAGCCCAAAATGAACTGAGTGCCTGGAAGTTTACGCCTGATAGCCAAACAGGCAAAAAA
TTAATGGCGAAGTGTCGAATGCTTATCCAGGAGAACCAAGAGCTTGGAAGGCAGCTGTCCCAGG
GCCGTATTGCACAGCTTGAAGCCGAGTTGGCTTTACAGAAGAAATACAGTGAGGAGCTTAAAAG
CAGTCAGGATGAACTGAATGACTTCATCATTCAACTTGACGAAGAAGTAGAGGGTATGCAGAGC
ACCATTCTAGTTCTTCAGCAACAGTTGAAGGAGACTCGACAGCAGTTGGCACAGTACCAGCAGC
AGCAGTCTCAAGCTTCTGCTCCAAGTACCAGCAGGACTACATCTTCTGAACCTGTGGATCAGGC
AGAGGCCACAAGCAAAGACTGCAGTCGTCTGGCAAATGGACCAAGTAATGGCAGCTCCTCCCGC
CAGAGGACGTCTGGGTCTGGATTTCACAGGGAGGGGAGCACTCCTGAGGATGACTTTCCTTCTT
CTTCAGGGAACGGTAATAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGCAGAGGTAGTAGTTA
CATAAACCCACTCAGTGCGGGGTATGAAAGTGTAGACTCTCCCACGGGCAGTGAAAACTCTCTC
ACACATCACTCAAATGACACAGACTCCAGTCATGACCCTCAAGAGGAGAAAGCAGTGAGTGGGA
AAGGTAATCGAACTGTGGGTTCCCGCCATGTTCAGAATGGCTTGGACTCAAGTGTAAATGTACA
GGGTTCAATTTTGTAATATTTTTCCAGCAAATTTTTATACAGTGTCATTTAATTGGGGGAAGGA
TACTGTCAAAAATTAATGCATACTTTTGTCACAATTTATACCCTTTTGTGGGTGTGTTTTTGTT
TTGTTTGGTTCTTTTTTTTTTTTTTTTAATTGCTTCAATACCTCTGCTACTTTGAAAATTGTAA
CAGTTAATTACTTTGAACATTGCTAAAAGGACATTTTGTGTAGGGTCAAGTTATTTTTATATGA
GTTAATGTGAAGTTGTAAATGGGAATCTATAGCAGTGACGTCTGTATAAATCTGTCTATCTAGA
ACCTGTGCTGTCAGGGCACTCTTCCTCACGCTGTTGTTACTCATGCACCATTCAGACTTGTTAG
AGTAGATGTGGGCTTAGGACCGCCGAGTGTGCCCAGTACAGTAGTTTTATCACTAAAGAGTTGG
ATGTGAGTCCTATAGTAGTTTCAGCGTTAGATAGTTTTTCCACCATACATCTGTGCATTCATCT
TTAGCTGAACTGAATGTTTAAGAAATCCGTGTGCATAGTTACTAAGTTTTTATGAATTGTTGTG
TCCTGTTAATGCATATTGCCCTGTGACTCCAGTATATCTCACCTGTACTGACCAAACCTAAATA
AAAATTTTTATTGTAA

hide sequence

RefSeq Acc Id:

XM_006227893 ⟹ XP_006227955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,071,434 - 50,096,074 (+)	NCBI
mRatBN7.2	1	47,666,605 - 47,691,067 (+)	NCBI
Rnor_6.0	1	47,942,925 - 47,967,633 (+)	NCBI
Rnor_5.0	1	51,781,701 - 51,806,726 (-)	NCBI

Sequence:

show sequence

GCGGCCCGCGGCGGGAATGGCCACGAGGGCCTGCAGGGACGGGAAGCGAGGCGCGGCCGCCCTG
GACCCGGCGAAACGCACTCCAGGCCCGAAGGGCGACCGGGCTTGCGGCCGCGCTGGCTTCCCGT
TAGTCAGAGCGGTTTGCTGCTCGTGGGGATACTTGCACCGTTTCACAGCCATTCTGCTCCCGTT
CCTGACGGCAGGGGACAAGGCGGGCGTTCCCGCGACTGGGGAGGCGGGGAGGCCGGAGGCCGCC
CTCTCGGGGCTGACTGGCCATGCCTGTCCTTTCCCCGCCTCTGTCGCCCCCTCCCACCTTCCAG
GGTTCGTCACCCGGGACCTAGAGGGTACAAGATGACCAACGAAGAACCTCTTCCTAAAAAGGTC
CGACTGAGTGAAACAGACTTCAAAGTTATGGCACGGGATGAGTTAATTCTGAGATGGAAACAAT
ATGAAGCATATGTTCAAGCTTTGGAGGGAAAGTACACAGACCTTAATTCAAACGATGTGACTGG
CTTAAGGGAATCTGAAGAAAAACTAAAGCAGCAACAGCAGGAATCTGCACGCAGGGAGAACATC
CTTGTCATGCGGCTAGCAACCAAGGAACAGGAGATGCAAGAGTGCACCACTCAAATCCAGTACC
TCAAGCAAGTTCAGCAGCCGAGTGTAGCCCAACTGAGATCAACAATGGTAGACCCAGCGATCAA
CTTGTTTTTCCTAAAAATGAAAGGTGAACTGGAACAGACTAAAGACAAACTGGAACAAGCCCAA
AATGAACTGAGTGCCTGGAAGTTTACGCCTGATAGCCAAACAGGCAAAAAATTAATGGCGAAGT
GTCGAATGCTTATCCAGGAGAACCAAGAGCTTGGAAGGCAGCTGTCCCAGGGCCGTATTGCACA
GCTTGAAGCCGAGTTGGCTTTACAGAAGAAATACAGTGAGGAGCTTAAAAGCAGTCAGGATGAA
CTGAATGACTTCATCATTCAACTTGACGAAGAAGTAGAGGGTATGCAGAGCACCATTCTAGTTC
TTCAGCAACAGTTGAAGGAGACTCGACAGCAGTTGGCACAGTACCAGCAGCAGCAGTCTCAAGC
TTCTGCTCCAAGTACCAGCAGGACTACATCTTCTGAACCTGTGGATCAGGCAGAGGCCACAAGC
AAAGACTGCAGTCGTCTGGCAAATGGACCAAGTAATGGCAGCTCCTCCCGCCAGAGGACGTCTG
GGTCTGGATTTCACAGGGAGGGGAGCACTCCTGAGGATGACTTTCCTTCTTCTTCAGGGAACGG
TAATAAGGCCTCCAACAGCTCAGAGGAGAGAACTGGCAGAGGTAGTAGTTACATAAACCCACTC
AGTGCGGGGTATGAAAGTGTAGACTCTCCCACGGGCAGTGAAAACTCTCTCACACATCACTCAA
ATGACACAGACTCCAGTCATGACCCTCAAGAGGAGAAAGCAGTGAGTGGGAAAGGTAATCGAAC
TGTGGGTTCCCGCCATGTTCAGAATGGCTTGGACTCAAGTGTAAATGTACAGGGTTCAATTTTG
TAATATTTTTCCAGCAAATTTTTATACAGTGTCATTTAATTGGGGGAAGGATACTGTCAAAAAT
TAATGCATACTTTTGTCACAATTTATACCCTTTTGTGGGTGTGTTTTTGTTTTGTTTGGTTCTT
TTTTTTTTTTTTTTAATTGCTTCAATACCTCTGCTACTTTGAAAATTGTAACAGTTAATTACTT
TGAACATTGCTAAAAGGACATTTTGTGTAGGGTCAAGTTATTTTTATATGAGTTAATGTGAAGT
TGTAAATGGGAATCTATAGCAGTGACGTCTGTATAAATCTGTCTATCTAGAACCTGTGCTGTCA
GGGCACTCTTCCTCACGCTGTTGTTACTCATGCACCATTCAGACTTGTTAGAGTAGATGTGGGC
TTAGGACCGCCGAGTGTGCCCAGTACAGTAGTTTTATCACTAAAGAGTTGGATGTGAGTCCTAT
AGTAGTTTCAGCGTTAGATAGTTTTTCCACCATACATCTGTGCATTCATCTTTAGCTGAACTGA
ATGTTTAAGAAATCCGTGTGCATAGTTACTAAGTTTTTATGAATTGTTGTGTCCTGTTAATGCA
TATTGCCCTGTGACTCCAGTATATCTCACCTGTACTGACCAAACCTAAATAAAAATTTTTATTG
TAA

hide sequence

RefSeq Acc Id:

XM_039086890 ⟹ XP_038942818

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,088,454 - 50,096,074 (+)	NCBI
mRatBN7.2	1	47,682,112 - 47,691,067 (+)	NCBI

RefSeq Acc Id:

XM_039086893 ⟹ XP_038942821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,087,183 - 50,096,074 (+)	NCBI
mRatBN7.2	1	47,682,112 - 47,691,067 (+)	NCBI

RefSeq Acc Id:

XM_039086894 ⟹ XP_038942822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,071,258 - 50,088,138 (+)	NCBI
mRatBN7.2	1	47,666,252 - 47,683,133 (+)	NCBI

RefSeq Acc Id:

XM_063270739 ⟹ XP_063126809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,071,024 - 50,088,138 (+)	NCBI

RefSeq Acc Id:

XM_063270747 ⟹ XP_063126817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	50,071,518 - 50,088,138 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001107014	(Get FASTA)	NCBI Sequence Viewer
	NP_001107015	(Get FASTA)	NCBI Sequence Viewer
	NP_001107016	(Get FASTA)	NCBI Sequence Viewer
	XP_006227954	(Get FASTA)	NCBI Sequence Viewer
	XP_006227955	(Get FASTA)	NCBI Sequence Viewer
	XP_038942818	(Get FASTA)	NCBI Sequence Viewer
	XP_038942821	(Get FASTA)	NCBI Sequence Viewer
	XP_038942822	(Get FASTA)	NCBI Sequence Viewer
	XP_063126809	(Get FASTA)	NCBI Sequence Viewer
	XP_063126817	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83696	(Get FASTA)	NCBI Sequence Viewer
	EDL83697	(Get FASTA)	NCBI Sequence Viewer
	EDL83698	(Get FASTA)	NCBI Sequence Viewer
	EDL83699	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025936
	ENSRNOP00000025936.5
	ENSRNOP00000072376
	ENSRNOP00000072376.1
	ENSRNOP00000077397
	ENSRNOP00000077397.1

RefSeq Acc Id:	NP_001107014 ⟸ NM_001113542
- Peptide Label:	isoform a
- UniProtKB:	D3ZPY0 (UniProtKB/TrEMBL), A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQ QQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGEL EQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKK YSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQASAPSTSRTTS SEPVDQAEATSKDCSRLANGPSNGSSSRQRTSGSGFHREGSTPEDDFPSSSGNGNKASNSSEER TGRGSSYINPLSAGYESVDSPTGSENSLTHHSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGL DSSVNVQGSIL hide sequence

RefSeq Acc Id:	NP_001107015 ⟸ NM_001113543
- Peptide Label:	isoform b
- UniProtKB:	A0A0G2K2U2 (UniProtKB/TrEMBL), A6KP27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQ QQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGEL EQTKDKLEQAQNELSAWKFTPDR hide sequence

RefSeq Acc Id:	NP_001107016 ⟸ NM_001113544
- Peptide Label:	isoform b
- UniProtKB:	A0A0G2K2U2 (UniProtKB/TrEMBL), A6KP27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQ QQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGEL EQTKDKLEQAQNELSAWKFTPDR hide sequence

RefSeq Acc Id:	XP_006227954 ⟸ XM_006227892
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPY0 (UniProtKB/TrEMBL), A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQ QQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGEL EQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKK YSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQASAPSTSRTTS SEPVDQAEATSKDCSRLANGPSNGSSSRQRTSGSGFHREGSTPEDDFPSSSGNGNKASNSSEER TGRGSSYINPLSAGYESVDSPTGSENSLTHHSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGL DSSVNVQGSIL hide sequence

RefSeq Acc Id:	XP_006227955 ⟸ XM_006227893
- Peptide Label:	isoform X1
- UniProtKB:	D3ZPY0 (UniProtKB/TrEMBL), A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEEKLKQ QQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLFFLKMKGEL EQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRIAQLEAELALQKK YSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQQQQSQASAPSTSRTTS SEPVDQAEATSKDCSRLANGPSNGSSSRQRTSGSGFHREGSTPEDDFPSSSGNGNKASNSSEER TGRGSSYINPLSAGYESVDSPTGSENSLTHHSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGL DSSVNVQGSIL hide sequence

RefSeq Acc Id:

ENSRNOP00000072376 ⟸ ENSRNOT00000079312

RefSeq Acc Id:

ENSRNOP00000025936 ⟸ ENSRNOT00000025936

RefSeq Acc Id:	XP_038942822 ⟸ XM_039086894
- Peptide Label:	isoform X3
- UniProtKB:	A6KP27 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942818 ⟸ XM_039086890
- Peptide Label:	isoform X2
- UniProtKB:	A6KP29 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038942821 ⟸ XM_039086893
- Peptide Label:	isoform X2
- UniProtKB:	A6KP29 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000077397 ⟸ ENSRNOT00000102248

RefSeq Acc Id:	XP_063126809 ⟸ XM_063270739
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063126817 ⟸ XM_063270747
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZPY0-F1-model_v2	AlphaFold	D3ZPY0	1-395	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689612

Promoter ID:

EPDNEW_R136

Type:

initiation region

Name:

Wtap_2

Description:

WT1 associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R137

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	47,942,502 - 47,942,562	EPDNEW

RGD ID:

13689613

Promoter ID:

EPDNEW_R137

Type:

multiple initiation site

Name:

Wtap_1

Description:

WT1 associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R136

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	47,942,783 - 47,942,843	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563824	AgrOrtholog
BioCyc Gene	G2FUF-61595	BioCyc
Ensembl Genes	ENSRNOG00000019091	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025936	ENTREZGENE
	ENSRNOT00000025936.8	UniProtKB/TrEMBL
	ENSRNOT00000079312	ENTREZGENE
	ENSRNOT00000079312.2	UniProtKB/TrEMBL
	ENSRNOT00000102248.1	UniProtKB/TrEMBL
InterPro	WTAP	UniProtKB/TrEMBL
KEGG Report	rno:499020	UniProtKB/TrEMBL
NCBI Gene	499020	ENTREZGENE
PANTHER	PRE-MRNA-SPLICING REGULATOR WTAP	UniProtKB/TrEMBL
	PTHR15217	UniProtKB/TrEMBL
Pfam	Wtap	UniProtKB/TrEMBL
PhenoGen	Wtap	PhenoGen
RatGTEx	ENSRNOG00000019091	RatGTEx
UniProt	A0A0G2K2U2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5XW36	ENTREZGENE, UniProtKB/TrEMBL
	A6KP27	ENTREZGENE, UniProtKB/TrEMBL
	A6KP29	ENTREZGENE, UniProtKB/TrEMBL
	D3ZPY0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-21	Wtap	WT1 associated protein	Wtap	Wilms tumor 1 associated protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-10-23	Wtap	Wilms tumor 1 associated protein	Wtap	Wilms' tumour 1-associating protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Wtap	Wilms' tumour 1-associating protein	RGD1563824_predicted	similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-10	RGD1563824_predicted	similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted)		similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog) (predicted)	Name updated	1299863	APPROVED
2006-03-07	RGD1563824_predicted	similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog) (predicted)	LOC499020	similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499020	similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar