Rps29-ps21 (ribosomal protein S29, pseudogene 21) - Rat Genome Database

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Gene: Rps29-ps21 (ribosomal protein S29, pseudogene 21) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps29-ps21 (Ensembl: LOC108349831)
Name: ribosomal protein S29, pseudogene 21 (Ensembl:40S ribosomal protein S29 pseudogene)
RGD ID: 11452897
Description: Predicted to enable RNA binding activity and zinc ion binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S29 pseudogene; 40S ribosomal protein S29-like; LOC108349831; ribosomal protein S29 like 2; Rps29l2; small ribosomal subunit protein uS14-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,081,027 - 23,081,361 (-)NCBIGRCr8
mRatBN7.2121,261,797 - 21,262,125 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,261,896 - 21,262,066 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0122,306,372 - 22,306,689 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera120,012,578 - 20,012,895 (-)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rps29-ps21
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039095530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000050726   ⟹   ENSRNOP00000040703
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl121,261,896 - 21,262,066 (-)Ensembl
RefSeq Acc Id: XM_039095530   ⟹   XP_038951458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8123,081,027 - 23,081,361 (-)NCBI
mRatBN7.2121,261,797 - 21,262,125 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038951458 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000040703
  ENSRNOP00000040703.3
  ENSRNOP00000097962.1
Reference Protein Sequences
RefSeq Acc Id: XP_038951458   ⟸   XM_039095530
- UniProtKB: A0A8L2ULK7 (UniProtKB/TrEMBL),   A0A8I6GMA6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000040703   ⟸   ENSRNOT00000050726

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62099 BioCyc
Ensembl Genes ENSRNOG00000004196 UniProtKB/TrEMBL
  ENSRNOG00000068524 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050726.5 UniProtKB/TrEMBL
  ENSRNOT00000116660.1 UniProtKB/TrEMBL
InterPro 40S_S29/30S_S14z UniProtKB/TrEMBL
  Ribosomal_S14 UniProtKB/TrEMBL
  Ribosomal_S14/S29 UniProtKB/TrEMBL
  Ribosomal_S14_CS UniProtKB/TrEMBL
  Ribosomal_S14_type-Z_arc UniProtKB/TrEMBL
NCBI Gene LOC108349831 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S29 UniProtKB/TrEMBL
  PTHR12010 UniProtKB/TrEMBL
Pfam Ribosomal_S14 UniProtKB/TrEMBL
PhenoGen Rps29-ps21 PhenoGen
PROSITE RIBOSOMAL_S14 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004196 RatGTEx
  ENSRNOG00000068524 RatGTEx
UniProt A0A8I6GMA6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2ULK7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-12-01 Rps29-ps21  ribosomal protein S29, pseudogene 21  Rps29l2  ribosomal protein S29 like 2  Name and Symbol changed 629549 APPROVED
2023-10-16 Rps29l2  ribosomal protein S29 like 2  Rps29l1  ribosomal protein S29 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 Rps29l1  ribosomal protein S29 like 1  LOC108349831  40S ribosomal protein S29 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108349831  40S ribosomal protein S29 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL