Tppp (tubulin polymerization promoting protein)

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Gene: Tppp (tubulin polymerization promoting protein) Rattus norvegicus

Analyze

Symbol:

Tppp

Name:

tubulin polymerization promoting protein

RGD ID:

1310121

Description:

Predicted to enable several functions, including magnesium ion binding activity; microtubule nucleator activity; and protein homodimerization activity. Involved in myelin assembly and positive regulation of myelination. Located in postsynaptic Golgi apparatus. Orthologous to human TPPP (tubulin polymerization promoting protein); INTERACTS WITH (+)-schisandrin B; bisphenol A; Brodifacoum.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC361466; p25-alpha; RGD1310121; similar to 25 kDa brain-specific protein (p25-alpha); TPPP/p25; tubulin polymerization-promoting protein

RGD Orthologs

Human

Mouse

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	29,257,111 - 29,281,134 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	29,261,255 - 29,281,134 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	29,062,920 - 29,082,772 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	35,062,773 - 35,082,625 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	29,263,534 - 29,283,386 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	31,866,755 - 31,890,778 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,870,899 - 31,890,778 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	33,291,317 - 33,315,340 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	30,067,686 - 30,087,564 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	30,070,826 - 30,081,026 (-)	NCBI
Celera	1	27,912,466 - 27,932,345 (-)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 2 (ISO)

COVID-19 (ISO)

genetic disease (ISO)

idiopathic pulmonary fibrosis (ISO)

Parkinsonism-Dystonia, Infantile (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

cadmium dichloride (ISO)

carbon nanotube (ISO)

copper(II) chloride (ISO)

dimethylarsinic acid (ISO)

dioxygen (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

folic acid (ISO)

gentamycin (EXP)

hydrogen cyanide (ISO)

irinotecan (ISO)

lead(0) (ISO)

lead(2+) (ISO)

methylarsonic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

phenformin (EXP)

phenobarbital (ISO)

potassium cyanide (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

progesterone (ISO)

resveratrol (ISO)

sevoflurane (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

astral microtubule organization (ISO,ISS)

cell division (IEA)

microtubule bundle formation (IBA,ISO,ISS)

microtubule nucleation by microtubule organizing center (ISO,ISS)

microtubule polymerization (IBA,IEA,ISO,ISS)

myelin assembly (IMP,ISO)

negative regulation of tubulin deacetylation (ISO,ISS)

oligodendrocyte development (ISO,ISS)

oligodendrocyte differentiation (ISO,ISS)

positive regulation of myelination (IMP,ISO)

positive regulation of protein polymerization (IBA,ISO,ISS)

positive regulation of protein-containing complex assembly (ISS)

regulation of microtubule cytoskeleton organization (ISO,ISS)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

Golgi apparatus (ISO)

microtubule (IBA,ISO)

microtubule bundle (ISO)

mitochondrion (ISO)

mitotic spindle (ISO,ISS)

nucleus (ISO)

perinuclear region of cytoplasm (ISO,ISS)

postsynaptic Golgi apparatus (IDA)

Molecular Function

GTPase activity (ISO,ISS)

magnesium ion binding (ISO,ISS)

microtubule binding (ISS)

microtubule nucleator activity (ISO)

molecular function activator activity (ISO)

protein binding (IPI,ISO)

protein dimerization activity (ISO)

protein homodimerization activity (ISO,ISS)

tubulin binding (IBA,IEA,ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	The Golgi Outpost Protein TPPP Nucleates Microtubules and Is Critical for Myelination.	Fu MM, etal., Cell. 2019 Sep 19;179(1):132-146.e14. doi: 10.1016/j.cell.2019.08.025. Epub 2019 Sep 12.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Tubulin polymerization-promoting protein (TPPP/p25) is critical for oligodendrocyte differentiation.	Lehotzky A, etal., Glia. 2010 Jan 15;58(2):157-68. doi: 10.1002/glia.20909.
4.	p25alpha Stimulates alpha-synuclein aggregation and is co-localized with aggregated alpha-synuclein in alpha-synucleinopathies.	Lindersson E, etal., J Biol Chem. 2005 Feb 18;280(7):5703-15. Epub 2004 Dec 7.
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17105200	PMID:17634366	PMID:18028908	PMID:18563798	PMID:20308065	PMID:21316364	PMID:21832049	PMID:22328514	PMID:23093407	PMID:23629650	PMID:26289831

Genomics

Comparative Map Data

Tppp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	29,257,111 - 29,281,134 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	29,261,255 - 29,281,134 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	29,062,920 - 29,082,772 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	1	35,062,773 - 35,082,625 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	1	29,263,534 - 29,283,386 (-)	NCBI	Rnor_WKY
Rnor_6.0	1	31,866,755 - 31,890,778 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	31,870,899 - 31,890,778 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	33,291,317 - 33,315,340 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	30,067,686 - 30,087,564 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	30,070,826 - 30,081,026 (-)	NCBI
Celera	1	27,912,466 - 27,932,345 (-)	NCBI		Celera
Cytogenetic Map	1	p11	NCBI

TPPP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	659,862 - 700,727 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	5	659,862 - 693,352 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	659,977 - 693,467 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	712,977 - 746,510 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	756,043 - 773,959 (-)	NCBI		Celera
Cytogenetic Map	5	p15.33	NCBI
HuRef	5	643,544 - 661,474 (-)	NCBI		HuRef
CHM1_1	5	655,371 - 689,478 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	657,955 - 690,778 (-)	NCBI		T2T-CHM13v2.0

Tppp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	74,157,538 - 74,183,872 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	74,157,526 - 74,183,872 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	74,009,419 - 74,035,753 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	74,009,407 - 74,035,753 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	74,146,867 - 74,173,201 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	74,475,480 - 74,501,755 (+)	NCBI		MGSCv36	mm8
Celera	13	76,339,205 - 76,365,541 (+)	NCBI		Celera
Cytogenetic Map	13	C1	NCBI

TPPP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	5	779,090 - 797,445 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	779,090 - 797,979 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	5	721,703 - 739,788 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

TPPP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	11,633,054 - 11,645,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	11,629,378 - 11,642,639 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	16,132,292 - 16,155,356 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	11,523,014 - 11,546,088 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	34	11,573,721 - 11,596,758 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	11,553,456 - 11,576,668 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	11,771,142 - 11,787,387 (+)	NCBI		UU_Cfam_GSD_1.0

Tppp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	244,680,995 - 244,721,700 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936815	842,087 - 883,368 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936815	842,279 - 882,985 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TPPP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	79,542,928 - 79,556,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	79,535,037 - 79,556,383 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

TPPP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	532,328 - 565,826 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	538,739 - 552,024 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	27,670,650 - 27,835,187 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tppp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	355,890 - 375,561 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	355,887 - 375,564 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tppp
81 total Variants

miRNA Target Status

Confirmed Target Of

miRNA Gene	Mature miRNA	Method Name	Result Type	Data Type	Support Type	PMID
Mir206	rno-miR-206-3p	Mirtarbase	external_info	Immunoblot//Immunocytochemistry//Luciferase report	Functional MTI	19606501

Predicted Target Of

	Summary Value
Count of predictions:	138
Count of miRNA genes:	110
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000039166
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	1	32356093	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	1	32356093	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	1	32356093	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1578650	Bmd6	Bone mineral density QTL 6	12.2		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	1	509108	43284926	Rat
1578651	Bmd7	Bone mineral density QTL 7	14.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	1	509108	43284926	Rat
1578669	Bss9	Bone structure and strength QTL 9	6.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	1	509108	43284926	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	2244390	43433040	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	4393289	49393289	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	9856001	54856001	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	10992065	55992065	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	11481482	32355910	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	11835181	56835181	Rat
5684998	Bss101	Bone structure and strength QTL 101	3.6		tibia strength trait (VT:1000284)	tibia ultimate force (CMO:0001734)	1	15431621	49361612	Rat
5684999	Bss102	Bone structure and strength QTL 102	5.5	0.00000072	tibia strength trait (VT:1000284)	tibia stiffness (CMO:0001735)	1	15431621	49361612	Rat
631494	Bp95	Blood pressure QTL 95	40	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	16206210	49268520	Rat
634353	Rends2	Renal damage susceptibility QTL 2		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	1	19333571	56983283	Rat
1558642	Prcr2	Prostate cancer resistance QTL 2	4.3		prostate integrity trait (VT:0010571)	area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)	1	20763158	44095856	Rat
724520	Bp145	Blood pressure QTL 145	2.1	0.0024	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	20784828	65784828	Rat
1357397	Bw41	Body weight QTL 41	4.19	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	1	22340647	49361612	Rat
1357401	Bw43	Body weight QTL 43	3.75		body mass (VT:0001259)	body weight (CMO:0000012)	1	22340647	49361612	Rat
1357400	Bw62	Body weight QTL62	4.05		inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	1	22340647	67340647	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	22340647	102268831	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	28879780	78430678	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	17							31		8	11
Low	1	26	37	21	19	21	8	11	43	35	24		8
Below cutoff			20	20		20					9

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227794	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000039166 ⟹ ENSRNOP00000034617

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	29,261,255 - 29,281,134 (-)	Ensembl
Rnor_6.0 Ensembl	1	31,870,899 - 31,890,778 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000081225 ⟹ ENSRNOP00000072201

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	29,261,255 - 29,272,513 (-)	Ensembl
Rnor_6.0 Ensembl	1	31,870,983 - 31,881,531 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115773 ⟹ ENSRNOP00000085473

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	29,261,255 - 29,281,033 (-)	Ensembl

RefSeq Acc Id:

NM_001108461 ⟹ NP_001101931

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	29,261,255 - 29,281,134 (-)	NCBI
Rnor_6.0	1	31,870,899 - 31,890,778 (-)	NCBI
Rnor_5.0	1	33,291,317 - 33,315,340 (-)	NCBI
RGSC_v3.4	1	30,067,686 - 30,087,564 (-)	RGD
Celera	1	27,912,466 - 27,932,345 (-)	RGD

Sequence:

show sequence

GCGGACTGCTCAGGGAGCTCAGCGCCCCCGGGCTCGCGTCTAGTCGCGGAGGCGCAGCAGTGGA
CGCGTTTTGGAGCAACATGGCTGACAGCAAGGCCAAGCCCACCAAAGCTGCCAACAAGACACCA
CCCAAGTCCCCAGGAGACCCAGCCAAGGCTGCTAAGAGGTTGTCGCTGGAGTCAGAGGGGGCCA
ATGAGGGTGCAGCTGCAGCCCCTGAGCTCAGTGCCCTGGAGGAGGCCTTCCGGCGGTTTGCAGT
ACACGGGGACACCAGGGCCACAGGAAAGGAGATGCACGGCAAGAACTGGTCAAAACTGTGCAAG
GACTGCCACGTGATCGACGGGAAGAACGTGACCGTCACCGACGTGGACATCGTCTTCAGCAAGA
TCAAAGGGAAGTCCTGCAGGACCATCACCTTTGAGCAGTTCCAGGAGGCACTGGAGGAACTGGC
CAAGAAGCGGTTCAAGGATAAGAGCAGCGAGGAAGCCGTGCGTGAGGTGCACCGACTCATCGAG
GGCCGAGCACCAGTCATCTCTGGCGTCACGAAAGCTGTGTCCTCACCCACAGTGTCACGGCTCA
CGGATACCAGCAAGTTCACAGGCTCCCACAAAGAGCGCTTCGACCAATCAGGAAAGGGCAAGGG
CAAAGCTGGCCGCGTGGACCTGGTGGATGAGTCAGGCTACGTGCCTGGTTACAAGCATGCGGGC
ACCTATGACCAGAAGGTGCAGGGGGGCAAGTAGCCTTACGGGCTGGAGCTCCGGACACTACAGG
TGGCAGGCACAGGACTTACACCCATTGCACTTCATTACATTCCTATGTTAACTGGGCAGAACTC
AGAATGCACCTCCACTAGGCGATGGTGGGGGCGATGCCCAGGCCTCCTCCTGCTGGGTGCTTCG
ACACTTCTCCCTCAGACCCCAGGTTTGGGCCGTGATTCATTGTCCTGTCCTAACATACCTGCCC
TGTCCACAGCTGGGAAGTGGACTGCTCTTTCCAAACTGTCTCCCAGGATCATACCACACT

hide sequence

RefSeq Acc Id:

XM_006227793 ⟹ XP_006227855

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	29,257,111 - 29,280,728 (-)	NCBI
Rnor_6.0	1	31,866,755 - 31,890,442 (-)	NCBI
Rnor_5.0	1	33,291,317 - 33,315,340 (-)	NCBI

Sequence:

show sequence

GGCCTCGCCGGGCCCCAGGTCGCTGCCCGAGGAACCTGGTGGGAAACAGGGTAAAAAGAAGCCA
CCGCCCGGAGCCGCGCATATTGACGCTGGAGCTGCTGGGGCGTTCTTGGGTCTGGAATCTTGAG
TGCGCGTTGCGTCCTGCAGGTGACAGTGCCTGTTCGCTCCACCACTCTCCTTTCAAGCCTGCAT
CTCTCATTCGAGATGGCGAGGGTTCTGTCAGGGTCTCGTGTTGAATGCTCGTATTTGCACGTAG
AAGAGGGAGGATTTGACCCTTGCTGGGCGGTTTCGGTTATGTAAACGAGGCCTTGAACAAGCAA
CATGGCTGACAGCAAGGCCAAGCCCACCAAAGCTGCCAACAAGACACCACCCAAGTCCCCAGGA
GACCCAGCCAAGGCTGCTAAGAGGTTGTCGCTGGAGTCAGAGGGGGCCAATGAGGGTGCAGCTG
CAGCCCCTGAGCTCAGTGCCCTGGAGGAGGCCTTCCGGCGGTTTGCAGTACACGGGGACACCAG
GGCCACAGGAAAGGAGATGCACGGCAAGAACTGGTCAAAACTGTGCAAGGACTGCCACGTGATC
GACGGGAAGAACGTGACCGTCACCGACGTGGACATCGTCTTCAGCAAGATCAAAGGGAAGTCCT
GCAGGACCATCACCTTTGAGCAGTTCCAGGAGGCACTGGAGGAACTGGCCAAGAAGCGGTTCAA
GGATAAGAGCAGCGAGGAAGCCGTGCGTGAGGTGCACCGACTCATCGAGGGCCGAGCACCAGTC
ATCTCTGGCGTCACGAAAGCTGTGTCCTCACCCACAGTGTCACGGCTCACGGATACCAGCAAGT
TCACAGGCTCCCACAAAGAGCGCTTCGACCAATCAGGAAAGGGCAAGGGCAAAGCTGGCCGCGT
GGACCTGGTGGATGAGTCAGGCTACGTGCCTGGTTACAAGCATGCGGGCACCTATGACCAGAAG
GTGCAGGGGGGCAAGTAGCCTTACGGGCTGGAGCTCCGGACACTACAGGTGGCAGGCACAGGAC
TTACACCCATTGCACTTCATTACATTCCTATGTTAACTGGGCAGAACTCAGAATGCACCTCCAC
TAGGCGATGGTGGGGGCGATGCCCAGGCCTCCTCCTGCTGGGTGCTTCGACACTTCTCCCTCAG
ACCCCAGGTTTGGGCCGTGATTCATTGTCCTGTCCTAACATACCTGCCCTGTCCACAGCTGGGA
AGTGGACTGCTCTTTCCAAACTGTCTCCCAGGATCATACCACACTGGCCACTCGAGCTGCACGT
AAAAGGGGTGTTCTGGGTACTGGCAGAAGTAAGGGTGAGCAGATGTGAGAACTCACGCTGGCTT
TATCTAGGCACTTGTAGGGCGGCAGGAGCTAAGGAACTAACCAACCGGATAGAGTAATCCTAAA
CAGGCCGCTTCATCCTTTATGACCACAGCACACAACTGAGGCTACTCGGTGGTGTGCCAATGTG
TGTGTGAACAATTCACATCAGTACACATGCATGTGCACACGCGCGAGCACACACACACACACAC
ACACACACACACACACACACACACACACACAGCTTCACCAACCAAGTCTGTGCTGAGAGTGGCC
AAGAGAAAAATGGAAGCTCCCCGGTGACCAGAGGAGTAATATGAAGCTGGAAGTTTCTTCAGTG
TTGTTCTAAGAAATGACAAGGCTATGTGCTTGGTCTCAAGAGTGATCCAGGGGGATCCGGGACA
TCAAGCTGCCATGCCCCATCACCAGGTTGGGACACACATGAGGCTGAATCACTTCATCCAGACC
AGGCCTGACAGTTATCCCACCAATGGGACAGAAGCTCTTGCCAGCGCGAGTTATGCTGTGTTTT
GCTCAAAACCATGTGTCTTCAGCTCAGTGGAATCTTCTCTGGGTTCAGATTTCCTAACTTTGAT
CACAAGTGCAAGTGCAGGGCACTGGACACCAGAACCAGACCCAAGAAAGATTTTCAGCATCAGC
TAAGGCTTCTTTTCCTGCCGCAAGAGAGAAGTCAGGACTGAGCTCTTCCACGAATGAGGGTGCC
GCTTAGCCAGGCCCACAGACCTGTACTATTCTCAAAAGAGCAGCACTTGTTCCTTTGCATTAAC
ACAGCCCTAGCCTTGCATGCAACTTGGTGAACTGTGTAGCCTTGTTCCTAGAAAGAGCACAGTG
GCCTCGGGATCTGCTTCCCGGAGCAGATGGCTGTTGGGGGTGGGAGTGTGTCTTACGCGGCTTG
GACAGCACAGCTAGACAACAAGGCCGTCTTCCCTACTGCCACGGCAGACAGTCAGTCACATTAC
CCAGCTCTCTGGGGCTCTCTGGGGCTTCACTGCAACACCAGGAAGGACTACTTACTAACCTAGA
GAGAAATGCATGATCCTCGACACCAGACCTCCCAGACAGCAGGCCCTCTGAAAAGTTCAGTTAG
CAAGCCCCATCAACATACCCACCGCTGGAAGCTGAGGATGGTAACTTCCTCCCAAGGTTTTGTG
AGTTTGCAGTACCTGGCAAGTGGTGGAGCCTCCTCTCTGGAATCTTACCTCACTGGTCTGGGGA
AAGAAAAGGACCCTTGCACTTCTCACACCCACGCCCAGAACCCCTAGTCCCCATGTGGCTGGCA
GTCTCTTGGTGTGAGGATGCTGTTTTCTACGAACAGTCTAGCTGGCACCACCATAGCCAAGTAA
AATGGAGCACATGCAAATCCCTCAGGAGGTGACTGCATGTAGGCCAGGGCAGAGGGTCAGGCTA
GTGTGGCATCAGACGGTCCCCAAACATGTAGTGGGTCAGATGTTTCCCTGACCCCATAGTAGTC
TGAAAACCCTGGACACAGTGTCCTGTTCAAAGGGCCAAGATGCCAGAGTGATGTCCAGATGAAG
AGCCAAGCCAAGTCCAGGCTTAGCAGCCTAGCAACACCTAGGAAACAACGTAAGCGTCCACCTT
CACAGGACCGCCCAGCGCCATGGGGACGCTTCATTAGAAACTAGTCACTTCGCCCATGTGCTCA
GGACTGGACAGAAAAGCTCAGAGTGGCACGTCCATATAGGTCCTGGGCAGTAGAGGACCAGAAC
TGCCATCAGAGTCCCCAAAGGTAGGATCCTCAGCAAGAAAGCACTTGAGAAAGCATTTCTAATA
GCTCTAACATACCTTGGGCTTTGTAAATGGAAATTGGGTCACTCTGCCCTACTGGTCCTCACTG
TCCTAGAACAGAACCTGAGCACCCTTGGGAATAGTCCTAGGCCCACCCATGTAGTTCCTCAGCA
GCACCCAGAGCTATGTGAGACAAGTGGTCTTCGTCGTGTCTCCCCTTACCTCCAGTTTCCTCAC
ACAGCACCTTTCTCCAGTCAGTGTTGTTTAACTTTGAATAGAAGCCCTCCCTCTAGATGACATC
TGTCATCTAGCAAGGAAAGGGTAGTAACAATTAGATCACAAGGACTTATTGTCTCCATATTGTC
AGCTTAAACTGTCTTTGGAATTTGTTGTGGCACCTGTGTTCCCTCTCAGCATAGAAACTGATTG
AGTCCAACTTTGCTGCACAGAATGGATGTGCATTTTCCTCAGTTCGATTTGAACACACAGCTGG
AGTGTTTGTCTGTGCTGCATGTTTTATGCGATACCAATTAGCTACTACTAATTATGGGTAAGTA
GAATCCAGTGTCTGTGAATAAAAACAAAAACTGCACAGCATGCAAACCAAGACCAGGGCCATGT
GCTAATAGGTGACAGGCACACAAGAGATGGGGGTAGGTTCTCACAGGGGATAACACCCAGGAGG
CGATATTTTTTTTTCTCTATAGGGGGCACTCAGGAGACAGAGACATACTCTGTTGTGAGCTGAT
CCAGGAGACAAGAAAGATTCAGTCTATCAGGGGAAGACACTCAGGAGACAGAGACAGGTTCTCT
TGAGGTATGACAGACAAAAGTAAGGACAGATTTGGTCAGAGGCGACACTCAGGGACACGGATGG
AGTGACAGAGTCATGTTTGGTTGTGCATGACACTCGGCATGTTCTGTCAGAGTAATACTTGGAT
ATATTCTATTGGGGGTGATACCCATGGACATGGTCTGTAGGGGGTGATATACAGGGACACATTC
TGTTGGAGGTGACATTCAGGAGAAAGGGACAAATTTCAGGGAAGAGCCATTCAGATGGTGTCTT
AAGTGTCAGGGAATGATGGTAGGTAGGTTAGAGGCTGTCTGAAACATTGACTCTAGTAGAACCC
CTATTTATTTCTATTTAATGCTATGAGCAACTAGTTAGTGGAAATACTTTACCAAAACAAGAGT
TCAAATTCCGTATTTAAATATTGTGGAAAGATCTATATTTATACTGGAGTATTTTTACACCTTT
CAGTATCCTATCTTACTTTGGGGCATAGGGACATTAAGAGATGGAGACAGTTTTGAAATAGGTT
GCACTACAGATCTGCCACCTCCCTTAGTCTGTCCCAGGGAGTTGACAGGTGGCTGCCCTGAGCC
AAGACTCAACCTTCCCCCTCCCAGAGGCCCTGGGCTGCCTCAGCTGCCTGCTTTAATGAATAGT
TTTACTGGCACACAGCTGTCCCCATGTGTTTACATACTGTTCTGTAGCTGCTTTGGTATTAGAA
CTGGCTGGGAGGATTGGGACAGATGCCATGGCACAGACACGTGGTATTTGCCACCTGTCCTTTT
CCAGGGAAAACTGCCTGCCTGTCTGCAGCCCCCGACCCCCTGTAGACTCGTCTACTACCCGGCT
ACAACATGGGCACATGGGGGAAGCCCTGCCAATTAAGAATGGCAAGAGTAACAATTTAGCTGTA
CTGTGAAGACATCAGTAGACAGAATAGCCTTCCAACATTGAGCCAAACAGCTCTTCCTCACCAA
CATACTACTGACCATTTTGAACTTTACAGTTTAGGGGTGTGGCCATCTTGGGATGATTAAATTA
TCTCTTCCTTTAGACTTCTTAACTAAACCAAGCCAAACAACAAAGGAAGCCTGTACAACTTAAA
CTTGAAAGGAATAATATGCTATTACTACTAGTTTGTACTAAGTTTTTTTTTTCAAGAAAGGGAG
TTAAGTTTATATATATGTGATATATATTTTTACACTATTTTATTAATGTTAGGGAGTATGGAGT
TTATCACTTTATCAGTGTGATGGGTAATGTTGATGTCACAGGTGTCCTGACTCAAAGACACTTA
TGCTGACATCTAAACCACGCTTGCTCAGAATGTCAGGTCAGGATGGCCCTGCTGTCCCTCCTAT
AGTGCAAGGCATCCAGTCACCTAGTTGGACATATGGCCTGGCTCATATTGCTTTTGTGAACAGC
TTGTGTCTGTCAACATTTCGTTCATTGTGTTTGCTGTTATTAACATTGTGTGTCAAGTTGGTAA
AGTGATGAATAAAGGTTTTAAAATATGGA

hide sequence

RefSeq Acc Id:

XM_006227794 ⟹ XP_006227856

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	29,257,111 - 29,281,039 (-)	NCBI
Rnor_6.0	1	31,866,755 - 31,890,696 (-)	NCBI
Rnor_5.0	1	33,291,317 - 33,315,340 (-)	NCBI

Sequence:

show sequence

TAGCGCCGGGCGCTGTCCGTGGTCCGAGGCGCGGCTCTGGGGCCAAGGCTCGGGACGCCTCCGG
TCTGTGAGGCTGGCCACCTGCCACTCTCTGCAGTGGCTAGATCAGCTCCGGCTGCTGAAGCATT
GCTTCCTCAGAGACCTCGGCAGGGGTGTCAAAAAGGCTATGCGTGTACACTGAGCCAGGCGCAT
TGCGTCGGAACTTAATACGGCGGACCGAAAGCACCCCACGGCTCCCACCGACCCAGCAACATGG
CTGACAGCAAGGCCAAGCCCACCAAAGCTGCCAACAAGACACCACCCAAGTCCCCAGGAGACCC
AGCCAAGGCTGCTAAGAGGTTGTCGCTGGAGTCAGAGGGGGCCAATGAGGGTGCAGCTGCAGCC
CCTGAGCTCAGTGCCCTGGAGGAGGCCTTCCGGCGGTTTGCAGTACACGGGGACACCAGGGCCA
CAGGAAAGGAGATGCACGGCAAGAACTGGTCAAAACTGTGCAAGGACTGCCACGTGATCGACGG
GAAGAACGTGACCGTCACCGACGTGGACATCGTCTTCAGCAAGATCAAAGGGAAGTCCTGCAGG
ACCATCACCTTTGAGCAGTTCCAGGAGGCACTGGAGGAACTGGCCAAGAAGCGGTTCAAGGATA
AGAGCAGCGAGGAAGCCGTGCGTGAGGTGCACCGACTCATCGAGGGCCGAGCACCAGTCATCTC
TGGCGTCACGAAAGCTGTGTCCTCACCCACAGTGTCACGGCTCACGGATACCAGCAAGTTCACA
GGCTCCCACAAAGAGCGCTTCGACCAATCAGGAAAGGGCAAGGGCAAAGCTGGCCGCGTGGACC
TGGTGGATGAGTCAGGCTACGTGCCTGGTTACAAGCATGCGGGCACCTATGACCAGAAGGTGCA
GGGGGGCAAGTAGCCTTACGGGCTGGAGCTCCGGACACTACAGGTGGCAGGCACAGGACTTACA
CCCATTGCACTTCATTACATTCCTATGTTAACTGGGCAGAACTCAGAATGCACCTCCACTAGGC
GATGGTGGGGGCGATGCCCAGGCCTCCTCCTGCTGGGTGCTTCGACACTTCTCCCTCAGACCCC
AGGTTTGGGCCGTGATTCATTGTCCTGTCCTAACATACCTGCCCTGTCCACAGCTGGGAAGTGG
ACTGCTCTTTCCAAACTGTCTCCCAGGATCATACCACACTGGCCACTCGAGCTGCACGTAAAAG
GGGTGTTCTGGGTACTGGCAGAAGTAAGGGTGAGCAGATGTGAGAACTCACGCTGGCTTTATCT
AGGCACTTGTAGGGCGGCAGGAGCTAAGGAACTAACCAACCGGATAGAGTAATCCTAAACAGGC
CGCTTCATCCTTTATGACCACAGCACACAACTGAGGCTACTCGGTGGTGTGCCAATGTGTGTGT
GAACAATTCACATCAGTACACATGCATGTGCACACGCGCGAGCACACACACACACACACACACA
CACACACACACACACACACACACACAGCTTCACCAACCAAGTCTGTGCTGAGAGTGGCCAAGAG
AAAAATGGAAGCTCCCCGGTGACCAGAGGAGTAATATGAAGCTGGAAGTTTCTTCAGTGTTGTT
CTAAGAAATGACAAGGCTATGTGCTTGGTCTCAAGAGTGATCCAGGGGGATCCGGGACATCAAG
CTGCCATGCCCCATCACCAGGTTGGGACACACATGAGGCTGAATCACTTCATCCAGACCAGGCC
TGACAGTTATCCCACCAATGGGACAGAAGCTCTTGCCAGCGCGAGTTATGCTGTGTTTTGCTCA
AAACCATGTGTCTTCAGCTCAGTGGAATCTTCTCTGGGTTCAGATTTCCTAACTTTGATCACAA
GTGCAAGTGCAGGGCACTGGACACCAGAACCAGACCCAAGAAAGATTTTCAGCATCAGCTAAGG
CTTCTTTTCCTGCCGCAAGAGAGAAGTCAGGACTGAGCTCTTCCACGAATGAGGGTGCCGCTTA
GCCAGGCCCACAGACCTGTACTATTCTCAAAAGAGCAGCACTTGTTCCTTTGCATTAACACAGC
CCTAGCCTTGCATGCAACTTGGTGAACTGTGTAGCCTTGTTCCTAGAAAGAGCACAGTGGCCTC
GGGATCTGCTTCCCGGAGCAGATGGCTGTTGGGGGTGGGAGTGTGTCTTACGCGGCTTGGACAG
CACAGCTAGACAACAAGGCCGTCTTCCCTACTGCCACGGCAGACAGTCAGTCACATTACCCAGC
TCTCTGGGGCTCTCTGGGGCTTCACTGCAACACCAGGAAGGACTACTTACTAACCTAGAGAGAA
ATGCATGATCCTCGACACCAGACCTCCCAGACAGCAGGCCCTCTGAAAAGTTCAGTTAGCAAGC
CCCATCAACATACCCACCGCTGGAAGCTGAGGATGGTAACTTCCTCCCAAGGTTTTGTGAGTTT
GCAGTACCTGGCAAGTGGTGGAGCCTCCTCTCTGGAATCTTACCTCACTGGTCTGGGGAAAGAA
AAGGACCCTTGCACTTCTCACACCCACGCCCAGAACCCCTAGTCCCCATGTGGCTGGCAGTCTC
TTGGTGTGAGGATGCTGTTTTCTACGAACAGTCTAGCTGGCACCACCATAGCCAAGTAAAATGG
AGCACATGCAAATCCCTCAGGAGGTGACTGCATGTAGGCCAGGGCAGAGGGTCAGGCTAGTGTG
GCATCAGACGGTCCCCAAACATGTAGTGGGTCAGATGTTTCCCTGACCCCATAGTAGTCTGAAA
ACCCTGGACACAGTGTCCTGTTCAAAGGGCCAAGATGCCAGAGTGATGTCCAGATGAAGAGCCA
AGCCAAGTCCAGGCTTAGCAGCCTAGCAACACCTAGGAAACAACGTAAGCGTCCACCTTCACAG
GACCGCCCAGCGCCATGGGGACGCTTCATTAGAAACTAGTCACTTCGCCCATGTGCTCAGGACT
GGACAGAAAAGCTCAGAGTGGCACGTCCATATAGGTCCTGGGCAGTAGAGGACCAGAACTGCCA
TCAGAGTCCCCAAAGGTAGGATCCTCAGCAAGAAAGCACTTGAGAAAGCATTTCTAATAGCTCT
AACATACCTTGGGCTTTGTAAATGGAAATTGGGTCACTCTGCCCTACTGGTCCTCACTGTCCTA
GAACAGAACCTGAGCACCCTTGGGAATAGTCCTAGGCCCACCCATGTAGTTCCTCAGCAGCACC
CAGAGCTATGTGAGACAAGTGGTCTTCGTCGTGTCTCCCCTTACCTCCAGTTTCCTCACACAGC
ACCTTTCTCCAGTCAGTGTTGTTTAACTTTGAATAGAAGCCCTCCCTCTAGATGACATCTGTCA
TCTAGCAAGGAAAGGGTAGTAACAATTAGATCACAAGGACTTATTGTCTCCATATTGTCAGCTT
AAACTGTCTTTGGAATTTGTTGTGGCACCTGTGTTCCCTCTCAGCATAGAAACTGATTGAGTCC
AACTTTGCTGCACAGAATGGATGTGCATTTTCCTCAGTTCGATTTGAACACACAGCTGGAGTGT
TTGTCTGTGCTGCATGTTTTATGCGATACCAATTAGCTACTACTAATTATGGGTAAGTAGAATC
CAGTGTCTGTGAATAAAAACAAAAACTGCACAGCATGCAAACCAAGACCAGGGCCATGTGCTAA
TAGGTGACAGGCACACAAGAGATGGGGGTAGGTTCTCACAGGGGATAACACCCAGGAGGCGATA
TTTTTTTTTCTCTATAGGGGGCACTCAGGAGACAGAGACATACTCTGTTGTGAGCTGATCCAGG
AGACAAGAAAGATTCAGTCTATCAGGGGAAGACACTCAGGAGACAGAGACAGGTTCTCTTGAGG
TATGACAGACAAAAGTAAGGACAGATTTGGTCAGAGGCGACACTCAGGGACACGGATGGAGTGA
CAGAGTCATGTTTGGTTGTGCATGACACTCGGCATGTTCTGTCAGAGTAATACTTGGATATATT
CTATTGGGGGTGATACCCATGGACATGGTCTGTAGGGGGTGATATACAGGGACACATTCTGTTG
GAGGTGACATTCAGGAGAAAGGGACAAATTTCAGGGAAGAGCCATTCAGATGGTGTCTTAAGTG
TCAGGGAATGATGGTAGGTAGGTTAGAGGCTGTCTGAAACATTGACTCTAGTAGAACCCCTATT
TATTTCTATTTAATGCTATGAGCAACTAGTTAGTGGAAATACTTTACCAAAACAAGAGTTCAAA
TTCCGTATTTAAATATTGTGGAAAGATCTATATTTATACTGGAGTATTTTTACACCTTTCAGTA
TCCTATCTTACTTTGGGGCATAGGGACATTAAGAGATGGAGACAGTTTTGAAATAGGTTGCACT
ACAGATCTGCCACCTCCCTTAGTCTGTCCCAGGGAGTTGACAGGTGGCTGCCCTGAGCCAAGAC
TCAACCTTCCCCCTCCCAGAGGCCCTGGGCTGCCTCAGCTGCCTGCTTTAATGAATAGTTTTAC
TGGCACACAGCTGTCCCCATGTGTTTACATACTGTTCTGTAGCTGCTTTGGTATTAGAACTGGC
TGGGAGGATTGGGACAGATGCCATGGCACAGACACGTGGTATTTGCCACCTGTCCTTTTCCAGG
GAAAACTGCCTGCCTGTCTGCAGCCCCCGACCCCCTGTAGACTCGTCTACTACCCGGCTACAAC
ATGGGCACATGGGGGAAGCCCTGCCAATTAAGAATGGCAAGAGTAACAATTTAGCTGTACTGTG
AAGACATCAGTAGACAGAATAGCCTTCCAACATTGAGCCAAACAGCTCTTCCTCACCAACATAC
TACTGACCATTTTGAACTTTACAGTTTAGGGGTGTGGCCATCTTGGGATGATTAAATTATCTCT
TCCTTTAGACTTCTTAACTAAACCAAGCCAAACAACAAAGGAAGCCTGTACAACTTAAACTTGA
AAGGAATAATATGCTATTACTACTAGTTTGTACTAAGTTTTTTTTTTCAAGAAAGGGAGTTAAG
TTTATATATATGTGATATATATTTTTACACTATTTTATTAATGTTAGGGAGTATGGAGTTTATC
ACTTTATCAGTGTGATGGGTAATGTTGATGTCACAGGTGTCCTGACTCAAAGACACTTATGCTG
ACATCTAAACCACGCTTGCTCAGAATGTCAGGTCAGGATGGCCCTGCTGTCCCTCCTATAGTGC
AAGGCATCCAGTCACCTAGTTGGACATATGGCCTGGCTCATATTGCTTTTGTGAACAGCTTGTG
TCTGTCAACATTTCGTTCATTGTGTTTGCTGTTATTAACATTGTGTGTCAAGTTGGTAAAGTGA
TGAATAAAGGTTTTAAAATATGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001101931	(Get FASTA)	NCBI Sequence Viewer
	XP_006227855	(Get FASTA)	NCBI Sequence Viewer
	XP_006227856	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	D3ZQL7	(Get FASTA)	NCBI Sequence Viewer
	EDL87672	(Get FASTA)	NCBI Sequence Viewer
	EDL87673	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101931 ⟸ NM_001108461

- UniProtKB:

A0A0G2K2D6 (UniProtKB/Swiss-Prot), D3ZQL7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MADSKAKPTKAANKTPPKSPGDPAKAAKRLSLESEGANEGAAAAPELSALEEAFRRFAVHGDTR
ATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFK
DKSSEEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKERFDQSGKGKGKAGRV
DLVDESGYVPGYKHAGTYDQKVQGGK

hide sequence

RefSeq Acc Id:	XP_006227856 ⟸ XM_006227794
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2D6 (UniProtKB/Swiss-Prot), D3ZQL7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADSKAKPTKAANKTPPKSPGDPAKAAKRLSLESEGANEGAAAAPELSALEEAFRRFAVHGDTR ATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFK DKSSEEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKERFDQSGKGKGKAGRV DLVDESGYVPGYKHAGTYDQKVQGGK hide sequence

RefSeq Acc Id:	XP_006227855 ⟸ XM_006227793
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K2D6 (UniProtKB/Swiss-Prot), D3ZQL7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MADSKAKPTKAANKTPPKSPGDPAKAAKRLSLESEGANEGAAAAPELSALEEAFRRFAVHGDTR ATGKEMHGKNWSKLCKDCHVIDGKNVTVTDVDIVFSKIKGKSCRTITFEQFQEALEELAKKRFK DKSSEEAVREVHRLIEGRAPVISGVTKAVSSPTVSRLTDTSKFTGSHKERFDQSGKGKGKAGRV DLVDESGYVPGYKHAGTYDQKVQGGK hide sequence

RefSeq Acc Id:

ENSRNOP00000072201 ⟸ ENSRNOT00000081225

RefSeq Acc Id:

ENSRNOP00000034617 ⟸ ENSRNOT00000039166

RefSeq Acc Id:

ENSRNOP00000085473 ⟸ ENSRNOT00000115773

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQL7-F1-model_v2	AlphaFold	D3ZQL7	1-218	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689561

Promoter ID:

EPDNEW_R85

Type:

single initiation site

Name:

Tppp_1

Description:

tubulin polymerization promoting protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	31,890,737 - 31,890,797	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310121	AgrOrtholog
BioCyc Gene	G2FUF-61937	BioCyc
Ensembl Genes	ENSRNOG00000028261	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000034617	ENTREZGENE
	ENSRNOP00000034617.4	UniProtKB/Swiss-Prot
	ENSRNOP00000072201.2	UniProtKB/TrEMBL
	ENSRNOP00000085473.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000039166	ENTREZGENE
	ENSRNOT00000039166.7	UniProtKB/Swiss-Prot
	ENSRNOT00000081225.2	UniProtKB/TrEMBL
	ENSRNOT00000115773.1	UniProtKB/TrEMBL
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P25-alpha	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:361466	UniProtKB/Swiss-Prot
NCBI Gene	361466	ENTREZGENE
PANTHER	PTHR12932	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR12932:SF18	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	p25-alpha	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tppp	PhenoGen
Superfamily-SCOP	SSF47473	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K2D6	ENTREZGENE
	A0A5H1ZRV3_RAT	UniProtKB/TrEMBL
	A0A8I6A1G2_RAT	UniProtKB/TrEMBL
	D3ZQL7	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A0A0G2K2D6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Tppp	tubulin polymerization promoting protein	RGD1310121_predicted	similar to 25 kDa brain-specific protein (p25-alpha) (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1310121_predicted	similar to 25 kDa brain-specific protein (p25-alpha) (predicted)	LOC361466_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361466_predicted	similar to 25 kDa brain-specific protein (p25-alpha) (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

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Imported Disease Annotations - ClinVar