Glom22 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Glom22 (Glomerulus QTL 22) Rattus norvegicus

Symbol: Glom22
Name: Glomerulus QTL 22
RGD ID: 2317755
Also known as: Crescentic glomerulonephritis QTL 3; Crgn3
Trait: urine protein amount   (VT:0005160)    
Measurement Type: urine protein level   (CMO:0000591)    
LOD Score: 3.8
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2111,481,482 - 32,355,910RGD_MAPPER_PIPELINE
Rnor_6.0111,314,658 - 34,993,348RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0112,920,275 - 36,395,486RGDRnor5.0
RGSC_v3.411 - 11,860,328RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: LEW/NHsd WKY/NCrl 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
LEW/NHsd  (IEA)
WKY/NCrl  (IEA)

References

References - curated
1. Aitman TJ, etal., Nature. 2006 Feb 16;439(7078):851-5.
2. Personal communication between Dr. Aitman and the RGD curators.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
62024Rps12ribosomal protein S1212275821422760370Rat
619706Ptprkprotein tyrosine phosphatase, receptor type, K11744505218058266Rat
2150Arg1arginase 112152542121537872Rat
70494Terttelomerase reverse transcriptase13225087632275330Rat
69352Slc6a18solute carrier family 6 member 1813222167932235599Rat
621016Pde7bphosphodiesterase 7B11588984516203909Rat
631382Taar4trace amine-associated receptor 412255878722559830Rat
631385Taar7htrace amine-associated receptor 7h12245122522452301Rat
631386Taar8btrace amine-associated receptor 8b12356535023568888Rat
631388Taar7gtrace amine-associated receptor 7g12246509222466168Rat
631391Taar8atrace amine associated receptor 8A12236455122365675Rat
631395Taar7dtrace-amine-associated receptor 7d12248705522488131Rat
620523Tcf21transcription factor 2112390671723909576Rat
621621Taar1trace-amine-associated receptor 112259547722596475Rat
631390Taar8ctrace amine-associated receptor 8c12233204722333121Rat
631392Taar7btrace amine-associated receptor 7b12251856022519636Rat
631387Taar7atrace amine-associated receptor 7a12252865922529735Rat
631394Taar7etrace-amine-associated receptor 7e12247944622480522Rat
628825Enpp1ectonucleotide pyrophosphatase/phosphodiesterase 112174820121813205Rat
631383Taar9trace amine-associated receptor 912231935322320369Rat
708511Enpp3ectonucleotide pyrophosphatase/phosphodiesterase 312161314821684483Rat
621405Hey2hes-related family bHLH transcription factor with YRPW motif 212919117029201257Rat
620112Cited2Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 211282336312825806Rat
621557Sdhasuccinate dehydrogenase complex flavoprotein subunit A13154563131570601Rat
621603Hint3histidine triad nucleotide binding protein 312941342529423288Rat
631393Taar7f-pstrace amine-associated receptor 7f, pseudogene12247340822474296Rat
631384Taar6trace amine-associated receptor 612253619922537236Rat
727798Trmt11tRNA methyltransferase 11 homolog12943210929576079Rat
621392Ccn2cellular communication network factor 212185165721854773Rat
619856Trdntriadin12540339025787664Rat
620570Ifngr1interferon gamma receptor 111506238015080815Rat
1304818Hecahdc homolog, cell cycle regulator11303690913050644Rat
1303071Akap7A-kinase anchoring protein 712112921321263850Rat
3720Slc9a3solute carrier family 9 member A313173165231777144Rat
3715Slc6a3solute carrier family 6 member 313232301132363983Rat
621790Exoc3exocyst complex component 313170095331731726Rat
1306836Rnf217ring finger protein 21712830196028391582Rat
619747Stx7syntaxin 712224165522281850Rat
1307525Kiaa0408LKiaa0408-like13104014231055453Rat
1306375Mrpl36mitochondrial ribosomal protein L3613126137031264715Rat
1307131Reps1RALBP1 associated Eps domain containing 111326204913298347Rat
1307896Clptm1lCLPTM1-like13228120732297196Rat
1307979Txlnbtaxilin beta11291578112961680Rat
1305053Arhgap18Rho GTPase activating protein 1811922711519463139Rat
1307359Brd9bromodomain containing 913193961231968120Rat
3668Sgk1serum/glucocorticoid regulated kinase 112418545124302309Rat
1308509Hbs1lHBS1-like translational GTPase11681917016896234Rat
1308516Trip13thyroid hormone receptor interactor 1313196798032012923Rat
1306565Map3k5mitogen-activated protein kinase kinase kinase 511541260315613752Rat
1307335Il20rainterleukin 20 receptor subunit alpha11518032815222785Rat
1310121Tppptubulin polymerization promoting protein13186675531890778Rat
1306801Clvs2clavesin 212517308925217625Rat
1305997Olig3oligodendrocyte transcription factor 311479776614799835Rat
1310175Slc2a12solute carrier family 2 member 1212400362524056373Rat
1333163Olr1856-psolfactory receptor pseudogene 185612905581329056343Rat
1310326Ccdc28acoiled-coil domain containing 28A11338415313395643Rat
1359185Taar5trace amine-associated receptor 512254766222548675Rat
1333280Olr1813-psolfactory receptor pseudogene 181312655130226551781Rat
1311459Nkd2NKD inhibitor of WNT signaling pathway 213205439032085416Rat
1309428Slc35d3solute carrier family 35, member D311529852615301998Rat
1306482Rnf146ring finger protein 14613085692330873814Rat
1308866Map7microtubule-associated protein 711562066515748203Rat
1309903Arfgef3ARFGEF family member 311383786113918277Rat
1309309Irx4iroquois homeobox 413263477432645151Rat
1308483Pex7peroxisomal biogenesis factor 711531176815374702Rat
1306962Slc18b1solute carrier family 18 member B112270598022748571Rat
1307671Med23mediator complex subunit 2312153976521587675Rat
1307562Hddc2HD domain containing 212856744728600116Rat
1311553Hebp2heme binding protein 211371315213719970Rat
1310075Vnn1vanin 112261483222625134Rat
1309834Irx2iroquois homeobox 213327038833275868Rat
1309060Irx1iroquois homeobox 113391091233916741Rat
1307099Eya4EYA transcriptional coactivator and phosphatase 412323761723611580Rat
1310294Perpp53 apoptosis effector related to PMP2211422439214236838Rat
1305474L3mbtl3L3MBTL histone methyl-lysine binding protein 311999877620097298Rat
1308889Lama2laminin subunit alpha 211849126419143486Rat
1310033Moxd1monooxygenase, DBH-like 112212449822206565Rat
1359672Slc12a7solute carrier family 12 member 713208675532167950Rat
1311239Pdcd6programmed cell death 613157618331591852Rat
1311240Taar2trace amine associated receptor 212257802522581994Rat
1303040Ahi1Abelson helper integration site 111647812716601769Rat
1566426Ncoa7nuclear receptor coactivator 712922572729386642Rat
1565215Rpl26-ps2ribosomal protein L26, pseudogene 213152760531528088Rat
1560890LOC310926hypothetical protein LOC31092611190774611914539Rat
1560020MybMYB proto-oncogene, transcription factor11665817816690135Rat
1560849Themisthymocyte selection associated11715297317378225Rat
1564281Zdhhc11zinc finger, DHHC-type containing 1113190604931936603Rat
1563246Rspo3R-spondin 313068164830768038Rat
1308124Nhsl1NHS-like 111347269413705364Rat
1303169Il22ra2interleukin 22 receptor subunit alpha 211508413615107423Rat
1311933RGD1311933similar to RIKEN cDNA 2310057J1813140957931425669Rat
1359258Taar7ctrace amine-associated receptor 7C12250709422508170Rat
1559857Ahrraryl-hydrocarbon receptor repressor13160329731698329Rat
1309704Bclaf1BCL2-associated transcription factor 111579975315828838Rat
1564024Tmem200atransmembrane protein 200A12033067020413921Rat
1359654Echdc1ethylmalonyl-CoA decarboxylase 113087441030921117Rat
1559962RGD1559962similar to High mobility group protein 2 (HMG-2)12041673520417959Rat
1560609Vnn3vanin 312264911422661376Rat
1560303RGD1560303similar to hypothetical protein 4933423E1711411226014118759Rat
1311599Lpcat1lysophosphatidylcholine acyltransferase 113237943132429917Rat
735106Ccdc127coiled-coil domain containing 12713153808831545573Rat
1359566Taar3trace amine-associated receptor 312256927522570303Rat
1586689LOC686007similar to calmodulin 112072950820730428Rat
1584830LOC679711similar to RIKEN cDNA 5031410I0612485455525026307Rat
1587222LOC501467similar to spermatogenesis associated glutamate (E)-rich protein 4d12482536224905874Rat
1564978Lrrc14bleucine rich repeat containing 14B13153114331535314Rat
1561988MccMCC regulator of WNT signaling pathway11200666312128849Rat
1566336Cep72centrosomal protein 7213183497731864938Rat
1563977Epb41l2erythrocyte membrane protein band 4.1-like 212088182021067713Rat
1594328Slc6a19solute carrier family 6 member 1913219986932218628Rat
1589982LOC688396similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Liver copper-binding protein) (CUBP)12137003321371379Rat
1590841LOC364658similar to ribosomal protein L10a13381643933819293Rat
1590218Aldh8a1aldehyde dehydrogenase 8 family, member A111691004316929465Rat
1589061LOC685825hypothetical protein LOC68582511818187418182759Rat
1586034LOC498996similar to DnaJ (Hsp40) homolog, subfamily A, member 412970485929705935Rat
1586664Smlr1small leucine-rich protein 112085618720877716Rat
1587834Samd3sterile alpha motif domain containing 312011154820155960Rat
1586102LOC365078similar to High mobility group protein 1-like 10 (HMG-1L10)13143643431437224Rat
1586104LOC365076similar to histone deacetylase 113041120230411921Rat
1586105LOC365074similar to heterogeneous nuclear ribonucleoprotein A312912936029130445Rat
1586106LOC365073similar to SEC24 related gene family, member C12899872729001296Rat
1586108LOC365071similar to zinc finger, BED domain containing 412535502425357680Rat
1586110LOC365062similar to RuvB-like protein 111833772018340109Rat
1586112LOC365055similar to CG30392-PA11484849914854643Rat
1586113LOC365052similar to ribosomal protein L10a11449154214492247Rat
1586115LOC365050hypothetical gene supported by NM_17576111300341713009119Rat
1589918LOC689660similar to Bcl-2-like 13 protein (Mil1 protein) (Bcl-rambo)13150457131510472Rat
1583256AbraclABRA C-terminal like11316558313175773Rat
1584802LOC679739NADH dehydrogenase (ubiquinone) Fe-S protein 613257320432581785Rat
1587386LOC292178hypothetical LOC29217812507729525078215Rat
1589275Tnfaip3TNF alpha induced protein 311440110314416369Rat
1597456Tbpl1TATA-box binding protein like 112397715424002512Rat
1593465Cenpwcentromere protein W12991544329920598Rat
1593146LOC502223similar to mitochondrial ribosomal protein L3012211762922118192Rat
1594836LOC689216similar to 60S ribosomal protein L712792403527925714Rat
1594825LOC689227similar to Ferritin light chain 2 (Ferritin L subunit 2) (Ferritin subunit LG)12794649227947648Rat
1594796Tpd52l1TPD52 like 112845494928578736Rat
1594397Taar7i-pstrace amine associated receptor 7i, pseudogene12243044022431506Rat
1598314LOC361456similar to ribosomal protein S1011996567419966222Rat
2319083Ect2l2epithelial cell transforming 2-like 211177407511804117Rat
2321467LOC100360791tumor protein, translationally-controlled 112011590320116667Rat
2322291LOC100360362hypothetical protein LOC10036036211295234812953988Rat
2321841LOC100364016cyclin B2-like12114536321146879Rat
6494290LOC100911211zinc finger protein 32-like11743042517431867Rat
6494479LOC100911237zinc finger protein 420-like13149404331519034Rat
6485924LOC10091270340S ribosomal protein S2-like11478690414787744Rat
6493199LOC100911400bleomycin hydrolase-like11756500717569790Rat
6494892Mtfr2mitochondrial fission regulator 211583477915850424Rat
6499508LOC100910237uncharacterized LOC10091023712275730022758028Rat
6499755LOC100910174trace amine-associated receptor 8a-like12236455922365675Rat
6496843LOC100910701uncharacterized LOC10091070113426741034271773Rat
7499806LOC102547350uncharacterized LOC10254735011554510915560684Rat
7527376LOC10255071660S ribosomal protein L13-like11507337015074284Rat
7541425LOC102552668uncharacterized LOC10255266812088305720888825Rat
7505831LOC102550206uncharacterized LOC10255020611450798414512889Rat
7532311LOC102553363uncharacterized LOC10255336312169532921704839Rat
7501335LOC102548197heterogeneous nuclear ribonucleoprotein A3-like13060959030610701Rat
7511531LOC102552728uncharacterized LOC10255272812111967621130808Rat
7534471LOC10255419960S ribosomal protein L7a-like13022774130263735Rat
7650092LOC102553526uncharacterized LOC10255352612197956021984557Rat
7636033LOC102554862ADP-ribosylation factor 1-like13102268131025064Rat
7636934LOC10255402360S ribosomal protein L29-like12256226122579766Rat
7653582LOC102546491uncharacterized LOC10254649111243077812485711Rat
7624072LOC102553457uncharacterized LOC10255345712198483522003925Rat
7628562LOC102548924uncharacterized LOC10254892413229973032331632Rat
7630698LOC102555830uncharacterized LOC10255583012407161724074552Rat
7619285LOC102551338uncharacterized LOC10255133811582750015833146Rat
7572118LOC102552760uncharacterized LOC10255276011755337017558606Rat
7620758LOC102546604uncharacterized LOC10254660411258588912634299Rat
7546851LOC102546831uncharacterized LOC10254683111268077912718163Rat
7600835LOC102554594uncharacterized LOC10255459411290998512912123Rat
7579399LOC102554376uncharacterized LOC10255437612323393023235209Rat
7601783LOC10254760460S ribosomal protein L27a-like11538952115389952Rat
7603956LOC10255738060S ribosomal protein L29-like11381078513811284Rat
7583283LOC102546868uncharacterized LOC10254686812473726524740080Rat
7605452LOC102547411uncharacterized LOC10254741111540629315410996Rat
7605586LOC102547026uncharacterized LOC10254702612413228324153769Rat
7565673LOC102553223uncharacterized LOC10255322311197428811975321Rat
7685865LOC102552525uncharacterized LOC10255252511169342011701431Rat
7689058LOC102549113uncharacterized LOC10254911313252203332529813Rat
7683149LOC102548015uncharacterized LOC10254801511204623012078805Rat
7683222LOC102548594uncharacterized LOC10254859413167015731672084Rat
7737211LOC10255153060S ribosomal protein L7-like12790753227914923Rat
7737742LOC102549004glyceraldehyde-3-phosphate dehydrogenase-like13247476932475816Rat
7737825LOC102555889uncharacterized LOC10255588912407471524076751Rat
7714963LOC10255352540S ribosomal protein S2-like11638708316388380Rat
7740967Nkain2sodium/potassium transporting ATPase interacting 212747325128161521Rat
7697240LOC102551251putative methyl-CpG-binding domain protein 3-like 5-like11572804915731300Rat
7669820LOC102553290collagen alpha-1(III) chain-like11190526911906764Rat
7744936LOC102552380protein AMN1 homolog11725211217253209Rat
7745301LOC102552962uncharacterized LOC10255296212139318721398035Rat
7672416LOC102547713uncharacterized LOC10254771312485713524860683Rat
7701141LOC102550647uncharacterized LOC10255064711498146514991173Rat
7746808LOC102555956zinc finger protein 120-like13147733531485168Rat
7722004LOC102549278zinc finger CCCH-type antiviral protein 1-like12497263824984092Rat
7676044LOC102549339uncharacterized LOC10254933911344926813463964Rat
7678966LOC102555465uncharacterized LOC10255546512378164723800356Rat
7709341LOC102549233uncharacterized LOC10254923311339571813411828Rat
7681875LOC102553527uncharacterized LOC10255352713371503133724596Rat
9138383LOC103690948uncharacterized LOC10369094813472930234734954Rat
9078009LOC103690945uncharacterized LOC10369094513019543930197145Rat
9078384LOC103690946activated RNA polymerase II transcriptional coactivator p15 pseudogene13224367532244759Rat
9075724LOC103690928U6 snRNA-associated Sm-like protein LSm5 pseudogene11929301819293664Rat
9145514LOC103690934uncharacterized LOC10369093412296315722975303Rat
9190319LOC103690927activated RNA polymerase II transcriptional coactivator p15 pseudogene11499357714998599Rat
9115889LOC103690947uncharacterized LOC10369094713327755533281870Rat
9119539LOC103690930uncharacterized LOC10369093012186665021868658Rat
9127251LOC103690939serine/arginine repetitive matrix protein 1-like11196901811970007Rat
9308929LOC103690944uncharacterized LOC10369094412825785528286915Rat
9238127LOC103690931uncharacterized LOC10369093112255454922562511Rat
9323737LOC103694986eukaryotic translation initiation factor 1 pseudogene13155291631555167Rat
9375049LOC103690932uncharacterized LOC10369093212260958522614423Rat
9282678LOC103690240zinc finger protein 120-like13147383731477135Rat
9246970Ect2lepithelial cell transforming 2 like11330191813372928Rat
9248735LOC103690929uncharacterized LOC10369092912136969221393197Rat
9294111LOC103690926uncharacterized LOC10369092611445062414455707Rat
9295720LOC103690922epithelial cell-transforming sequence 2 oncogene-like11181591311818940Rat
9257174LOC103690942solute carrier family 2, facilitated glucose transporter member 3 pseudogene12525274425254527Rat
9302186LOC103690933uncharacterized LOC10369093312279940622809673Rat
9343707LOC103690943uncharacterized LOC10369094312592894425929680Rat
9262332LOC103690925uncharacterized LOC10369092511444580314449014Rat
9465133LOC103690941cysteine protease ATG4B pseudogene11726611917269818Rat
9434880LOC10369094040S ribosomal protein S13 pseudogene11524016515240708Rat
9399872LOC103690924uncharacterized LOC10369092411336632213368963Rat
9452253LOC103690936uncharacterized LOC10369093612485223824893456Rat
9412464LOC103690177uncharacterized LOC10369017712492138224925007Rat
11368461LOC108349490uncharacterized LOC10834949011193590811937275Rat
11364909LOC108349493uncharacterized LOC10834949311277802612781656Rat
11372440LOC108349504uncharacterized LOC10834950412415823424162042Rat
11446120LOC108349507uncharacterized LOC10834950713168851631693743Rat
11465027LOC108349506protein LEG1 homolog13100223831010327Rat
11467535LOC108349491uncharacterized LOC10834949111194954611957618Rat
11468427LOC108348220zinc finger CCCH-type antiviral protein 1 pseudogene12497263824974343Rat
11474443LOC108349472uncharacterized LOC10834947211562891415635704Rat
11358632LOC108349798glyceraldehyde-3-phosphate dehydrogenase pseudogene12526277925263873Rat
11437209LOC10834945460S ribosomal protein L36a-like12216901422169377Rat
11437431LOC108349187uncharacterized LOC10834918712228198922288279Rat
11367061LOC108349729Y-linked testis-specific protein 1-like12714042427176396Rat
11437929LOC108348877uncharacterized LOC10834887712934823529353511Rat
11357155LOC108349492uncharacterized LOC10834949211273798812748945Rat
11449888LOC108348873uncharacterized LOC10834887311686134716863784Rat
11363865LOC10834900860S ribosomal protein L7a pseudogene11725057517252327Rat
11439716LOC108349499uncharacterized LOC10834949911627691416291988Rat
11365258LOC108349443uncharacterized LOC10834944312293366722944478Rat
11368884LOC108349236uncharacterized LOC10834923612430221524316606Rat
11440602LOC108348575uncharacterized LOC10834857512603045726035332Rat
11452393LOC10834972640S ribosomal protein S6 pseudogene11457893614579697Rat
11452897LOC10834983140S ribosomal protein S29 pseudogene12230637222306689Rat
11372976LOC108349444uncharacterized LOC10834944411316434413165778Rat
11432612LOC108349830uncharacterized LOC10834983012019150820193991Rat
11433012LOC108349833uncharacterized LOC10834983312590004325904918Rat
11412926LOC108349238uncharacterized LOC10834923812431280024334892Rat
11414134LOC108348899uncharacterized LOC10834889912584916525852913Rat
11416079LOC108349800uncharacterized LOC10834980012489563024907240Rat
11415566Trnae-cuc1transfer RNA glutamic acid (anticodon CUC) 112921545729215528Rat
11421463LOC108349003protein LEG1 homolog11706231817065066Rat
11423583LOC108349834endogenous retrovirus group K member 7 Pro protein-like12865906528659897Rat
11384339LOC108349500uncharacterized LOC10834950011920963319218488Rat
11385252LOC10834845660S ribosomal protein L36a-like12077378120774160Rat
11375087LOC108349508uncharacterized LOC10834950813481171734826961Rat
11386974LOC108349497uncharacterized LOC10834949711419695614202372Rat
11398775LOC10834850860S ribosomal protein L7a pseudogene13006218630062986Rat
11387570LOC108349468uncharacterized LOC10834946812446418424529138Rat
11377304LOC108349248uncharacterized LOC10834924812185455321870577Rat
11377474LOC108349727protein LEG1 homolog11695852716968049Rat
11389337LOC108349494uncharacterized LOC10834949411279020012798954Rat
11389346LOC108349717uncharacterized LOC10834971711688902016892637Rat
11390809LOC108348816uncharacterized LOC10834881613193668731939663Rat
11391991LOC108349505uncharacterized LOC10834950512823119628239287Rat
11381406LOC108349799uncharacterized LOC10834979912495697424959643Rat
11404601LOC10834876960S ribosomal protein L7a pseudogene11434491214345956Rat
11519487LOC108349437uncharacterized LOC10834943713065427230666856Rat
11501623LOC108349495endogenous retrovirus group K member 9 Pol protein-like11414620614148530Rat
11479453Soga3SOGA family member 313106624131124885Rat
11505961LOC108349503uncharacterized LOC10834950312147710221478657Rat
11508573LOC10834872660S ribosomal protein L21 pseudogene12468583324686331Rat
11496104LOC108349832endogenous retrovirus group K member 7 Pro protein-like12268674322693926Rat
11496482LOC108349728trace amine-associated receptor 8a-like12240952822411375Rat
11496872LOC10834907140S ribosomal protein S27-like12761331327613710Rat
11512214LOC108349501uncharacterized LOC10834950111958026019594540Rat
11512463LOC108349469uncharacterized LOC10834946912450552324513210Rat
11513909LOC108349502uncharacterized LOC10834950212108020921092985Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34662D1Mgh215012340642823406577Ratregion
36303D1Rat626512034156020341824Ratregion
37296D1Rat14821111647066416470874Ratregion
37364D1Rat15023811595556615955808Ratregion
35467D1Rat717311614314316143315Ratregion
37198D1Rat18622511603307816033302Ratregion
37688D1Rat19220712429749224297799Ratregion
37974D1Rat21124313366777733668017Ratregion
36568D1Rat417011131448911314658Ratregion
36590D1Rat16015513085792730858079Ratregion
36640D1Rat1416613499334834993530Ratregion
34878D1Rat313611159848311598617Ratregion
35058DXRat10614911255728612557447Ratregion
35853D1Rat912913213555632135680Ratregion
35885D1Rat814213148945431489553Ratregion
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5082603BE11984115111520415115204301Ratregion
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5085183AA79957014812970611229706259Ratregion
5088805AU04878326912418750324187770Ratregion
5088829AU04879529513364181333642107Ratregion
5081052RH14193719011574774815747937Ratregion
5090033AU04951028911869096718691253Ratregion
5090141AU04957424112653521126535451Ratregion
5090205AU04961314112918263429182774Ratregion
5090263AU04964714311401323414013376Ratregion
5089023AU04890919511638360116383795Ratregion
5080744RH14175718011383603613836215Ratregion
5084772AI17200614312540360225403744Ratregion
5504532PMC27918P136413227101732271380Ratregion
5505140Irx28113327200533272694Ratregion
5505089Taar481312255884222559654Ratregion
5505087Taar182612259554422596369Ratregion
5505091Taar990112231941222320312Ratregion
5505093Taar580712254779422548600Ratregion
5505095Taar278512257820822578992Ratregion
5505097Taar389012256939322570282Ratregion
5506147Irx36513327382733273891Ratregion
5506300DXS984982612073296620733791Ratregion
5506274D14S1058140611528742115288826Ratregion
5506973fc42c01.y159913061562130616219Ratregion
5507009fj17g12.x1013051636830517228Ratregion
5507133UniSTS:22476416011667719416677353Ratregion
5499607MARC_2026-2027:991932441:135312011602220116374Ratregion
5500087UniSTS:23664610511756967517569779Ratregion
5500013UniSTS:23613726412970619229706456Ratregion
5500037UniSTS:23631932512444567424445998Ratregion
5500041UniSTS:23631720011581035115810550Ratregion
5502275RH12424210412507795925078062Ratregion
5503414D1S282795611535328215354237Ratregion
5501123PMC140821P213211689496316895094Ratregion
5505218D10Csu144611521235715212802Ratregion
5505220D10Csu3011581260815813200Ratregion
Position Markers

Flank 1: (D1Rat14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2132,355,910 - 32,356,093 (+)MAPPER
Rnor_6.0134,993,348 - 34,993,530NCBI
Rnor_5.0136,395,486 - 36,395,668UniSTS
RGSC_v3.4172,480,946 - 2,481,129RGD
RGSC_v3.4172,480,947 - 2,481,129UniSTS
RGSC_v3.1172,480,805 - 2,481,238RGD
Celera130,981,511 - 30,981,693UniSTS
SHRSP x BN Map118.27UniSTS
SHRSP x BN Map118.27RGD
FHH x ACI Map127.8599RGD
Peak: (D1Rat246)
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,244,390 - 2,244,622 (+)MAPPER
Rnor_6.011,868,045 - 1,868,274NCBI
Rnor_5.013,564,603 - 3,564,832UniSTS
RGSC_v3.412,436,832 - 2,437,062RGD
RGSC_v3.412,436,833 - 2,437,062UniSTS
RGSC_v3.112,436,833 - 2,437,062RGD
Celera1793,147 - 793,378UniSTS
RH 3.4 Map116.7RGD
RH 3.4 Map116.7UniSTS
SHRSP x BN Map10.04UniSTS
SHRSP x BN Map10.04RGD
Cytogenetic Map1p13UniSTS
Flank 2: (D1Rat4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2111,481,312 - 11,481,482 (+)MAPPER
Rnor_6.0111,314,489 - 11,314,658NCBI
Rnor_5.0112,920,106 - 12,920,275UniSTS
RGSC_v3.4111,859,997 - 11,860,328RGD
RGSC_v3.4111,860,049 - 11,860,218UniSTS
RGSC_v3.1111,860,049 - 11,860,218RGD
Celera19,949,930 - 9,950,099UniSTS
RH 3.4 Map1131.2UniSTS
RH 3.4 Map1131.2RGD
RH 2.0 Map146.9RGD
SHRSP x BN Map19.25RGD
FHH x ACI Map17.84RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124368159Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128468970Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1134993530Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1134993530Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1134993530Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1164407321Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)125439343579402Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)125439343579402Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)125439343579402Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)125439386904217Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1186804543724576Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1383915911314658Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1457869349578693Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15655769122614963Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1565577285706974Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11131448975844121Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11131448983657083Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11131448983657083Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11131448983657083Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11131448983657083Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11131465834993348Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11249343957493439Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11362925158629251Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)11603307820130904Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11614314349547474Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11614314349547474Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12034156058000154Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12107930566079305Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12130082249454378Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12181262344409802Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12340642849547474Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12340642849547474Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12340642868406428Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123406428108057505Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)12429779978748000Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)125951907130917265Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13148945479689689Rat
731169Bp153Blood pressure QTL 1530.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13366777736129328Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13444911279449112Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13444911279449112Rat
2316649Bp344Blood pressure QTL 344arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13488839235680732Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general inducing agent: intravenous injection of 0.1ml of rabbit nephrotoxic serum to rat glomerular basement membrane 2293335
qtl_general number of animals used: 200-220g, 177 F2 males 2293335
qtl_general measurement method: 10 days after induction, rats were killed and blood collected from the abdominal aorta 2293335