Mcs16 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Mcs16 (Mammary carcinoma susceptibility QTL 16) Rattus norvegicus

Symbol: Mcs16
Name: Mammary carcinoma susceptibility QTL 16
RGD ID: 1600360
Previously known as: Chr 1p QTL
Trait: mammary gland integrity trait   (VT:0010552)    
Measurement Type: mammary tumor number   (CMO:0000343)    
LOD Score: 2.4
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.212,244,390 - 43,433,040RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.011,868,045 - 43,724,576RGD_MAPPER_PIPELINERnor6.0
Rnor_5.013,564,603 - 45,053,773RGDRnor5.0
RGSC_v3.412,436,832 - 37,799,020RGDRGSC3.4
RGSC_v3.112,436,833 - 37,801,965RGD
Cross Type: backcross
Strains Crossed: WKY/Ztm SPRD/Ztm 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
SPRD/Ztm  (IEA)
WKY/Ztm  (IEA)

References

References - curated
# Reference Title Reference Citation
1. The Mcs7 quantitative trait locus is associated with an increased susceptibility to mammary cancer in congenic rats and an allele-specific imbalance. Cotroneo MS, etal., Oncogene. 2006 Aug 17;25(36):5011-7. Epub 2006 Mar 27.
2. Genetic identification of distinct loci controlling mammary tumor multiplicity, latency, and aggressiveness in the rat. Quan X, etal., Mamm Genome. 2006 Apr;17(4):310-21. Epub 2006 Apr 4.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
62024Rps12ribosomal protein S1212168085421683010Rat
619706Ptprkprotein tyrosine phosphatase, receptor type, K11673889617236687Rat
71047Epm2aEPM2A glucan phosphatase, laforin157271115845338Rat
2581Esr1estrogen receptor 114110633541499104Rat
619965Adcy2adenylate cyclase 213437563934822252Rat
2150Arg1arginase 112047587820488422Rat
2742Grm1glutamate metabotropic receptor 1150582855453170Rat
3947Utrnutrophin167208547224313Rat
70494Terttelomerase reverse transcriptase12963721329659561Rat
3757Srd5a1steroid 5 alpha-reductase 113368606933720468Rat
69352Slc6a18solute carrier family 6 member 1812960728829621925Rat
3234Oprm1opioid receptor, mu 114316005743413409Rat
61988Hivep2HIVEP zinc finger 2183582058555993Rat
621016Pde7bphosphodiesterase 7B11517400115493267Rat
631382Taar4trace amine-associated receptor 412148105021482093Rat
3181Nmbrneuromedin B receptor191150339146081Rat
631385Taar7htrace amine-associated receptor 7h12137349321374569Rat
631386Taar8btrace amine-associated receptor 8B12130297821307489Rat
631388Taar7gtrace amine-associated receptor 7g12138736021388436Rat
631391Taar8atrace amine associated receptor 8A12133276321333887Rat
631395Taar7dtrace-amine-associated receptor 7d12140932521410401Rat
620523Tcf21transcription factor 2112270135322704212Rat
621621Taar1trace-amine-associated receptor 112151774221518740Rat
631390Taar8ctrace amine-associated receptor 8C12128984321290877Rat
631392Taar7btrace amine-associated receptor 7b12144083221441908Rat
631387Taar7atrace amine-associated receptor 7a12145093321452009Rat
631394Taar7etrace-amine-associated receptor 7e12140171621402792Rat
628825Enpp1ectonucleotide pyrophosphatase/phosphodiesterase 112069874620763741Rat
631383Taar9trace amine-associated receptor 912127497221275988Rat
708511Enpp3ectonucleotide pyrophosphatase/phosphodiesterase 312056370020635044Rat
708517Stxbp5syntaxin binding protein 5141824894335290Rat
621405Hey2hes-related family bHLH transcription factor with YRPW motif 212682213126832218Rat
621636Pex3peroxisomal biogenesis factor 3179125087954474Rat
3014Plagl1PLAG1 like zinc finger 1174772957517229Rat
621647Vipvasoactive intestinal peptide14206487842073219Rat
620112Cited2Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 211231242612314869Rat
621557Sdhasuccinate dehydrogenase complex flavoprotein subunit A12893596528960936Rat
621603Hint3histidine triad nucleotide binding protein 312703593627045799Rat
631393Taar7f-pstrace amine-associated receptor 7f, pseudogene12139567621396564Rat
620538Ppp1r14cprotein phosphatase 1, regulatory (inhibitor) subunit 14c13977340339886970Rat
620546Syne1spectrin repeat containing nuclear envelope protein 114151214641983382Rat
631384Taar6trace amine-associated receptor 612145847521459512Rat
727798Trmt11tRNA methyltransferase 11 homolog12705443727109765Rat
621392Ccn2cellular communication network factor 212080219920805315Rat
619856Trdntriadin12395565124410494Rat
1303141Phactr2phosphatase and actin regulator 2175912547860431Rat
620570Ifngr1interferon gamma receptor 111433316714351799Rat
1303053Fuca2alpha-L-fucosidase 2178859867900777Rat
1304818Hecahdc homolog, cell cycle regulator11252544512575358Rat
1303071Akap7A-kinase anchoring protein 712008719020217799Rat
3720Slc9a3solute carrier family 9 member A312912463329167912Rat
3715Slc6a3solute carrier family 6 member 312970944329750413Rat
621790Exoc3exocyst complex component 312909129829122056Rat
1306836Rnf217ring finger protein 21712601666826108736Rat
1304743Usturonyl-2-sulfotransferase126669832962276Rat
619747Stx7syntaxin 712119707521237320Rat
1307525Kiaa0408LKiaa0408-like12861560028630309Rat
1304744Stx11syntaxin 11172934277320060Rat
1308544Cfap90cilia and flagella associated protein 9013482589434849916Rat
1308551Adgrg6adhesion G protein-coupled receptor G6188128898954239Rat
1306375Mrpl36mitochondrial ribosomal protein L3612996548129968896Rat
1307131Reps1RALBP1 associated Eps domain containing 111269774212775562Rat
1307311Mthfd1lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like14044392640632911Rat
1307896Clptm1lCLPTM1-like12966754529683530Rat
1307979Txlnbtaxilin beta11240484512449977Rat
1305053Arhgap18Rho GTPase activating protein 1811840353118637306Rat
1307356Tent4aterminal nucleotidyltransferase 4A13376594933799405Rat
1307359Brd9bromodomain containing 912932998129357285Rat
3668Sgk1serum/glucocorticoid regulated kinase 112298025723098122Rat
1308509Hbs1lHBS1-like translational GTPase11609252916170082Rat
1308516Trip13thyroid hormone receptor interactor 1312935709329402078Rat
1306565Map3k5mitogen-activated protein kinase kinase kinase 511468577614904935Rat
1307335Il20rainterleukin 20 receptor subunit alpha11442421514494226Rat
1310121Tppptubulin polymerization promoting protein12925711129281134Rat
1305031Vta1vesicle trafficking 1190328619080635Rat
735159Ipcef1interaction protein for cytohesin exchange factors 114323790343451735Rat
1306801Clvs2clavesin 212373566023842685Rat
1305997Olig3oligodendrocyte transcription factor 311408125914083336Rat
1310175Slc2a12solute carrier family 2 member 1212280306822862204Rat
1311051Ppil4peptidylprolyl isomerase like 4122735822305639Rat
1309747Ice1interactor of little elongation complex ELL subunit 113264037232682669Rat
1309546Rmnd1required for meiotic nuclear division 1 homolog14085982940894376Rat
1309729Fastkd3FAST kinase domains 313485834234866988Rat
1310326Ccdc28acoiled-coil domain containing 28A11285766812872944Rat
1311467Myct1myc target 114201813742029410Rat
1359185Taar5trace amine-associated receptor 512146992321470936Rat
1310342ShprhSNF2 histone linker PHD RING helicase155288275602537Rat
1308671Mtrr5-methyltetrahydrofolate-homocysteine methyltransferase reductase13486699134899425Rat
1311459Nkd2NKD inhibitor of WNT signaling pathway 212944289829470839Rat
1309428Slc35d3solute carrier family 35, member D311456548214573581Rat
1305235Armt1acidic residue methyltransferase 114089455840918302Rat
1306482Rnf146ring finger protein 14612845886428475758Rat
1308866Map7microtubule-associated protein 711491043315037574Rat
1309405Fbxo5F-box protein 514219606842202437Rat
1309903Arfgef3ARFGEF family member 311324557813404319Rat
1309309Irx4iroquois homeobox 413003056130039549Rat
1308483Pex7peroxisomal biogenesis factor 711458269814646686Rat
1306962Slc18b1solute carrier family 18 member B112162823521670807Rat
1310945Ccdc170coiled-coil domain containing 17014094560741050010Rat
1309288Iydiodotyrosine deiodinase14000399940019323Rat
1307671Med23mediator complex subunit 2312049031520558461Rat
1307562Hddc2HD domain containing 212629403026313914Rat
1311553Hebp2heme binding protein 211319498213201777Rat
1310075Vnn1vanin 112153708421547395Rat
1309834Irx2iroquois homeobox 213066096030666378Rat
1309060Irx1iroquois homeobox 113129461531300444Rat
1307099Eya4EYA transcriptional coactivator and phosphatase 412217227522415978Rat
1306621Zbtb2zinc finger and BTB domain containing 214082745740846733Rat
1309642Adat2adenosine deaminase, tRNA-specific 2179545207975254Rat
1310294Perpp53 apoptosis effector related to PMP2211354206713554514Rat
1305474L3mbtl3L3MBTL histone methyl-lysine binding protein 311898876319089247Rat
1310128Med10mediator complex subunit 1013347006433481698Rat
1308889Lama2laminin subunit alpha 211767267518320641Rat
1310033Moxd1monooxygenase, DBH-like 112107512421165348Rat
1309527Tab2TGF-beta activated kinase 1/MAP3K7 binding protein 2123750262425115Rat
1305515Rgs17regulator of G-protein signaling 1714222224842324625Rat
1310046Adamts16ADAM metallopeptidase with thrombospondin type 1 motif, 1613243043632562481Rat
1309759Ginm1glycosylated integral membrane protein 1122463842262260Rat
1359672Slc12a7solute carrier family 12 member 712947269229554246Rat
1311239Pdcd6programmed cell death 612896651828982188Rat
1311240Taar2trace amine associated receptor 212150029021504259Rat
1303040Ahi1Abelson helper integration site 111576248515891213Rat
70988Akap12A-kinase anchoring protein 1214073012340819863Rat
1564382Spry3-ps1sprouty RTK signaling antagonist 3, pseudogene 113515836535158967Rat
1566426Ncoa7nuclear receptor coactivator 712685622827016950Rat
1565215Rpl26-ps2ribosomal protein L26, pseudogene 212891793728918420Rat
1566017Sash1SAM and SH3 domain containing 1131199153418536Rat
1559997Rab32RAB32, member RAS oncogene family149461934961003Rat
1560020MybMYB proto-oncogene, transcription factor11593977115973367Rat
1564259Adgbandroglobin147536214896268Rat
1560849Themisthymocyte selection associated11643390616623889Rat
1564281Zdhhc11zinc finger, DHHC-type containing 1112929633429327227Rat
1563246Rspo3R-spondin 312828391428368661Rat
1311012Samd5sterile alpha motif domain containing 5140415474090909Rat
1308124Nhsl1NHS-like 111295652513188580Rat
1303169Il22ra2interleukin 22 receptor subunit alpha 211435373614377844Rat
1311933Leg1liver enriched gene 112879990228816230Rat
1359258Taar7ctrace amine-associated receptor 7C12142936421430440Rat
1311954Nsun2NOP2/Sun RNA methyltransferase 213366213933685887Rat
1559857Ahrraryl-hydrocarbon receptor repressor12899363429088673Rat
1309704Bclaf1BCL2-associated transcription factor 111508843615117666Rat
1560633Rpl27al2ribosomal protein L27A like 2141709944174755Rat
1311264Ltv1LTV1 ribosome biogenesis factor175656737578398Rat
1564024Tmem200atransmembrane protein 200A11932364619408324Rat
1359654Echdc1ethylmalonyl-CoA decarboxylase 112847635428507173Rat
1559962Hmgb2-ps6high mobility group box 2, pseudogene 611940916119410260Rat
1560609Vnn3vanin 312157136421583626Rat
1560303Smokl1sperm motility kinase like 111344112013451989Rat
1311599Lpcat1lysophosphatidylcholine acyltransferase 112976607029816401Rat
735106Ccdc127coiled-coil domain containing 12712892842028935885Rat
1359566Taar3trace amine-associated receptor 312149153821492566Rat
1583514LOC681177similar to GTPase activating protein testicular GAP113567520035781741Rat
1586689Calm1-ps2calmodulin 1, pseudogene 211971054019711425Rat
1584748Cycsl1cytochrome c, somatic like 114039100640392349Rat
1584766Brms1-ps1BRMS1, transcriptional repressor and anoikis regulator, pseudogene 114039663240399871Rat
1583609Dlat-ps1dihydrolipoamide S-acetyltransferase, pseudogene 113323121133233823Rat
1587241Zfp273l-ps1zinc finger protein 273 like, pseudogene 113522232535238553Rat
1562524Rpl27l6ribosomal protein L27 like 614254115942541467Rat
1583676Plekhg1pleckstrin homology and RhoGEF domain containing G114034868440434063Rat
1359367Fbxo30F-box protein 30156553415671558Rat
1583867Atp6v1a-ps2ATPase H+ transporting V1 subunit A, pseudogene 2135315823533742Rat
1564978Lrrc14bleucine rich repeat containing 14B12892147528925646Rat
1562920Aig1androgen-induced 1180464308269276Rat
1566336Cep72centrosomal protein 7212922531229255294Rat
1566284Hnrnpa1-ps47heterogeneous nuclear ribonucleoprotein A1, pseudogene 4713960157639603128Rat
1566325Zfp874bzinc finger protein 874b13500232135014324Rat
1563977Epb41l2erythrocyte membrane protein band 4.1-like 211986301020037795Rat
1594328Slc6a19solute carrier family 6 member 1912958619129604964Rat
1589982Ahcy-ps10adenosylhomocysteinase, pseudogene 1012032070620322406Rat
1590840Hnrnpa1-ps18heterogeneous nuclear ribonucleoprotein A1, pseudogene 1813400507334006590Rat
1590841Rpl10a-ps11ribosomal protein L10A, pseudogene 1113120294431203499Rat
1590218Aldh8a1aldehyde dehydrogenase 8 family, member A111618394016203385Rat
1589061Rplp0-ps4ribosomal protein lateral stalk subunit P0, pseudogene 411735763717358522Rat
1586120Fbl-ps8fibrillarin, pseudogene 8129766592978779Rat
1586034Dnaja4-ps1DnaJ heat shock protein family (Hsp40) member A4, pseudogene 112732226827323406Rat
1586664Smlr1small leucine-rich protein 111983739019858906Rat
1587834Samd3sterile alpha motif domain containing 311910076719148241Rat
1586097Nt5c2-ps25'-nucleotidase, cytosolic II, pseudogene 214269972042701497Rat
1586100Rab1-ps1RAB1, member RAS oncogene family, pseudogene 113879930038800803Rat
1586104Hdac1-ps17Histone deacetylase 1, pseudogene 1712801008128010909Rat
1586105Hnrnpa1-ps43heterogeneous nuclear ribonucleoprotein A1, pseudogene 4312675747026758537Rat
1586106Sec24c-ps2SEC24 homolog C, COPII coat complex component, pseudogene 212671385926716732Rat
1586108Zbed4-ps1zinc finger, BED-type containing 4, pseudogene 112390376923906388Rat
1586110Ruvbl1-ps2RuvB-like AAA ATPase 1, pseudogene 211751953517521754Rat
1586112Cptp-ps1ceramide-1-phosphate transfer protein, pseudogene 111413220714138351Rat
1586113Rpl10a-ps13ribosomal protein L10A, pseudogene 1311378048913781254Rat
1586993Sf3b5splicing factor 3b, subunit 5173570407357752Rat
1559475Dctn3l1dynactin 3-like 1155268315527628Rat
1586115Hsp90aa1-ps2heat shock protein 90 alpha family class A member 1, pseudogene 211249488512496646Rat
1586116Ftl1-ps4ferritin light chain 1, pseudogene 4174167757429173Rat
1586117Plxnb2-ps1plexin B2, pseudogene 1166635766665946Rat
1586118Slc25a53-ps1solute carrier family 25, member 53, pseudogene 1163305346331811Rat
1589918Bcl2l13-ps1Bcl2-like 13, pseudogene 112889484128901203Rat
1583256AbraclABRA C-terminal like11265495112665143Rat
1584802Ndufs6NADH:ubiquinone oxidoreductase subunit S612996883329977423Rat
1587386Fth1-ps4ferritin heavy chain 1, pseudogene 412363807123638977Rat
1589275Tnfaip3TNF alpha induced protein 311370921113724291Rat
1597456Tbpl1TATA-box binding protein like 112277789222803305Rat
1593465Cenpwcentromere protein W12752532427530464Rat
1593979Zfp58zinc finger protein 5813502047735053203Rat
1597152Zc3h12dzinc finger CCCH type containing 12D123131102348820Rat
1593145Rpl13a-ps12ribosomal protein L13A, pseudogene 1214288511242885723Rat
1593146Mrpl30-ps10mitochondrial ribosomal protein L30, pseudogene 1012106800321068796Rat
1593147Ldha-ps21lactate dehydrogenase A, pseudogene 21166243716625798Rat
1597161LOC301792clone rb2 rab1a related protein pseudogene13639757136398662Rat
1594836Dr1-ps1down-regulator of transcription 1, pseudogene 112564945525650368Rat
1594796Tpd52l1TPD52 like 112617203826290704Rat
1594173Zfp729bzinc finger protein 729b13510273235137107Rat
1595500Psma7-ps1proteasome 20S subunit alpha 7, pseudogene 113432412834324855Rat
1595515Ap2b1-ps1adaptor related protein complex 2 subunit beta 1, pseudogene 113429219034295856Rat
1594397Taar7i-pstrace amine associated receptor 7i, pseudogene12135270821353774Rat
1598121Ube2ql1ubiquitin-conjugating enzyme E2Q family-like 113354881433589174Rat
1598009Gje1gap junction protein, epsilon 1190857899088204Rat
1598312Mtrf1lmitochondrial translation release factor 1 like14220855342221020Rat
1598314Rbs10l2ribosomal protein S10 like 211894812418948790Rat
1594231Zfp455l1zinc finger protein 455 like 113486693434944939Rat
2316474Vom1r-ps1vomeronasal 1 receptor pseudogene 1146918754692748Rat
2319701Zc2hc1bzinc finger, C2HC-type containing 1B175372917565054Rat
2321467Tpt1l3tumor protein, translationally-controlled 1 like 311910738919108208Rat
2321841Ccnb2-ps2cyclin B2, pseudogene 212009973220101236Rat
2324149LOC100362709proteasome activator complex subunit 2-like13472220534723042Rat
6493251Nid2-ps2nidogen 2, pseudogene 213593681635964021Rat
6486936C1h3orf38similar to human chromosome 3 open reading frame 38186842558685096Rat
6494479Zfp502zinc finger protein 50212888439028908726Rat
6494892Mtfr2mitochondrial fission regulator 211512323215138632Rat
6495462Cycs-ps7cytochrome c, somatic, pseudogene 7139998064002084Rat
6495554Ppid-ps12peptidylprolyl isomerase D, pseudogene 1213406515534070734Rat
6499508LOC100910237uncharacterized LOC10091023712167994021680668Rat
7499806LOC102547350uncharacterized LOC10254735011482977214845233Rat
7501317LOC102547024uncharacterized LOC102547024156121185621767Rat
7514941Cd99l3CD99 molecule like 313931585739600133Rat
7505831LOC102550206uncharacterized LOC10255020611379689813838511Rat
7532311LOC102553363uncharacterized LOC10255336312064633620663699Rat
7511239LOC102546606uncharacterized LOC10254660614272165642725386Rat
7511531LOC102552728uncharacterized LOC10255272812007906220087734Rat
7537322Cnn2-ps1calponin 2, pseudogene 1157615715765512Rat
7540144LOC102546520uncharacterized LOC10254652013838878238396368Rat
7650092LOC102553526uncharacterized LOC10255352612093016520935165Rat
7621680Eif4a1-ps5eukaryotic translation initiation factor 4A1, pseudogene 5147603764761823Rat
7636033Arf1-ps5ADP-ribosylation factor 1, pseudogene 512859712228600478Rat
7636934Rpl29-ps7ribosomal protein L29, pseudogene 712150126521502159Rat
7653582LOC102546491uncharacterized LOC10254649111193454012088738Rat
7624072LOC102553457uncharacterized LOC10255345712093516520952028Rat
7654508LOC102547285uncharacterized LOC102547285161154836129261Rat
7576411LOC102552459uncharacterized LOC10255245911078268410845437Rat
7630011Mapre1-ps1microtubule-associated protein, RP/EB family, member 1, pseudogene 114054595940552212Rat
7630698LOC102555830uncharacterized LOC10255583012286840122877359Rat
7616083LOC102547090uncharacterized LOC102547090156259155655228Rat
7594200LOC102552210uncharacterized LOC10255221011001495210025253Rat
7620758LOC102546604uncharacterized LOC10254660411207361212099782Rat
7544841LOC102555832uncharacterized LOC10255583213967915439685439Rat
7546851LOC102546831uncharacterized LOC10254683111216969212289440Rat
7600894Zfp748zinc finger protein 74813507540835091416Rat
7579399LOC102554376uncharacterized LOC10255437612216858822169892Rat
7601783LOC10254760460S ribosomal protein L27a-like11466327114663713Rat
7550261Gnb1-ps3G protein subunit beta 1, pseudogene 313785007237852984Rat
7551033LOC102546790uncharacterized LOC10254679014299602243017130Rat
7603956Rpl29-ps18ribosomal protein L29, pseudogene 1811321719913218439Rat
7583283LOC102546868uncharacterized LOC10254686812353050623533251Rat
7605452LOC102547411uncharacterized LOC10254741111468074314684752Rat
7734973Nid2l2nidogen 2 like 213862589138700200Rat
7704848Znf726l-ps1zinc finger protein 726 like, pseudogene 113495272434955509Rat
7723368Yes1-ps1YES proto-oncogene 1, Src family tyrosine kinase14336702943372347Rat
7687370LOC102552144uncharacterized LOC102552144196839259743071Rat
7740967Nkain2sodium/potassium transporting ATPase interacting 212466862725877051Rat
7697240Map7l-ps1microtubule-associated protein 7 like, pseudogene 111501409915020672Rat
7697243Zfp729zinc finger protein 72913516573235183894Rat
7718701LOC102547287zinc finger protein 728-like13505253535063324Rat
7744936Amn1-ps1antagonist of mitotic exit network 1, pseudogene 111653730916537787Rat
7745301LOC102552962uncharacterized LOC10255296212034200220349386Rat
7746808Zfpl2zinc finger protein like 212886591728875433Rat
7676044LOC102549339uncharacterized LOC10254933911292387212947646Rat
7678966LOC102555465uncharacterized LOC10255546512257657822594738Rat
7709341LOC102549233uncharacterized LOC10254923311287300512890018Rat
7681875LOC102553527uncharacterized LOC10255352713109632531105986Rat
9097021Eef1a1-ps14eukaryotic translation elongation factor 1 alpha 1, pseudogene 14171820187186559Rat
9078384LOC103690946activated RNA polymerase II transcriptional coactivator p15 pseudogene12963011729632569Rat
9075724LOC103690928U6 snRNA-associated Sm-like protein LSm5 pseudogene11846343218469878Rat
9117395LOC103690921uncharacterized LOC103690921190806609091019Rat
9220759Rpl30-ps2ribosomal protein L30, pseudogene 214248714542487730Rat
9308929LOC103690944uncharacterized LOC10369094412597207826002017Rat
9225009Ube2n-ps4ubiquitin-conjugating enzyme E2N, pseudogene 414274362642748575Rat
9270734Zbtb2lzinc finger and BTB domain containing 2 like14085412740859896Rat
9246970Ect2lepithelial cell transforming 2 like11277570512857538Rat
9257174LOC103690942solute carrier family 2, facilitated glucose transporter member 3 pseudogene12379865323799648Rat
9302186LOC103690933uncharacterized LOC10369093312170462321734218Rat
9343707LOC103690943uncharacterized LOC10369094312448027524481011Rat
9344246LOC10369095160S ribosomal protein L34 pseudogene13500559135008025Rat
11364129LOC10834973040S ribosomal protein S20 pseudogene13275477832761865Rat
11364909LOC108349493uncharacterized LOC10834949311226868712276265Rat
11455515LOC108348755uncharacterized LOC10834875513351530533523055Rat
11446120LOC108349507uncharacterized LOC10834950712907865029084116Rat
11464132LOC10834944240S ribosomal protein S15a pseudogene13364139933642354Rat
11465027Leg1-ps1liver enriched gene 1, pseudogene 112857121028583888Rat
11437209Rpl36a-ps17ribosomal protein L36A, pseudogene 1712111964521120113Rat
11437431LOC108349187uncharacterized LOC10834918712123747721243704Rat
11357155LOC108349492uncharacterized LOC10834949211222771812234666Rat
11363865LOC10834900860S ribosomal protein L7a pseudogene11653594916536761Rat
11439716LOC108349499uncharacterized LOC10834949911557391515579154Rat
11365258LOC108349443uncharacterized LOC10834944312185917221870434Rat
11451513LOC108349392uncharacterized LOC10834939213328716733302936Rat
11368884LOC108349236uncharacterized LOC10834923612310406023112500Rat
11429793LOC108349511uncharacterized LOC10834951113496182534967714Rat
11430648LOC108349488uncharacterized LOC108349488189768408984115Rat
11452393LOC10834972640S ribosomal protein S6 pseudogene11386791813868679Rat
11452897Rps29l2ribosomal protein S29 like 212126179721262125Rat
11394768LOC108349732uncharacterized LOC10834973213735354037360813Rat
11414134LOC108348899uncharacterized LOC10834889912348657323493321Rat
11415566Trnae-cuc1transfer RNA glutamic acid (anticodon CUC) 112684641326846484Rat
11426093LOC108349489uncharacterized LOC10834948911002570410057894Rat
11396508LOC108348767uncharacterized LOC108348767126788182693356Rat
11385252Rpl36a-ps9ribosomal protein L36A, pseudogene 911975479819755162Rat
11375087LOC108349508uncharacterized LOC10834950813217249432206222Rat
11386974LOC108349497uncharacterized LOC10834949711346252713519309Rat
11398775LOC10834850860S ribosomal protein L7a pseudogene12765349227655379Rat
113875701700020N01RiklRIKEN cDNA 1700020N01 gene like12325955723395640Rat
11389337LOC108349494uncharacterized LOC10834949411227933212287765Rat
11401898Trnal-uaa1transfer RNA leucine (anticodon UAA) 1172719807272062Rat
11404601LOC10834876960S ribosomal protein L7a pseudogene11365780113658593Rat
11520738LOC10834951760S ribosomal protein L7a pseudogene14029604740296903Rat
11479453Mtcl3MTCL family member 312862903628701416Rat
11508573LOC10834872660S ribosomal protein L21 pseudogene12347687823477482Rat
11496872LOC10834907140S ribosomal protein S27-like12533649425337281Rat
11512463LOC108349469uncharacterized LOC10834946912330225523315783Rat
41137230LOC120099105uncharacterized LOC12009910513610834336115467Rat
41167813LOC120100342small nucleolar RNA SNORA70157208035720940Rat
41235294Trnaa-agc77transfer RNA alanine (anticodon AGC) 7712458968624589766Rat
41281815LOC120098775uncharacterized LOC120098775140920744094867Rat
41355283LOC120098782uncharacterized LOC120098782173507417353786Rat
41355366LOC120100430small nucleolar RNA SNORA17193835239383653Rat
41356485Rab1a-ps4RAB1A, member RAS oncogene family, pseudogene 413812763038128295Rat
41087395LOC120099100uncharacterized LOC12009910013518412235188477Rat
41088638LOC120098790uncharacterized LOC12009879011226686012268679Rat
41204827LOC12009877140S ribosomal protein S20-like122651152266775Rat
41277239LOC120100214U7 small nuclear RNA11037918910379250Rat
41284286LOC120098779uncharacterized LOC120098779162008346241934Rat
41324741LOC120099108uncharacterized LOC12009910814114428641198117Rat
41357357LOC120098805uncharacterized LOC12009880511688652316887639Rat
41114960Rpl7a-ps6ribosomal protein L7a, pseudogene 6143730764376648Rat
41206076Rnu6-959RNA, U6 small nuclear 95914182242541822528Rat
41286023LOC120098799uncharacterized LOC12009879911445455814462032Rat
41325772LOC120100129U6 spliceosomal RNA11776047217760578Rat
41090434Rabggtb-ps2Rab geranylgeranyltransferase subunit beta, pseudogene 213374848833751375Rat
41091493LOC120100435small nucleolar RNA SNORA1713311115333111279Rat
41115603LOC120098885uncharacterized LOC12009888512276637922777891Rat
41326680Rnu6-884RNA, U6 small nuclear 884130562873056391Rat
41091704LOC120100351small nucleolar RNA SNORA31163083546308480Rat
41092135Eif1-ps5eukaryotic translation initiation factor 1, pseudogene 512894424028944805Rat
41092469LOC120100446small nucleolar RNA SNORA1712874163928741754Rat
41116364LOC120100089uncharacterized LOC12010008913933371439367466Rat
41146272Rnu11-3RNA, U11 small nuclear 311938143719381570Rat
41208739Etv5-ps1ETS variant transcription factor 5, pseudogene 1126151582622691Rat
41327994LOC120097700uncharacterized LOC12009770012778739427789150Rat
41094137LOC120100092uncharacterized LOC12010009213944664439458137Rat
41175611LOC120100154U6 spliceosomal RNA11506729615067402Rat
41260918LOC120098884uncharacterized LOC12009888412275015822766306Rat
41261236LOC120098786uncharacterized LOC120098786185864828641715Rat
41261521LOC120100131U6 spliceosomal RNA12313135023131456Rat
41261577LOC120098791uncharacterized LOC12009879111228025712285820Rat
41095055LOC120097701uncharacterized LOC12009770113015796330160240Rat
41120638LOC120100362small nucleolar RNA SNORA2413371671333716842Rat
41176576LOC120100395small nucleolar RNA U2-1914221196842212047Rat
41187490Mycbp-ps1Myc binding protein, pseudogene 113403274734033058Rat
41331278LOC120100369small nucleolar RNA SNORA4111567916915679309Rat
41150335LOC120098803uncharacterized LOC12009880311566331615668122Rat
41177791LOC120098806uncharacterized LOC12009880611679110416795556Rat
41342237Trnap-agg24transfer RNA proline (anticodon AGG) 2413455371434553795Rat
41123377LOC120100087uncharacterized LOC12010008713961516839639974Rat
41123607LOC120098776uncharacterized LOC120098776142708544275128Rat
41179892LOC120093155uncharacterized LOC12009315513527185235375055Rat
41191148LOC120097696uncharacterized LOC12009769613880800538876306Rat
41192130Nid2-ps5nidogen 2, pseudogene 513613231736147184Rat
41343609LOC120097694igE-binding protein-like13413543734150006Rat
41343633LOC120100475U2 spliceosomal RNA14310999143110055Rat
41367908LOC120100097uncharacterized LOC12010009714180708741809467Rat
41124938LOC120100484small nucleolar RNA U1312340034023400445Rat
41267122LOC120098984uncharacterized LOC12009898412984137229901226Rat
41289337LOC120098792developmental pluripotency-associated protein 5A-like11243850612441174Rat
41102376LOC120100090uncharacterized LOC12010009013849901038527803Rat
41158208LOC120097186uncharacterized LOC12009718611449401614512881Rat
41182833Nid2-ps6nidogen 2, pseudogene 613954880339562954Rat
41183125LOC120098836uncharacterized LOC12009883612056147420565071Rat
41183496Sub1-ps3SUB1 regulator of transcription, pseudogene 311426429814265312Rat
41195287Rps2-ps34ribosomal protein S2, pseudogene 3411407029014072753Rat
41270053LOC120099102rho GTPase-activating protein 20-like13584919135873247Rat
41195942LOC120098787uncharacterized LOC12009878711084522710887107Rat
41348685LOC120100374small nucleolar RNA SNORA42/SNORA80 family11482858714828721Rat
41071539LOC120100143U6 spliceosomal RNA11832812518328231Rat
41104967LOC120097699cytochrome b-c1 complex subunit 10-like11875161218751912Rat
41228825Atg4b-ps1autophagy related 4B, cysteine peptidase, pseudogene 111655334516558705Rat
41107286LOC120098800uncharacterized LOC12009880011502561015026234Rat
41198301LOC120098802uncharacterized LOC12009880211556374615573829Rat
41230696Snord100small nucleolar RNA, C/D box 10012168226921682343Rat
41295609Rpl13a-ps9ribosomal protein L13A, pseudogene 9184240878425747Rat
41274044LOC120100449small nucleolar RNA SNORA1712761898427619106Rat
41275469LOC120100489U2 spliceosomal RNA11064428310644402Rat
41352398LOC120097708uncharacterized LOC12009770814311178143117463Rat
41376744LOC120100178U1 spliceosomal RNA14058664340586804Rat
41109328Rab1a-ps2RAB1A, member RAS oncogene family, pseudogene 213680037436801331Rat
41133462LOC120098794uncharacterized LOC12009879411396290913979037Rat
41201839LOC120098986uncharacterized LOC12009898612990898529924691Rat
41202378LOC120098783uncharacterized LOC120098783178489847858411Rat
40944528Cfl1-ps8cofilin 1, pseudogene 8180262218031917Rat
40971154LOC120100212U7 small nuclear RNA11037737810377442Rat
41011483LOC120097411igE-binding protein-like12160060821621842Rat
40948223Nid2-ps13nidogen 2, pseudogene 1313841522738440562Rat
41340848LOC120098795uncharacterized LOC12009879511410039714118505Rat
40955162LOC120098992uncharacterized LOC12009899213117776731197773Rat
40978443LOC120100095uncharacterized LOC12010009513961491439670599Rat
40999580LOC120100096uncharacterized LOC12010009613847592038485517Rat
40957540LOC120100405small nucleolar RNA SNORA48173470757347218Rat
40957964LOC120098785uncharacterized LOC120098785180216018025425Rat
40983824LOC120098809uncharacterized LOC12009880911971052519718514Rat
41003244LOC120098789ATP-dependent RNA helicase DBP3-like11208324212084262Rat
40933802LOC120098871uncharacterized LOC12009887112234033222351065Rat
40985057LOC120100215U7 small nuclear RNA13494816234948226Rat
41005445LOC120098801uncharacterized LOC12009880111503629615043478Rat
40936004LOC120100161U6 spliceosomal RNA11306786113067967Rat
40938093Nid2-ps4nidogen 2, pseudogene 413927484839317809Rat
40962765Rnu6-783RNA, U6 small nuclear 78313480425834804364Rat
40987896LOC120098781uncharacterized LOC120098781173467257349946Rat
40988173LOC120098772uncharacterized LOC120098772124750502491506Rat
40938986Rnu6-1001RNA, U6 small nuclear 100112519679325196899Rat
40964934LOC120100455small nucleolar RNA SNORA1712526492725265029Rat
41009465LOC120098774uncharacterized LOC120098774127193512734119Rat
40941038Rnu4-5RNA, U4 small nuclear 512544589825446060Rat
40967854LOC120100474small nucleolar RNA SNORD8814129686941296962Rat
40969921LOC120098796uncharacterized LOC12009879611423540814243329Rat
40996352Rab1a-ps3RAB1A, member RAS oncogene family, pseudogene 313750936237511163Rat
40996452LOC120098798uncharacterized LOC12009879811439383514404874Rat
41047298LOC120100440small nucleolar RNA SNORA17150382355038365Rat
41312082LOC120100169U6 spliceosomal RNA11624352816243631Rat
41024257Rpl23a-ps3ribosomal protein L23a, pseudogene 311615578316163479Rat
41244766Snora33small nucleolar RNA, H/ACA box 3312168260321682729Rat
41312817LOC120098793uncharacterized LOC12009879311376777613771837Rat
41314157LOC120098807uncharacterized LOC12009880711824565718317592Rat
41077590LOC120098893uncharacterized LOC12009889312313267323172438Rat
41078939LOC120098804uncharacterized LOC12009880411672294416736191Rat
41050934LOC120098989uncharacterized LOC12009898912998124829993418Rat
41051800LOC120100093uncharacterized LOC12010009313904619339056506Rat
41248032Npm1-ps5nucleophosmin 1, pseudogene 511800684618007514Rat
41332180Trnav-cac7transfer RNA valine (anticodon CAC) 712512645025126530Rat
41030689LOC120100112U4 spliceosomal RNA12774229627742439Rat
41053266LOC120100094uncharacterized LOC12010009413789243737948050Rat
41053334Rab1a-ps1RAB1A, member RAS oncogene family, pseudogene 113664225336643958Rat
41255199LOC120098778uncharacterized LOC120098778149622085059048Rat
41053469LOC120097702uncharacterized LOC12009770213260885332613035Rat
41257596LOC120097350translation initiation factor IF-2-like11898864418992023Rat
41057305LOC120098788uncharacterized LOC12009878811190503611913976Rat
41057629LOC120098995uncharacterized LOC12009899513139434731396128Rat
41220638LOC120100379small nucleolar RNA SNORA2112936727429367411Rat
41221841LOC120100424small nucleolar RNA SNORA17160057856005914Rat
41258807LOC120100091uncharacterized LOC12010009113901301039029344Rat
41222494LOC120100088uncharacterized LOC12010008813773126837738194Rat
41222953Rpl21-ps4ribosomal protein L21, pseudogene 413508614635087759Rat
41059876LOC120100355small nucleolar RNA SNORA36 family142761314276261Rat
41224548Hnrnpa1-ps23heterogeneous nuclear ribonucleoprotein A1, pseudogene 2312838267628386857Rat
41337719LOC120099107uncharacterized LOC12009910714020591640280051Rat
41302774LOC120098808uncharacterized LOC12009880811959611119606529Rat
41037329LOC120099103uncharacterized LOC12009910313609044736107414Rat
41063986LOC120099104uncharacterized LOC12009910413603618236044823Rat
41064447LOC120099099uncharacterized LOC12009909913498934035015200Rat
41016349LOC120097707uncharacterized LOC12009770714215732742158793Rat
41305700LOC120100357small nucleolar RNA SNORA36 family132220633222194Rat
41018580LOC120098780uncharacterized LOC120098780173338417336406Rat
41042088LOC120099033uncharacterized LOC12009903313324656133288412Rat
41067050LOC120100438small nucleolar RNA SNORA1712011976620119889Rat
41307068LOC120100394small nucleolar RNA U2-3014221219042212259Rat
41042371LOC120100344small nucleolar RNA SNORD10112168155721681630Rat
41043647LOC120100398U2 spliceosomal RNA12047052420470672Rat
41021941LOC120098932uncharacterized LOC12009893212608422526091345Rat
41021964Trnaa-agc27transfer RNA alanine (anticodon AGC) 27186529468653026Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34449D1Mgh17149186064968606632Ratregion
34662D1Mgh215012234064722340797Ratregion
36137D1Rat516211043533910435501Ratregion
36199D1Rat112911024655010246679Ratregion
36303D1Rat626511933357119333836Ratregion
37296D1Rat14821111576058215760793Ratregion
37364D1Rat15023811524559815245841Ratregion
37598D1Rat17618913273727332737458Ratregion
35242D1Rat1118014026042240260599Ratregion
35467D1Rat717311543162115431794Ratregion
37198D1Rat18622511532110015321325Ratregion
37610D1Rat167223141628074163036Ratregion
37658D1Rat247216162366426236858Ratregion
37974D1Rat21124313105084031051081Ratregion
36550D1Rat1215713349198733492143Ratregion
36568D1Rat417011148131211481482Ratregion
36590D1Rat16015512845987428460027Ratregion
36626D1Rat1516714343287343433040Ratregion
36640D1Rat1416613235591032356093Ratregion
36651D1Rat1615114223682142236969Ratregion
34878D1Rat313611172494211725077Ratregion
34973D1Rat1315814079518940795347Ratregion
35146D1Rat2137146965614696698Ratregion
35685D1Rat1012812469741724697545Ratregion
35853D1Rat912912952149329521616Ratregion
35885D1Rat814212887978028879880Ratregion
39666D1Rat246227122443902244622Ratregion
38028D1Rat12110312076315820763261Ratregion
40402D1Rat325316141370604137356Ratregion
40704D1Rat25220512339999023400201Ratregion
38568D1Rat23824613373786933738115Ratregion
38640D1Rat15320712070439820704605Ratregion
38782D1Rat13619514328473143284926Ratregion
40086D1Rat25114312742866727428818Ratregion
39086D1Rat23913413178872531788853Ratregion
39234D1Rat248229159258775926118Ratregion
42064D1Arb223911381137413811615Ratregion
42077D1Arb332612234059822340924Ratregion
42264D1Rat46311012220216622202271Ratregion
42265D1Arb518313332442333324606Ratregion
42442D1Rat387118144590394459133Ratregion
42443D1Rat388219180864688086692Ratregion
42444D1Rat32921711206940612069621Ratregion
42445D1Rat49113911294663112946770Ratregion
42446D1Rat38921111483195914832174Ratregion
42448D1Rat39220011912178019121980Ratregion
42449D1Rat39123811964618819646425Ratregion
42451D1Rat47920412016619620166426Ratregion
42451D1Rat47920412016622220166426Ratregion
42452D1Rat39420612812535928125552Ratregion
42453D1Rat47822112491183924912057Ratregion
42454D1Rat39321112817879628178996Ratregion
42455D1Rat39721114079516340795374Ratregion
42456D1Rat33017213297220532972379Ratregion
42456D1Rat33017213297220532972816Ratregion
42456D1Rat33017213297229132972379Ratregion
42459D1Rat40021914079512940795348Ratregion
42460D1Rat40221514215750442157730Ratregion
40768D1Rat25011711371715813717273Ratregion
40826D1Rat25421214274504142745251Ratregion
40880D1Rat249237178166717816912Ratregion
41656D1Rat37716512974323529743400Ratregion
41774D1Rat326235140305384030778Ratregion
41808D1Rat328141196554079655550Ratregion
41870D1Rat327230178182617818492Ratregion
43169D1Got2161136504193650580Ratregion
43170D1Got3217152404535240670Ratregion
43171D1Got4197144358344436033Ratregion
43172D1Got6206167655846766052Ratregion
43172D1Got6206167658466766052Ratregion
43173D1Got7127173509927351121Ratregion
43174D1Got8230185281138528343Ratregion
43175D1Mgh16143159258745926029Ratregion
43176D1Wox31109134198133419938Ratregion
43180D1Got1012811284625212846380Ratregion
43182D1Got1424511345060313450845Ratregion
43183D1Got1517511241507812415253Ratregion
43185D1Got925611332372613323984Ratregion
43187D1Got1815411521867215218826Ratregion
43188D1Got1219611415491514155106Ratregion
43189D1Got2112511531327815313403Ratregion
43191D1Got2318011821206118212241Ratregion
43192D1Got2416511863955918639724Ratregion
43193D1Got1115011653480616534956Ratregion
43194D1Got2517311878235418782525Ratregion
43195D1Got1918611727253717272723Ratregion
43196D1Got2220411851322218513426Ratregion
43197D1Got2620612023483820235046Ratregion
43198D1Got2920212232122222321426Ratregion
43200D1Got2714912298244022982586Ratregion
43201D1Got3114612284279422842940Ratregion
43204D1Got3430012833116228331462Ratregion
43205D1Got3725312846122828461481Ratregion
43206D1Got3517912808592828086107Ratregion
43661D1Got28325613200363932003890Ratregion
60237D1Got27291136398733639964Ratregion
60238D1Got27320212970402129704223Ratregion
60243D1Got3213612629534526295481Ratregion
60244D1Got3618713001973330019920Ratregion
60245D1Got3818512909814429098329Ratregion
60246D1Got3916714212506642125233Ratregion
60247D1Got4014014154927241549412Ratregion
60248D1Got4118114190794141908122Ratregion
60250D1Got4315914220475342204912Ratregion
60251D1Got4426414266269242662956Ratregion
60252D1Got4512314220475642204879Ratregion
60254D1Got5210165973546597559Ratregion
625770D1Got1202137271623727364Ratregion
625791D1Got2021911534181115342030Ratregion
62435D1Uia13274167402216740495Ratregion
66403D1Mco418012903803729038251Ratregion
66609D1Mco3419311347446913474678Ratregion
66688D1Uia1520112867125728671458Ratregion
67242D1Arb425414023688040237138Ratregion
67244D1Arb713814319187143192009Ratregion
67300D1Arb40334150609455061273Ratregion
1576372D1Ztm1015211524841715248567Ratregion
1576374D1Ztm822211520283215203054Ratregion
1576384D1Ztm923411518893515189169Ratregion
1631110D1Got30414514095149740951644Ratregion
1632082D1Cebr1018812991673329916921Ratregion
1626786D1Mco7525013276550232766175Ratregion
1626786D1Mco7525013276592532766175Ratregion
1627243D1Mco7217412580818825808362Ratregion
1627347D1Mco7324813006477630065024Ratregion
1627499D1Mco7419613193062231930818Ratregion
1627856D17Got21514913248534932485498Ratregion
1628396D17Got22215113110931331109465Ratregion
1629050D1Got366125184031288403253Ratregion
1629318D1Cebr1116412951554529515709Ratregion
1629386D1Wox8215012405052124050671Ratregion
1638813D1Got30517313230874832308921Ratregion
1641531D1Wox5114312970884929708992Ratregion
1633578D1Wox4520613332442833324634Ratregion
1639850D1Got43924513699110336991380Ratregion
1640652D1Got43320612558681925587025Ratregion
1635008D1Got37228211261573912616017Ratregion
1635563D1Got3019111860661118606702Ratregion
1636822D1Got36314712624678026246927Ratregion
1637068D17Got2219913075895930759055Ratregion
1637228D1Cebr1220312950620229506405Ratregion
1637337D1Got3038612821629328216379Ratregion
1632478D17Got22430013204344432043744Ratregion
2315138D1Mco12224813294179832942046Ratregion
2315140D1Mco12321913298979032990009Ratregion
2315142D1Mco10919613247778632477938Ratregion
2315142D1Mco10919613247778632477982Ratregion
2315144D1Mco11519313271591432716107Ratregion
2315146D1Mco12020613291597532916181Ratregion
2315148D1Mco11215013256248432562634Ratregion
2315150D1Mco10417913228523332285412Ratregion
2315152D1Mco11016613250438532504551Ratregion
2315154D1Mco12117313294091832941007Ratregion
2315154D1Mco12117313294091832941091Ratregion
2315156D1Mco11316713260079432600959Ratregion
2315158D1Mco12419113298981832990009Ratregion
2315160D1Mco12916413303865033038814Ratregion
2315162D1Mco10218413224973532249921Ratregion
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Position Markers

Flank 1: (D1Rat246)
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,244,390 - 2,244,622 (+)MAPPER
Rnor_6.011,868,045 - 1,868,274NCBI
Rnor_5.013,564,603 - 3,564,832UniSTS
RGSC_v3.412,436,832 - 2,437,062RGD
RGSC_v3.412,436,833 - 2,437,062UniSTS
RGSC_v3.112,436,833 - 2,437,062RGD
Celera1793,147 - 793,378UniSTS
RH 3.4 Map116.7RGD
RH 3.4 Map116.7UniSTS
SHRSP x BN Map10.04UniSTS
SHRSP x BN Map10.04RGD
Cytogenetic Map1p13UniSTS
Peak: (D1Rat246)
Rat AssemblyChrPosition (strand)Source
mRatBN7.212,244,390 - 2,244,622 (+)MAPPER
Rnor_6.011,868,045 - 1,868,274NCBI
Rnor_5.013,564,603 - 3,564,832UniSTS
RGSC_v3.412,436,832 - 2,437,062RGD
RGSC_v3.412,436,833 - 2,437,062UniSTS
RGSC_v3.112,436,833 - 2,437,062RGD
Celera1793,147 - 793,378UniSTS
RH 3.4 Map116.7RGD
RH 3.4 Map116.7UniSTS
SHRSP x BN Map10.04UniSTS
SHRSP x BN Map10.04RGD
Cytogenetic Map1p13UniSTS
Flank 2: (D1Rat15)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2143,432,873 - 43,433,040 (+)MAPPER
Rnor_6.0143,724,410 - 43,724,576NCBI
Rnor_5.0145,053,607 - 45,053,773UniSTS
RGSC_v3.4137,798,853 - 37,799,020RGD
RGSC_v3.4137,798,854 - 37,799,020UniSTS
RGSC_v3.1137,801,798 - 37,801,965RGD
SHRSP x BN Map120.45RGD
SHRSP x BN Map120.45UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)11532110019121980Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
731169Bp153Blood pressure QTL 1530.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13105084033492143Rat
2316649Bp344Blood pressure QTL 344arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13224973533038814Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type backcross  
qtl_general number of animals used: 187 1599317
qtl_general inducing agent and dosage: single dosage of DMBA, 65mg/kg 1599317
qtl_general allele responsible: cryptic WKY allele increases tumor number 1599317
qtl_general Gender: 53-58 days old virgin females 1599317