Taar1 (trace-amine-associated receptor 1) - Rat Genome Database

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Gene: Taar1 (trace-amine-associated receptor 1) Rattus norvegicus
Analyze
Symbol: Taar1
Name: trace-amine-associated receptor 1
RGD ID: 621621
Description: Predicted to enable trace-amine receptor activity. Involved in positive regulation of cAMP-mediated signaling. Predicted to be located in plasma membrane. Orthologous to human TAAR1 (trace amine associated receptor 1); INTERACTS WITH (S)-amphetamine; 17beta-estradiol; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: taR-1; Tar1; trace amine associated receptor 1; trace amine receptor 1; trace amine-associated receptor 1; Trar1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,517,742 - 21,518,740 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,517,258 - 21,532,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,297,006 - 21,298,004 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0127,297,051 - 27,298,049 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0121,494,378 - 21,495,376 (-)NCBIRnor_WKY
Rnor_6.0122,595,477 - 22,596,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,595,477 - 22,596,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,070,405 - 24,071,403 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,045,364 - 22,046,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1122,048,308 - 22,049,307 (-)NCBI
Celera120,260,820 - 20,261,818 (-)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Amphetamine, 3,4-methylenedioxymethamphetamine, lysergic acid diethylamide, and metabolites of the catecholamine neurotransmitters are agonists of a rat trace amine receptor. Bunzow JR, etal., Mol Pharmacol 2001 Dec;60(6):1181-8.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Trace amine-associated receptor 1 activation silences GSK3beta signaling of TAAR1 and D2R heteromers. Harmeier A, etal., Eur Neuropsychopharmacol. 2015 Nov;25(11):2049-61. doi: 10.1016/j.euroneuro.2015.08.011. Epub 2015 Aug 20.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. GOA pipeline RGD automated data pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11459929   PMID:15718104   PMID:15955414   PMID:21073468   PMID:22442117   PMID:23072560   PMID:27544651   PMID:28123023   PMID:35346791  


Genomics

Comparative Map Data
Taar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2121,517,742 - 21,518,740 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,517,258 - 21,532,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,297,006 - 21,298,004 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0127,297,051 - 27,298,049 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0121,494,378 - 21,495,376 (-)NCBIRnor_WKY
Rnor_6.0122,595,477 - 22,596,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,595,477 - 22,596,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,070,405 - 24,071,403 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,045,364 - 22,046,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1122,048,308 - 22,049,307 (-)NCBI
Celera120,260,820 - 20,261,818 (-)NCBICelera
Cytogenetic Map1p12NCBI
TAAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386132,643,312 - 132,659,182 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6132,643,312 - 132,659,182 (-)EnsemblGRCh38hg38GRCh38
GRCh376132,964,451 - 132,980,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366133,007,816 - 133,008,835 (-)NCBINCBI36Build 36hg18NCBI36
Build 346133,007,815 - 133,008,835NCBI
Celera6133,712,961 - 133,713,980 (-)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6130,541,047 - 130,542,066 (-)NCBIHuRef
CHM1_16133,229,781 - 133,230,800 (-)NCBICHM1_1
T2T-CHM13v2.06133,838,279 - 133,854,151 (-)NCBIT2T-CHM13v2.0
Taar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391023,796,304 - 23,797,302 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1023,796,254 - 23,797,367 (+)EnsemblGRCm39 Ensembl
GRCm381023,920,406 - 23,921,404 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1023,920,356 - 23,921,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv371023,640,212 - 23,641,210 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361023,609,822 - 23,610,820 (+)NCBIMGSCv36mm8
Celera1024,853,896 - 24,854,894 (+)NCBICelera
Cytogenetic Map10A4NCBI
Taar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543613,205,777 - 13,206,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543613,204,876 - 13,207,928 (-)NCBIChiLan1.0ChiLan1.0
LOC100977974
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16134,529,110 - 134,530,455 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6134,529,418 - 134,530,437 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06130,420,169 - 130,436,032 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
TAAR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha126,633,763 - 26,634,809 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,557,860 - 25,558,906 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,557,860 - 25,558,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,603,937 - 25,604,983 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,502,722 - 25,503,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,765,932 - 25,766,978 (-)NCBIUU_Cfam_GSD_1.0
Taar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946120,896,284 - 120,897,306 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936560675,500 - 676,522 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936560675,500 - 676,522 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1131,037,826 - 31,050,816 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,568,566 - 34,570,037 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11340,874,400 - 40,891,408 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1340,889,682 - 40,890,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604013,078,475 - 13,081,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Taar1
6 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:24
Interacting mature miRNAs:25
Transcripts:ENSRNOT00000021510
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat

Markers in Region
Taar1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2121,517,808 - 21,518,634 (+)MAPPERmRatBN7.2
Rnor_6.0122,595,544 - 22,596,369NCBIRnor6.0
Rnor_5.0124,070,472 - 24,071,297UniSTSRnor5.0
RGSC_v3.4122,045,431 - 22,046,256UniSTSRGSC3.4
Celera120,260,887 - 20,261,712UniSTS
Cytogenetic Map1p12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system nervous system reproductive system respiratory system
High
Medium
Low 20 20 20 8
Below cutoff 2 4 5 4 1 4 1 5 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000021510   ⟹   ENSRNOP00000021510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl121,517,258 - 21,520,623 (-)Ensembl
Rnor_6.0 Ensembl122,595,477 - 22,596,475 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097590   ⟹   ENSRNOP00000076392
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl121,517,258 - 21,532,084 (-)Ensembl
RefSeq Acc Id: NM_134328   ⟹   NP_599155
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2121,517,742 - 21,518,740 (-)NCBI
Rnor_6.0122,595,477 - 22,596,475 (-)NCBI
Rnor_5.0124,070,405 - 24,071,403 (-)NCBI
RGSC_v3.4122,045,364 - 22,046,362 (-)RGD
Celera120,260,820 - 20,261,818 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_599155 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAK71237 (Get FASTA)   NCBI Sequence Viewer  
  AAL65137 (Get FASTA)   NCBI Sequence Viewer  
  AAV70127 (Get FASTA)   NCBI Sequence Viewer  
  EDL87747 (Get FASTA)   NCBI Sequence Viewer  
  Q923Y9 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_599155   ⟸   NM_134328
- UniProtKB: Q923Y9 (UniProtKB/Swiss-Prot),   A0A0G2JSP2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000021510   ⟸   ENSRNOT00000021510
RefSeq Acc Id: ENSRNOP00000076392   ⟸   ENSRNOT00000097590
Protein Domains
G_PROTEIN_RECEP_F1_2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q923Y9-F1-model_v2 AlphaFold Q923Y9 1-332 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621621 AgrOrtholog
BioCyc Gene G2FUF-62079 BioCyc
Ensembl Genes ENSRNOG00000016073 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000021510 ENTREZGENE
  ENSRNOP00000021510.1 UniProtKB/TrEMBL
  ENSRNOP00000076392.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021510 ENTREZGENE
  ENSRNOT00000021510.3 UniProtKB/TrEMBL
  ENSRNOT00000097590.1 UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAAR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TAAR_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:113914 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 113914 ENTREZGENE
Pfam 7tm_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Taar1 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRACEAMINE1R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRACEAMINER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JSP2 ENTREZGENE, UniProtKB/TrEMBL
  Q923Y9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q5QD26 UniProtKB/Swiss-Prot
  Q8VHQ5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-02-23 Taar1  trace-amine-associated receptor 1  Trar1  trace amine receptor 1  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2004-09-10 Trar1  trace amine receptor 1  Tar1    Symbol updated 1299863 APPROVED
2002-08-07 Tar1        Symbol and Name status set to provisional 70820 PROVISIONAL