TAAR1 (trace amine associated receptor 1) - Rat Genome Database

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Gene: TAAR1 (trace amine associated receptor 1) Chlorocebus sabaeus
Analyze
Symbol: TAAR1
Name: trace amine associated receptor 1
RGD ID: 18412478
Description: ENCODES a protein that exhibits G protein-coupled amine receptor activity (inferred); G protein-coupled receptor activity (inferred); trace-amine receptor activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of cAMP/PKA signal transduction (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN endomembrane system (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: trace amine-associated receptor 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11340,874,400 - 40,891,408 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1340,889,682 - 40,890,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604013,078,475 - 13,081,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TAAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11340,874,400 - 40,891,408 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1340,889,682 - 40,890,698 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604013,078,475 - 13,081,371 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TAAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386132,643,312 - 132,659,182 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6132,643,312 - 132,659,182 (-)EnsemblGRCh38hg38GRCh38
GRCh376132,964,451 - 132,980,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366133,007,816 - 133,008,835 (-)NCBINCBI36Build 36hg18NCBI36
Build 346133,007,815 - 133,008,835NCBI
Celera6133,712,961 - 133,713,980 (-)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6130,541,047 - 130,542,066 (-)NCBIHuRef
CHM1_16133,229,781 - 133,230,800 (-)NCBICHM1_1
T2T-CHM13v2.06133,838,279 - 133,854,151 (-)NCBIT2T-CHM13v2.0
Taar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391023,796,304 - 23,797,302 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1023,796,254 - 23,797,367 (+)EnsemblGRCm39 Ensembl
GRCm381023,920,406 - 23,921,404 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1023,920,356 - 23,921,469 (+)EnsemblGRCm38mm10GRCm38
MGSCv371023,640,212 - 23,641,210 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361023,609,822 - 23,610,820 (+)NCBIMGSCv36mm8
Celera1024,853,896 - 24,854,894 (+)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1011.39NCBI
Taar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,336,978 - 23,337,976 (-)NCBIGRCr8
mRatBN7.2121,517,742 - 21,518,740 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,517,258 - 21,532,084 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,297,006 - 21,298,004 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,297,051 - 27,298,049 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,494,378 - 21,495,376 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,595,477 - 22,596,475 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,595,477 - 22,596,475 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,070,405 - 24,071,403 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,045,364 - 22,046,362 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1122,048,308 - 22,049,307 (-)NCBI
Celera120,260,820 - 20,261,818 (-)NCBICelera
Cytogenetic Map1p12NCBI
Taar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543613,205,777 - 13,206,793 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543613,204,876 - 13,207,928 (-)NCBIChiLan1.0ChiLan1.0
LOC100977974
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25152,626,456 - 152,642,289 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16150,533,544 - 150,549,377 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06130,420,169 - 130,436,032 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16134,529,110 - 134,530,455 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6134,529,418 - 134,530,437 (-)Ensemblpanpan1.1panPan2
TAAR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha126,633,763 - 26,634,809 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,557,860 - 25,558,906 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,557,860 - 25,558,906 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,603,937 - 25,604,983 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,502,722 - 25,503,768 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,765,932 - 25,766,978 (-)NCBIUU_Cfam_GSD_1.0
Taar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946120,896,284 - 120,897,306 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936560675,500 - 676,522 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936560675,500 - 676,522 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1131,037,826 - 31,050,816 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,568,566 - 34,570,037 (+)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
56 20 17 31 31 42 6

Sequence


Ensembl Acc Id: ENSCSAT00000018351   ⟹   ENSCSAP00000017811
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1340,889,682 - 40,890,698 (+)Ensembl
RefSeq Acc Id: XM_038000885   ⟹   XP_037856813
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366604013,078,475 - 13,081,371 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037856813 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017811.1
Ensembl Acc Id: ENSCSAP00000017811   ⟸   ENSCSAT00000018351
RefSeq Acc Id: XP_037856813   ⟸   XM_038000885
- UniProtKB: A0A0D9SAC2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018351.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  TAAR UniProtKB/TrEMBL
  TAAR1 UniProtKB/TrEMBL
  TAAR_fam UniProtKB/TrEMBL
NCBI Gene TAAR1 ENTREZGENE
PANTHER HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  TRACE AMINE-ASSOCIATED RECEPTOR 1 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  TRACEAMINE1R UniProtKB/TrEMBL
  TRACEAMINER UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
SMART 7TM_GPCR_Srsx UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A0D9SAC2 ENTREZGENE, UniProtKB/TrEMBL