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Gene: Ccdc28a (coiled-coil domain containing 28A) Rattus norvegicus

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Symbol:

Ccdc28a

Name:

coiled-coil domain containing 28A

RGD ID:

1310326

Description:

Orthologous to human CCDC28A (coiled-coil domain containing 28A); INTERACTS WITH 17beta-estradiol; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

chemokine C-C motif receptor-like 1 adjacent; coiled-coil domain-containing protein 28A; LOC361454; MGC116395; RGD1310326; similar to chromosome 6 open reading frame 80

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	14,677,451 - 14,692,729 (-)	NCBI		GRCr8
mRatBN7.2	1	12,857,668 - 12,872,944 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	12,857,666 - 12,873,003 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	12,629,455 - 12,644,028 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	18,631,379 - 18,645,952 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	12,837,959 - 12,852,996 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	13,384,153 - 13,395,643 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	13,384,156 - 13,395,370 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	15,072,108 - 15,083,495 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	13,269,164 - 13,284,200 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	13,269,225 - 13,284,298 (-)	NCBI
Celera	1	11,314,407 - 11,329,332 (-)	NCBI		Celera
Cytogenetic Map	1	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc28a	Rat	Familial Behcet-Like Autoinflammatory Syndrome		ISO	CCDC28A (Homo sapiens)	8554872	ClinVar Annotator: match by term: Autoinflammatory syndrome more ...	ClinVar	PMID:25741868
Ccdc28a	Rat	myoepithelioma		ISO	CCDC28A (Homo sapiens)	8554872	ClinVar Annotator: match by term: Myoepithelial tumor	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc28a	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Ccdc28a (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CCDC28A mRNA	CTD	PMID:36331819
Ccdc28a	Rat	1,2-dichloroethane	decreases expression	ISO	Ccdc28a (Mus musculus)	6480464	ethylene dichloride results in decreased expression of CCDC28A mRNA	CTD	PMID:28189721 and PMID:28960355
Ccdc28a	Rat	1,2-dimethylhydrazine	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of CCDC28A mRNA	CTD	PMID:22206623
Ccdc28a	Rat	17beta-estradiol	increases expression	EXP		6480464	Estradiol results in increased expression of CCDC28A mRNA	CTD	PMID:32145629
Ccdc28a	Rat	17beta-estradiol	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	Estradiol results in decreased expression of CCDC28A mRNA	CTD	PMID:31614463
Ccdc28a	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Ccdc28a (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of CCDC28A mRNA	CTD	PMID:21570461
Ccdc28a	Rat	2-hydroxypropanoic acid	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	Lactic Acid results in decreased expression of CCDC28A mRNA	CTD	PMID:30851411
Ccdc28a	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of CCDC28A mRNA	CTD	PMID:30047161
Ccdc28a	Rat	acetamide	decreases expression	EXP		6480464	acetamide results in decreased expression of CCDC28A mRNA	CTD	PMID:31881176
Ccdc28a	Rat	aflatoxin B1	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	Aflatoxin B1 results in decreased expression of CCDC28A mRNA	CTD	PMID:22100608
Ccdc28a	Rat	all-trans-retinoic acid	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Tretinoin results in increased expression of CCDC28A mRNA	CTD	PMID:23724009
Ccdc28a	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of CCDC28A mRNA	CTD	PMID:30047161
Ccdc28a	Rat	arsenite(3-)	multiple interactions	ISO	CCDC28A (Homo sapiens)	6480464	arsenite promotes the reaction [G3BP1 protein binds to CCDC28A mRNA]	CTD	PMID:32406909
Ccdc28a	Rat	benzo[a]pyrene	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of CCDC28A mRNA	CTD	PMID:19770486
Ccdc28a	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of CCDC28A mRNA	CTD	PMID:25181051 and PMID:32145629
Ccdc28a	Rat	bisphenol F	decreases expression	ISO	Ccdc28a (Mus musculus)	6480464	bisphenol F results in decreased expression of CCDC28A mRNA	CTD	PMID:38685157
Ccdc28a	Rat	cadmium atom	multiple interactions	ISO	Ccdc28a (Mus musculus)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC28A mRNA	CTD	PMID:37325564
Ccdc28a	Rat	cadmium dichloride	multiple interactions	ISO	Ccdc28a (Mus musculus)	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CCDC28A mRNA	CTD	PMID:37325564
Ccdc28a	Rat	carbon nanotube	decreases expression	ISO	Ccdc28a (Mus musculus)	6480464	Nanotubes more ...	CTD	PMID:25554681
Ccdc28a	Rat	CGP 52608	multiple interactions	ISO	CCDC28A (Homo sapiens)	6480464	CGP 52608 promotes the reaction [RORA protein binds to CCDC28A gene]	CTD	PMID:28238834
Ccdc28a	Rat	clotrimazole	decreases expression	EXP		6480464	Clotrimazole results in decreased expression of CCDC28A mRNA	CTD	PMID:30047161
Ccdc28a	Rat	DDE	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	Dichlorodiphenyl Dichloroethylene results in decreased expression of CCDC28A mRNA	CTD	PMID:38568856
Ccdc28a	Rat	dicrotophos	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	dicrotophos results in decreased expression of CCDC28A mRNA	CTD	PMID:28302478
Ccdc28a	Rat	epoxiconazole	decreases expression	ISO	Ccdc28a (Mus musculus)	6480464	epoxiconazole results in decreased expression of CCDC28A mRNA	CTD	PMID:35436446
Ccdc28a	Rat	ethanol	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	Ethanol results in increased expression of CCDC28A mRNA	CTD	PMID:30319688
Ccdc28a	Rat	ethyl methanesulfonate	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Ethyl Methanesulfonate results in increased expression of CCDC28A mRNA	CTD	PMID:23649840
Ccdc28a	Rat	formaldehyde	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Formaldehyde results in increased expression of CCDC28A mRNA	CTD	PMID:23649840
Ccdc28a	Rat	glafenine	decreases expression	EXP		6480464	Glafenine results in decreased expression of CCDC28A mRNA	CTD	PMID:24136188
Ccdc28a	Rat	graphene oxide	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	graphene oxide results in increased expression of CCDC28A protein	CTD	PMID:33219560 and PMID:33219562
Ccdc28a	Rat	hydrogen peroxide	affects expression	ISO	CCDC28A (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of CCDC28A mRNA	CTD	PMID:20044591
Ccdc28a	Rat	indole-3-methanol	affects expression	EXP		6480464	indole-3-carbinol affects the expression of CCDC28A mRNA	CTD	PMID:21396975
Ccdc28a	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of CCDC28A mRNA	CTD	PMID:30047161
Ccdc28a	Rat	methyl methanesulfonate	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Methyl Methanesulfonate results in increased expression of CCDC28A mRNA	CTD	PMID:23649840
Ccdc28a	Rat	paracetamol	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Acetaminophen results in increased expression of CCDC28A mRNA	CTD	PMID:22230336
Ccdc28a	Rat	perfluorooctane-1-sulfonic acid	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in increased expression of CCDC28A mRNA	CTD	PMID:25812627
Ccdc28a	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Ccdc28a (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of CCDC28A mRNA and [perfluorooctane sulfonic acid co-treated with Pectins] results in increased expression of CCDC28A mRNA	CTD	PMID:36331819
Ccdc28a	Rat	perfluorooctanoic acid	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	perfluorooctanoic acid results in increased expression of CCDC28A mRNA	CTD	PMID:25812627
Ccdc28a	Rat	phenobarbital	multiple interactions	ISO	Ccdc28a (Mus musculus)	6480464	NR1I3 protein affects the reaction [Phenobarbital results in increased expression of CCDC28A mRNA]	CTD	PMID:19482888
Ccdc28a	Rat	phenobarbital	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	Phenobarbital results in increased expression of CCDC28A mRNA	CTD	PMID:19482888
Ccdc28a	Rat	pirinixic acid	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	pirinixic acid results in increased expression of CCDC28A mRNA	CTD	PMID:18301758 and PMID:23811191
Ccdc28a	Rat	rac-lactic acid	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	Lactic Acid results in decreased expression of CCDC28A mRNA	CTD	PMID:30851411
Ccdc28a	Rat	sodium arsenite	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	sodium arsenite results in increased expression of CCDC28A mRNA	CTD	PMID:38568856
Ccdc28a	Rat	sodium arsenite	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	sodium arsenite results in decreased expression of CCDC28A mRNA	CTD	PMID:34032870
Ccdc28a	Rat	Soman	decreases expression	EXP		6480464	Soman results in decreased expression of CCDC28A mRNA	CTD	PMID:19281266
Ccdc28a	Rat	sulfadimethoxine	decreases expression	EXP		6480464	Sulfadimethoxine results in decreased expression of CCDC28A mRNA	CTD	PMID:30047161
Ccdc28a	Rat	temozolomide	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Temozolomide results in increased expression of CCDC28A mRNA	CTD	PMID:31758290
Ccdc28a	Rat	tetrachloromethane	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	Carbon Tetrachloride results in increased expression of CCDC28A mRNA	CTD	PMID:17484886
Ccdc28a	Rat	triphenyl phosphate	affects expression	ISO	CCDC28A (Homo sapiens)	6480464	triphenyl phosphate affects the expression of CCDC28A mRNA	CTD	PMID:37042841
Ccdc28a	Rat	triptonide	increases expression	ISO	Ccdc28a (Mus musculus)	6480464	triptonide results in increased expression of CCDC28A mRNA	CTD	PMID:33045310
Ccdc28a	Rat	tunicamycin	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Tunicamycin results in increased expression of CCDC28A mRNA	CTD	PMID:22378314
Ccdc28a	Rat	urethane	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Urethane results in increased expression of CCDC28A mRNA	CTD	PMID:28818685
Ccdc28a	Rat	valdecoxib	increases expression	EXP		6480464	valdecoxib results in increased expression of CCDC28A mRNA	CTD	PMID:24136188
Ccdc28a	Rat	valproic acid	decreases expression	ISO	CCDC28A (Homo sapiens)	6480464	Valproic Acid results in decreased expression of CCDC28A mRNA	CTD	PMID:23179753
Ccdc28a	Rat	valproic acid	increases expression	ISO	CCDC28A (Homo sapiens)	6480464	Valproic Acid results in increased expression of CCDC28A mRNA	CTD	PMID:22083351 and PMID:29154799
Ccdc28a	Rat	valproic acid	affects expression	ISO	CCDC28A (Homo sapiens)	6480464	Valproic Acid affects the expression of CCDC28A mRNA	CTD	PMID:25979313

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ccdc28a	Rat	protein binding	enables	ISO	CCDC28A (Homo sapiens)	1624291	UniProtKB:P15173 more ...	RGD	PMID:25416956 more ...

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:12477932

Ccdc28a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	14,677,451 - 14,692,729 (-)	NCBI		GRCr8
mRatBN7.2	1	12,857,668 - 12,872,944 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	12,857,666 - 12,873,003 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	12,629,455 - 12,644,028 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	18,631,379 - 18,645,952 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	12,837,959 - 12,852,996 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	13,384,153 - 13,395,643 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	13,384,156 - 13,395,370 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	15,072,108 - 15,083,495 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	13,269,164 - 13,284,200 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	13,269,225 - 13,284,298 (-)	NCBI
Celera	1	11,314,407 - 11,329,332 (-)	NCBI		Celera
Cytogenetic Map	1	p12	NCBI

CCDC28A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	138,773,769 - 138,793,319 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	138,773,769 - 138,793,319 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	139,094,906 - 139,114,456 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	139,136,350 - 139,156,149 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	139,136,349 - 139,156,147	NCBI
Celera	6	139,834,761 - 139,854,557 (+)	NCBI		Celera
Cytogenetic Map	6	q24.1	NCBI
HuRef	6	136,656,063 - 136,675,758 (+)	NCBI		HuRef
CHM1_1	6	139,357,677 - 139,377,457 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	139,962,307 - 139,981,863 (+)	NCBI		T2T-CHM13v2.0

Ccdc28a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	18,089,424 - 18,110,940 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	18,089,424 - 18,110,746 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	18,213,676 - 18,235,805 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	18,213,676 - 18,234,998 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	17,933,491 - 17,954,787 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	17,906,343 - 17,924,394 (-)	NCBI		MGSCv36	mm8
MGSCv36	10	18,092,971 - 18,111,028 (-)	NCBI		MGSCv36	mm8
Celera	10	18,112,973 - 18,144,756 (-)	NCBI		Celera
Cytogenetic Map	10	A3	NCBI
cM Map	10	7.53	NCBI

Ccdc28a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	20,846,227 - 20,873,552 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	20,849,493 - 20,875,284 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC28A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	158,740,208 - 158,759,522 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	156,637,791 - 156,657,108 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	136,533,841 - 136,553,303 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	140,619,716 - 140,638,830 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	140,619,716 - 140,638,830 (+)	Ensembl	panpan1.1		panPan2

CCDC28A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	31,044,102 - 31,058,173 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	31,044,126 - 31,057,800 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	31,920,945 - 31,935,141 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	31,207,239 - 31,221,442 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	31,207,395 - 31,221,439 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	31,084,696 - 31,098,895 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	30,966,784 - 30,981,007 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	31,276,492 - 31,290,694 (+)	NCBI		UU_Cfam_GSD_1.0

CCDC28A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	25,647,000 - 25,663,273 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	25,646,997 - 25,663,277 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	28,782,282 - 28,798,563 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC28A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	34,596,584 - 34,615,633 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666040	6,769,559 - 6,788,468 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc28a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624753	15,157,391 - 15,185,029 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624753	15,157,509 - 15,185,253 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Ccdc28a
132 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	73
Count of miRNA genes:	65
Interacting mature miRNAs:	72
Transcripts:	ENSRNOT00000061756
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5925874	115540829	Rat
1578650	Bmd6	Bone mineral density QTL 6	12.2		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	1	509108	43284926	Rat
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	24744506	Rat
1578651	Bmd7	Bone mineral density QTL 7	14.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	1	509108	43284926	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	11481312	82174945	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
7421626	Bp360	Blood pressure QTL 360		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	4393289	49393289	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	1	32356093	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11481312	82174945	Rat
2298546	Neuinf4	Neuroinflammation QTL 4	5.1		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	1	1	28736750	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11481312	75088344	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11481312	82174945	Rat
2317755	Glom22	Glomerulus QTL 22	3.8		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	11481482	32355910	Rat
1578756	Iddm22	Insulin dependent diabetes mellitus QTL 22	2.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	11835181	56835181	Rat
631508	Sald1	Serum aldosterone level QTL 1	3.7		blood aldosterone amount (VT:0005346)	serum aldosterone level (CMO:0000487)	1	9856001	54856001	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	1	32356093	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	5925877	24697545	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11481312	82174945	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11481312	82174945	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	2244390	43433040	Rat
1578669	Bss9	Bone structure and strength QTL 9	6.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	1	509108	43284926	Rat
2302038	Pia31	Pristane induced arthritis QTL 31	5.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	1	10992065	55992065	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	1	32356093	Rat

RH129522

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	12,857,764 - 12,857,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	13,384,250 - 13,384,440	NCBI	Rnor6.0
Rnor_5.0	1	15,072,205 - 15,072,395	UniSTS	Rnor5.0
RGSC_v3.4	1	13,269,261 - 13,269,451	UniSTS	RGSC3.4
Celera	1	11,314,504 - 11,314,694	UniSTS
RH 3.4 Map	1	132.5	UniSTS
Cytogenetic Map	1	p12	UniSTS

RH131595

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	12,874,395 - 12,874,613 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	13,397,060 - 13,397,277	NCBI	Rnor6.0
Rnor_6.0	1	11,843,823 - 11,844,040	NCBI	Rnor6.0
Rnor_5.0	1	15,085,015 - 15,085,232	UniSTS	Rnor5.0
Rnor_5.0	1	13,438,014 - 13,438,231	UniSTS	Rnor5.0
RGSC_v3.4	1	13,285,891 - 13,286,108	UniSTS	RGSC3.4
Celera	1	11,331,022 - 11,331,239	UniSTS
RH 3.4 Map	1	131.3	UniSTS
Cytogenetic Map	1	p12	UniSTS

RH135233

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	12,871,665 - 12,871,848 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	13,394,330 - 13,394,512	NCBI	Rnor6.0
Rnor_6.0	1	11,841,092 - 11,841,274	NCBI	Rnor6.0
Rnor_5.0	1	15,082,285 - 15,082,467	UniSTS	Rnor5.0
Rnor_5.0	1	13,435,283 - 13,435,465	UniSTS	Rnor5.0
RGSC_v3.4	1	13,283,160 - 13,283,342	UniSTS	RGSC3.4
Celera	1	11,328,292 - 11,328,474	UniSTS
RH 3.4 Map	1	131.9	UniSTS
Cytogenetic Map	1	p12	UniSTS

BE118601

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	12,872,877 - 12,873,067 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	13,395,542 - 13,395,731	NCBI	Rnor6.0
Rnor_6.0	1	11,842,304 - 11,842,493	NCBI	Rnor6.0
Rnor_5.0	1	15,083,497 - 15,083,686	UniSTS	Rnor5.0
Rnor_5.0	1	13,436,495 - 13,436,684	UniSTS	Rnor5.0
RGSC_v3.4	1	13,284,372 - 13,284,561	UniSTS	RGSC3.4
Celera	1	11,329,504 - 11,329,693	UniSTS
RH 3.4 Map	1	131.9	UniSTS
Cytogenetic Map	1	p12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001037789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC100268	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000085519 ⟹ ENSRNOP00000069590

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	12,857,694 - 12,872,748 (-)	Ensembl
Rnor_6.0 Ensembl	1	13,384,156 - 13,395,370 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096473 ⟹ ENSRNOP00000083034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	12,857,666 - 12,869,556 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106151 ⟹ ENSRNOP00000080779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	12,862,496 - 12,873,003 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112538 ⟹ ENSRNOP00000097209

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	12,857,668 - 12,873,003 (-)	Ensembl

RefSeq Acc Id:

NM_001037789 ⟹ NP_001032878

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,677,451 - 14,692,489 (-)	NCBI
mRatBN7.2	1	12,857,668 - 12,872,706 (-)	NCBI
Rnor_6.0	1	13,384,153 - 13,395,370 (-)	NCBI
Rnor_5.0	1	15,072,108 - 15,083,495 (-)	NCBI
RGSC_v3.4	1	13,269,164 - 13,284,200 (-)	RGD
Celera	1	11,314,407 - 11,329,332 (-)	RGD

Sequence:

show sequence

GGCGACCTGAGTGGGCTCTTGCTGCAACTCTGGCAGAGGCTTTAAACTCTCTCTTACCTTTTCCAGACGAGGAAGGGTAACCACAGCCCTTTCTTCCTTCGGTCTTAATGAAGCTGGTATTGATGCAA
CAAAGATTTTAAGACAATGGAAGAGCGGAAAGCAAAGAGGAAGAGTCCCAAGTCCTTCAGTGCCCACTCTACTCAGGTTGTTAATGCCAAAAAAAATACCATCCCAGCTAGCAAAAGCACAGGGTTTT
CAAATCCCGCGTCGCAGTCAACTTCCCAGAGGCCAAAGTTAAAAAGGGTGACGAAAGAAAAGAACAAACCTCCAGGAGGAGAAGGGAAGGGTGCCCAGGCCACACCCATCCAGCACTCCTTCCTCACC
GACGTCTCTGATGTCCAGGAGATGGAGCGCGGGCTCCTTAGTCTGCTGAATGATTTCCACTCAGGAAAGCTGCAGGCGTTTGGAAATGAATGTTCCATAGAACAGATGGAACATGTCCGGGGAATGCA
GGAAAAATTAGCTCGCTTGAATTTGGAGCTCTACGGGGAGTTAGAAGAACTTCCGGAGGATAAGCGGAAAGCAGTCAGTGACGCCAACCTGGACAGGCTGCTGTCTGACTTAGAAGAATTGAATTCTT
CTATACAGAAACTGCATTTGGCCGATGCGCAGGACGTTCCCAGTGCACCCAGCAGCTAATGCGGCCCGCAGCCTGCAGCCTGCTCTGAGACTTGCAGGGAAGCAGCAGTCATTACTTCCAGCCCAGTC
CTGTGGCAGAATCATCTCCCGCAACAGACTCTCGAGTCACGAGAATGCAAGTGCAGTGATCATGTCCACACGCCGCTTCCAGTCCATGTGCTCGCTGTACTCCACCGCCGGGGAGGCCGTGGCCCGCC
TGTAGGTCTCCTCGGGAAGTGGGACACAGAGTTGTGCTGCTATGCTTTCTTTTGTTGCCTTAAGGGTTATACTTGAAATGCATCGTGCTAAACGTTGTCGGGCTGAAGGATTCGTCCTTGCCATGGCC
GCACTGACCCAGTGCCGGTCACACGGTGGTGGTGCACAGGTGTCCTGTAGCGGTCCAGCTTCAGTTTACGTCAGACAATCAGTACACACGCAGGTGTGTTTCCCAATGGCCAGTGACAAATGTTTAAT
AAGTACTCGTGAGATTTGCTATTTTTAATAAAGCAATTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006227660 ⟹ XP_006227722

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,682,273 - 14,692,526 (-)	NCBI
mRatBN7.2	1	12,860,441 - 12,872,751 (-)	NCBI
Rnor_6.0	1	13,387,957 - 13,395,430 (-)	NCBI
Rnor_5.0	1	15,072,108 - 15,083,495 (-)	NCBI

Sequence:

show sequence

GCCCCGATTACATCACTTCCGTAAACAAAGGGCGCTTGCCCTGGGTCTGTGACCCAGTCTGGCGACCTGAGTGGGCTCTTGCTGCAACTCTGGCAGAGGCTTTAAACTCTCTCTTACCTTTTCCAGAC
GAGGAAGGGTAACCACAGCCCTTTCTTCCTTCGGTCTTAATGAAGCTGGTATTGATGCAACAAAGATTTTAAGACAATGGAAGAGCGGAAAGCAAAGAGGAAGAGTCCCAAGTCCTTCAGTGCCCACT
CTACTCAGGTTGTTAATGCCAAAAAAAATACCATCCCAGCTAGCAAAAGCACAGGGTTTTCAAATCCCGCGTCGCAGTCAACTTCCCAGAGGCCAAAGTTAAAAAGGGTGACGAAAGAAAAGAACAAA
CCTCCAGGAGGAGAAGGGAAGGGTGCCCAGGCCACACCCATCCAGCACTCCTTCCTCACCGACGTCTCTGATGTCCAGGAGATGGAGCGCGGGCTCCTTAGTCTGCTGAATGATTTCCACTCAGGAAA
GCTGCAGGCGTTTGGAAATGAATGTTCCATAGAACAGATGGAACATGTCCGGGGAATGCAGGAAAAATTAGCTCGCTTGAATTTGGAGCTCTACGGGGAGTTAGAAGAACTTCCGGAGGATAAGCGGA
AAGCAGTCAGTGACGCCAACCTGGACAGGCTGCTGTCTGACGGGGCTGAAAAGCTGACTCAGCGTCTAAAAGTACTTGCTGCTCTTGTAGAAGACCCAGATTCTGTTCCCAGCACCCACATGGCGGCC
CTCGACCCTCTATAACTTCAGTTCCGGGGATCTGAAGCCATCTCCTGGCCTCTGAGGGCACCAGGCACACATACGGTGCACGTGCTTACATTTGGGCAGAGCCTACATACCTATAAAATAAAAATAAA
CATCTAAACCCTTCTTTAGGGAGCTAGGGAGATGGCTCAGTCAGTAAAGTTCTTGTCACGGCAGAGGGCCTGAGTTCAGATCCTCAGCCCCTGTGCCAAGTGCCTGTGACCTCAGCTCTAGAGAAGCA
GAGCCAAGCAGGTCTGAGGATCACAGGCCTCCCTTGCTTGTTGAGTCTGTGAGCTTCAGGTAGGTGAGAGATCCCATGTCAAAGAAAGGAGGTGCAGAACAACTAAGGAGGACACCCAACGCCGCTGG
CTTCCCTACGTGCAGGCACACTGGCTCGTATGCATACGCAAACATTTTATAGAACAAAGGGGGGTAAATAAAAACTGACCCCAGTGTGTTTAGCTTCATGTTCACCAGAGACAAGAGAGCTTGTTTCT
GCAATTTTTTTCTTTTTCTCTTTCATTTCTTTTTTTTTTTTTTTTTTTTTTTGGAAAAGTAAATATAAGGCAACTGTCCGCCCACACTTTAAAAACTTTATGCCTAGATTAGCAGTGCATTCTTGTAA
TCCCAGCATTTGGGAAGGAGGAAAAGGAGTTCAAGGCCAGCCTGGGCTATATGAGACCTCTCCCAAAAAAACAAACAAAAAGCCCTTCGAGCCTGTACTTTTAAGTGTCAACTCTGCCATATATTATT
TGACCTCACAAGTGTTCAGTTCAGTCTTCTGCTCCATATTTCTTAAATATAAGTTTAATTTGTGTACCTTTAGAGCATTTCGGAAATAAATTTTAAACTGGGAGGTATAGTGCGAGGCTTTATCAGTT
GTACTTGGTGACACTGGACAGTCTAGGTAACTTATCCTGGAGATTAAGCCAAGGGCAGACAAGTACTCCACCACTAACTACACCCCAGCCAGCATTTCTTTTTTCTTTTTTTTTTCTTCTTCTTCTTT
TTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAGGCGCTCTACCACTGAGCTAAATCTCCAACCCCCAAAAGCATTTCTTTACTGTATATTTCTCCTTCTAA
AATGAAAGGTAGTATGGTCCGAA

hide sequence

RefSeq Acc Id:

XM_039081103 ⟹ XP_038937031

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,677,451 - 14,692,526 (-)	NCBI
mRatBN7.2	1	12,858,220 - 12,872,751 (-)	NCBI

RefSeq Acc Id:

XM_039081106 ⟹ XP_038937034

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,677,451 - 14,692,729 (-)	NCBI
mRatBN7.2	1	12,858,220 - 12,872,944 (-)	NCBI

RefSeq Acc Id:

XM_063265998 ⟹ XP_063122068

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,677,451 - 14,692,527 (-)	NCBI

RefSeq Acc Id:

XM_063266001 ⟹ XP_063122071

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,682,273 - 14,692,729 (-)	NCBI

RefSeq Acc Id:

XM_063266007 ⟹ XP_063122077

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,677,451 - 14,692,527 (-)	NCBI

RefSeq Acc Id:

XM_063266008 ⟹ XP_063122078

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	14,677,451 - 14,692,729 (-)	NCBI


Protein RefSeqs	NP_001032878	(Get FASTA)	NCBI Sequence Viewer
	XP_006227722	(Get FASTA)	NCBI Sequence Viewer
	XP_038937031	(Get FASTA)	NCBI Sequence Viewer
	XP_038937034	(Get FASTA)	NCBI Sequence Viewer
	XP_063122068	(Get FASTA)	NCBI Sequence Viewer
	XP_063122071	(Get FASTA)	NCBI Sequence Viewer
	XP_063122077	(Get FASTA)	NCBI Sequence Viewer
	XP_063122078	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00269	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000069590
	ENSRNOP00000069590.2
	ENSRNOP00000080779
	ENSRNOP00000080779.1
	ENSRNOP00000083034.1
	ENSRNOP00000097209.1

RefSeq Acc Id:	NP_001032878 ⟸ NM_001037789
- UniProtKB:	Q498D0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEERKAKRKSPKSFSAHSTQVVNAKKNTIPASKSTGFSNPASQSTSQRPKLKRVTKEKNKPPGGEGKGAQATPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLAR LNLELYGELEELPEDKRKAVSDANLDRLLSDLEELNSSIQKLHLADAQDVPSAPSS hide sequence

RefSeq Acc Id:	XP_006227722 ⟸ XM_006227660
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZQU5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEERKAKRKSPKSFSAHSTQVVNAKKNTIPASKSTGFSNPASQSTSQRPKLKRVTKEKNKPPGG EGKGAQATPIQHSFLTDVSDVQEMERGLLSLLNDFHSGKLQAFGNECSIEQMEHVRGMQEKLARLNLELYGELEELPEDKRKAVSDANLDRLLSDGAEKLTQRLKVLAALVEDPDSVPSTHMAALDPL hide sequence

Ensembl Acc Id:

ENSRNOP00000069590 ⟸ ENSRNOT00000085519

RefSeq Acc Id:	XP_038937034 ⟸ XM_039081106
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVR7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937031 ⟸ XM_039081103
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVR7 (UniProtKB/TrEMBL)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q498D0-F1-model_v2	AlphaFold	Q498D0	1-184	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13689505

Promoter ID:

EPDNEW_R30

Type:

initiation region

Name:

Ccdc28a_1

Description:

coiled-coil domain containing 28A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	13,395,410 - 13,395,470	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-62277	BioCyc
Ensembl Genes	ENSRNOG00000053347	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085519	ENTREZGENE
	ENSRNOT00000085519.2	UniProtKB/TrEMBL
	ENSRNOT00000096473.1	UniProtKB/TrEMBL
	ENSRNOT00000106151	ENTREZGENE
	ENSRNOT00000106151.1	UniProtKB/TrEMBL
	ENSRNOT00000112538.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7385321	IMAGE-MGC_LOAD
InterPro	DUF4061	UniProtKB/TrEMBL
KEGG Report	rno:361454	UniProtKB/TrEMBL
MGC_CLONE	MGC:116395	IMAGE-MGC_LOAD
NCBI Gene	361454	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 28A	UniProtKB/TrEMBL
	PTHR13400	UniProtKB/TrEMBL
Pfam	DUF4061	UniProtKB/TrEMBL
PhenoGen	Ccdc28a	PhenoGen
RatGTEx	ENSRNOG00000053347	RatGTEx
UniProt	A0A0G2JVR7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZQU5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZYH0_RAT	UniProtKB/TrEMBL
	A0A8I6AU21_RAT	UniProtKB/TrEMBL
	Q498D0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Ccdc28a	coiled-coil domain containing 28A	RGD1310326	similar to chromosome 6 open reading frame 80; chemokine C-C motif receptor-like 1 adjacent	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1310326	similar to chromosome 6 open reading frame 80; chemokine C-C motif receptor-like 1 adjacent	RGD1310326_predicted	similar to chromosome 6 open reading frame 80; chemokine C-C motif receptor-like 1 adjacent (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1310326_predicted	similar to chromosome 6 open reading frame 80; chemokine C-C motif receptor-like 1 adjacent (predicted)	LOC361454_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361454_predicted	similar to chromosome 6 open reading frame 80; chemokine C-C motif receptor-like 1 adjacent (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar