Ccdc28a (coiled-coil domain containing 28A) - Rat Genome Database

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Gene: Ccdc28a (coiled-coil domain containing 28A) Heterocephalus glaber
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Symbol: Ccdc28a
Name: coiled-coil domain containing 28A
RGD ID: 18921200
Description: ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); genetic disease (ortholog); myoepithelioma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 28A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,157,391 - 15,185,029 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,157,509 - 15,185,253 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
Ccdc28a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,157,391 - 15,185,029 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,157,509 - 15,185,253 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCDC28A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,773,769 - 138,793,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,773,769 - 138,793,319 (+)EnsemblGRCh38hg38GRCh38
GRCh376139,094,906 - 139,114,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,136,350 - 139,156,149 (+)NCBINCBI36Build 36hg18NCBI36
Build 346139,136,349 - 139,156,147NCBI
Celera6139,834,761 - 139,854,557 (+)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,656,063 - 136,675,758 (+)NCBIHuRef
CHM1_16139,357,677 - 139,377,457 (+)NCBICHM1_1
T2T-CHM13v2.06139,962,307 - 139,981,863 (+)NCBIT2T-CHM13v2.0
Ccdc28a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,089,424 - 18,110,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,089,424 - 18,110,746 (-)EnsemblGRCm39 Ensembl
GRCm381018,213,676 - 18,235,805 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,213,676 - 18,234,998 (-)EnsemblGRCm38mm10GRCm38
MGSCv371017,933,491 - 17,954,787 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,906,343 - 17,924,394 (-)NCBIMGSCv36mm8
MGSCv361018,092,971 - 18,111,028 (-)NCBIMGSCv36mm8
Celera1018,112,973 - 18,144,756 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.53NCBI
Ccdc28a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,677,451 - 14,692,729 (-)NCBIGRCr8
mRatBN7.2112,857,668 - 12,872,944 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,857,666 - 12,873,003 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,629,455 - 12,644,028 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,631,379 - 18,645,952 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,837,959 - 12,852,996 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0113,384,153 - 13,395,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,384,156 - 13,395,370 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,072,108 - 15,083,495 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,269,164 - 13,284,200 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,269,225 - 13,284,298 (-)NCBI
Celera111,314,407 - 11,329,332 (-)NCBICelera
Cytogenetic Map1p12NCBI
Ccdc28a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,846,227 - 20,873,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,849,493 - 20,875,284 (-)NCBIChiLan1.0ChiLan1.0
CCDC28A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,740,208 - 158,759,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,637,791 - 156,657,108 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,533,841 - 136,553,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,619,716 - 140,638,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,619,716 - 140,638,830 (+)Ensemblpanpan1.1panPan2
CCDC28A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,044,102 - 31,058,173 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,044,126 - 31,057,800 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,920,945 - 31,935,141 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,207,239 - 31,221,442 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,207,395 - 31,221,439 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,084,696 - 31,098,895 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,966,784 - 30,981,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,276,492 - 31,290,694 (+)NCBIUU_Cfam_GSD_1.0
CCDC28A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,647,000 - 25,663,273 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,646,997 - 25,663,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,782,282 - 28,798,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC28A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,596,584 - 34,615,633 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660406,769,559 - 6,788,468 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: ENSHGLT00000019336   ⟹   ENSHGLP00000019145
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,157,391 - 15,185,029 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000019337   ⟹   ENSHGLP00000019146
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462475315,165,358 - 15,183,398 (-)Ensembl
RefSeq Acc Id: XM_004846067   ⟹   XP_004846124
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,157,509 - 15,185,253 (-)NCBI
RefSeq Acc Id: XM_004846068   ⟹   XP_004846125
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,157,903 - 15,185,014 (-)NCBI
RefSeq Acc Id: XM_021259349   ⟹   XP_021115008
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,157,903 - 15,184,801 (-)NCBI
RefSeq Acc Id: XM_021259350   ⟹   XP_021115009
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475315,157,509 - 15,185,253 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004846124 (Get FASTA)   NCBI Sequence Viewer  
  XP_004846125 (Get FASTA)   NCBI Sequence Viewer  
  XP_021115008 (Get FASTA)   NCBI Sequence Viewer  
  XP_021115009 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000019145
RefSeq Acc Id: XP_021115009   ⟸   XM_021259350
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004846124   ⟸   XM_004846067
- Peptide Label: isoform X1
RefSeq Acc Id: XP_004846125   ⟸   XM_004846068
- Peptide Label: isoform X4
- UniProtKB: G5AUD2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021115008   ⟸   XM_021259349
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000019146   ⟸   ENSHGLT00000019337
RefSeq Acc Id: ENSHGLP00000019145   ⟸   ENSHGLT00000019336


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013735 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019336 ENTREZGENE
InterPro CCDC28 UniProtKB/TrEMBL
NCBI Gene Ccdc28a ENTREZGENE
PANTHER CHEMOKINE C-C MOTIF RECEPTOR 1 UniProtKB/TrEMBL
  COILED-COIL DOMAIN-CONTAINING PROTEIN 28A UniProtKB/TrEMBL
Pfam CCDC28 UniProtKB/TrEMBL
UniProt G5AUD2 ENTREZGENE, UniProtKB/TrEMBL