CCDC28A (coiled-coil domain containing 28A) - Rat Genome Database

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Gene: CCDC28A (coiled-coil domain containing 28A) Sus scrofa
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Symbol: CCDC28A
Name: coiled-coil domain containing 28A
RGD ID: 13909494
Description: ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); genetic disease (ortholog); myoepithelioma (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coiled-coil domain-containing protein 28A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,647,000 - 25,663,273 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,646,997 - 25,663,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,782,282 - 28,798,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
CCDC28A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,647,000 - 25,663,273 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,646,997 - 25,663,277 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,782,282 - 28,798,563 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC28A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,773,769 - 138,793,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,773,769 - 138,793,319 (+)EnsemblGRCh38hg38GRCh38
GRCh376139,094,906 - 139,114,456 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,136,350 - 139,156,149 (+)NCBINCBI36Build 36hg18NCBI36
Build 346139,136,349 - 139,156,147NCBI
Celera6139,834,761 - 139,854,557 (+)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,656,063 - 136,675,758 (+)NCBIHuRef
CHM1_16139,357,677 - 139,377,457 (+)NCBICHM1_1
T2T-CHM13v2.06139,962,307 - 139,981,863 (+)NCBIT2T-CHM13v2.0
Ccdc28a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391018,089,424 - 18,110,940 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1018,089,424 - 18,110,746 (-)EnsemblGRCm39 Ensembl
GRCm381018,213,676 - 18,235,805 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,213,676 - 18,234,998 (-)EnsemblGRCm38mm10GRCm38
MGSCv371017,933,491 - 17,954,787 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,906,343 - 17,924,394 (-)NCBIMGSCv36mm8
MGSCv361018,092,971 - 18,111,028 (-)NCBIMGSCv36mm8
Celera1018,112,973 - 18,144,756 (-)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.53NCBI
Ccdc28a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,677,451 - 14,692,729 (-)NCBIGRCr8
mRatBN7.2112,857,668 - 12,872,944 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,857,666 - 12,873,003 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,629,455 - 12,644,028 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,631,379 - 18,645,952 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,837,959 - 12,852,996 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0113,384,153 - 13,395,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,384,156 - 13,395,370 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0115,072,108 - 15,083,495 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,269,164 - 13,284,200 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,269,225 - 13,284,298 (-)NCBI
Celera111,314,407 - 11,329,332 (-)NCBICelera
Cytogenetic Map1p12NCBI
Ccdc28a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,846,227 - 20,873,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,849,493 - 20,875,284 (-)NCBIChiLan1.0ChiLan1.0
CCDC28A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,740,208 - 158,759,522 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,637,791 - 156,657,108 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,533,841 - 136,553,303 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,619,716 - 140,638,830 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,619,716 - 140,638,830 (+)Ensemblpanpan1.1panPan2
CCDC28A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,044,102 - 31,058,173 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,044,126 - 31,057,800 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,920,945 - 31,935,141 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,207,239 - 31,221,442 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,207,395 - 31,221,439 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,084,696 - 31,098,895 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0130,966,784 - 30,981,007 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,276,492 - 31,290,694 (+)NCBIUU_Cfam_GSD_1.0
CCDC28A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,596,584 - 34,615,633 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660406,769,559 - 6,788,468 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc28a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475315,157,391 - 15,185,029 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475315,157,509 - 15,185,253 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CCDC28A
702 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1 2 1
Low 10 4 2 5 2 21 2 2 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000004584   ⟹   ENSSSCP00000004481
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,647,000 - 25,663,275 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087117   ⟹   ENSSSCP00000069164
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl125,647,000 - 25,663,273 (-)Ensembl
RefSeq Acc Id: NM_001244669   ⟹   NP_001231598
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1125,646,997 - 25,663,277 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001231598   ⟸   NM_001244669
- UniProtKB: A0A4X1VL97 (UniProtKB/TrEMBL),   A0A8D0JQA1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000004481   ⟸   ENSSSCT00000004584
RefSeq Acc Id: ENSSSCP00000069164   ⟸   ENSSSCT00000087117


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000004148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005027536 UniProtKB/TrEMBL
  ENSSSCG00015020579 UniProtKB/TrEMBL
  ENSSSCG00025068785 UniProtKB/TrEMBL
  ENSSSCG00030005688 UniProtKB/TrEMBL
  ENSSSCG00035059018 UniProtKB/TrEMBL
  ENSSSCG00040075297 UniProtKB/TrEMBL
  ENSSSCG00045005181 UniProtKB/TrEMBL
  ENSSSCG00050070926 UniProtKB/TrEMBL
  ENSSSCG00055027682 UniProtKB/TrEMBL
  ENSSSCG00060028453 UniProtKB/TrEMBL
  ENSSSCG00065013174 UniProtKB/TrEMBL
  ENSSSCG00070025311 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000087117 ENTREZGENE
  ENSSSCT00000087117.1 UniProtKB/TrEMBL
  ENSSSCT00005043645.1 UniProtKB/TrEMBL
  ENSSSCT00015027192.1 UniProtKB/TrEMBL
  ENSSSCT00015027276.1 UniProtKB/TrEMBL
  ENSSSCT00015027350.1 UniProtKB/TrEMBL
  ENSSSCT00025094503.1 UniProtKB/TrEMBL
  ENSSSCT00025094612.1 UniProtKB/TrEMBL
  ENSSSCT00030007730.1 UniProtKB/TrEMBL
  ENSSSCT00030007738.1 UniProtKB/TrEMBL
  ENSSSCT00035079037.1 UniProtKB/TrEMBL
  ENSSSCT00035079042.1 UniProtKB/TrEMBL
  ENSSSCT00040104399.1 UniProtKB/TrEMBL
  ENSSSCT00045008606.1 UniProtKB/TrEMBL
  ENSSSCT00045008612.1 UniProtKB/TrEMBL
  ENSSSCT00045008620.1 UniProtKB/TrEMBL
  ENSSSCT00050096726.1 UniProtKB/TrEMBL
  ENSSSCT00050096729.1 UniProtKB/TrEMBL
  ENSSSCT00050096731.1 UniProtKB/TrEMBL
  ENSSSCT00055054741.1 UniProtKB/TrEMBL
  ENSSSCT00055054778.1 UniProtKB/TrEMBL
  ENSSSCT00060038479.1 UniProtKB/TrEMBL
  ENSSSCT00060038483.1 UniProtKB/TrEMBL
  ENSSSCT00060038486.1 UniProtKB/TrEMBL
  ENSSSCT00065017533.1 UniProtKB/TrEMBL
  ENSSSCT00065017539.1 UniProtKB/TrEMBL
  ENSSSCT00070050596.1 UniProtKB/TrEMBL
InterPro CCDC28 UniProtKB/TrEMBL
NCBI Gene CCDC28A ENTREZGENE
PANTHER COILED-COIL DOMAIN-CONTAINING PROTEIN 28A UniProtKB/TrEMBL
  PTHR13400 UniProtKB/TrEMBL
Pfam DUF4061 UniProtKB/TrEMBL
UniProt A0A4X1VL97 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QW39_PIG UniProtKB/TrEMBL
  A0A8D0JQA1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0MYL8_PIG UniProtKB/TrEMBL
  A0A8D0T7D7_PIG UniProtKB/TrEMBL
  A0A8D1GMR8_PIG UniProtKB/TrEMBL
  A0A8D1NR00_PIG UniProtKB/TrEMBL
  A0A8D1UY85_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86289 ENTREZGENE