Gene: Vta1 (vesicle trafficking 1) Rattus norvegicus
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Symbol: Vta1
Name: vesicle trafficking 1
Description: ENCODES a protein that exhibits protein C-terminus binding (ortholog); INVOLVED IN multivesicular body sorting pathway (ortholog); viral budding (ortholog); PARTICIPATES IN endocytosis pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular membrane-bounded organelle (ortholog); INTERACTS WITH bisphenol A; cadmium dichloride; flutamide
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Lip5; LOC292640; lysosomal trafficking regulator interacting protein-5; MGC112826; RGD1305031; similar to RIKEN cDNA 1110059P08; vacuolar protein sorting-associated protein VTA1 homolog; vesicle (multivesicular body) trafficking 1; Vps20-associated 1 homolog; Vps20-associated 1 homolog (S. cerevisiae)
Orthologs:
Homo sapiens (human) : VTA1 (vesicle trafficking 1)  HGNC  Alliance
Mus musculus (house mouse) : Vta1 (vesicle (multivesicular body) trafficking 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vta1 (vesicle trafficking 1)
Pan paniscus (bonobo/pygmy chimpanzee) : VTA1 (vesicle trafficking 1)
Canis lupus familiaris (dog) : VTA1 (vesicle trafficking 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vta1 (vesicle trafficking 1)
Sus scrofa (pig) : VTA1 (vesicle trafficking 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.018,830,405 - 8,878,191 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0110,447,206 - 10,495,550 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.419,512,291 - 9,560,020 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.119,512,290 - 9,560,020 (-)NCBI
Celera17,509,495 - 7,557,229 (-)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Vta1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305031
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-01-30
Status: ACTIVE