Fastkd3 (FAST kinase domains 3) - Rat Genome Database

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Gene: Fastkd3 (FAST kinase domains 3) Rattus norvegicus
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Symbol: Fastkd3
Name: FAST kinase domains 3
RGD ID: 1309729
Description: Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing; mitochondrial cytochrome c oxidase assembly; and post-transcriptional regulation of gene expression. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Orthologous to human FASTKD3 (FAST kinase domains 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: FAST kinase domain-containing protein 3; FAST kinase domain-containing protein 3, mitochondrial; LOC290946; RGD1309729; similar to hypothetical protein MGC5297
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8136,686,727 - 36,695,376 (-)NCBIGRCr8
mRatBN7.2134,858,342 - 34,866,988 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl134,858,219 - 34,866,973 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx134,719,673 - 34,728,205 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0140,710,527 - 40,719,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0134,885,231 - 34,893,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0137,734,400 - 37,742,932 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl137,734,403 - 37,742,932 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0139,116,024 - 39,124,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4175,077,472 - 5,086,004 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1175,077,471 - 5,086,062 (-)NCBI
Celera133,427,815 - 33,436,347 (-)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration. Simarro M, etal., Biochem Biophys Res Commun. 2010 Oct 22;401(3):440-6. doi: 10.1016/j.bbrc.2010.09.075. Epub 2010 Sep 24.
Additional References at PubMed
PMID:12477932   PMID:22658674   PMID:27789713  


Genomics

Comparative Map Data
Fastkd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8136,686,727 - 36,695,376 (-)NCBIGRCr8
mRatBN7.2134,858,342 - 34,866,988 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl134,858,219 - 34,866,973 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx134,719,673 - 34,728,205 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0140,710,527 - 40,719,059 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0134,885,231 - 34,893,763 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0137,734,400 - 37,742,932 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl137,734,403 - 37,742,932 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0139,116,024 - 39,124,660 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4175,077,472 - 5,086,004 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1175,077,471 - 5,086,062 (-)NCBI
Celera133,427,815 - 33,436,347 (-)NCBICelera
Cytogenetic Map1p11NCBI
FASTKD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3857,859,159 - 7,869,031 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl57,859,159 - 7,869,037 (-)EnsemblGRCh38hg38GRCh38
GRCh3757,859,272 - 7,869,144 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3657,912,272 - 7,922,115 (-)NCBINCBI36Build 36hg18NCBI36
Celera57,900,317 - 7,910,192 (-)NCBICelera
Cytogenetic Map5p15.31NCBI
HuRef57,841,012 - 7,850,887 (-)NCBIHuRef
CHM1_157,859,362 - 7,869,235 (-)NCBICHM1_1
T2T-CHM13v2.057,798,283 - 7,808,155 (-)NCBIT2T-CHM13v2.0
Fastkd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391368,730,281 - 68,740,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1368,730,353 - 68,740,457 (+)EnsemblGRCm39 Ensembl
GRCm381368,582,167 - 68,592,338 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1368,582,234 - 68,592,338 (+)EnsemblGRCm38mm10GRCm38
MGSCv371368,721,125 - 68,731,156 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361369,049,634 - 69,059,708 (+)NCBIMGSCv36mm8
Celera1370,942,018 - 70,952,068 (+)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1335.55NCBI
Fastkd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555045,400,544 - 5,411,401 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555045,401,956 - 5,412,216 (-)NCBIChiLan1.0ChiLan1.0
FASTKD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v248,114,702 - 8,124,579 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan156,268,305 - 6,278,188 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v058,185,897 - 8,195,780 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.158,007,434 - 8,017,315 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl58,003,812 - 8,017,309 (-)Ensemblpanpan1.1panPan2
FASTKD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1346,100,410 - 6,109,878 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl346,099,846 - 6,228,301 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3410,608,384 - 10,617,856 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0346,005,803 - 6,015,284 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl346,005,838 - 6,134,385 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1346,055,574 - 6,065,042 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0346,036,349 - 6,045,816 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0346,249,220 - 6,258,702 (+)NCBIUU_Cfam_GSD_1.0
Fastkd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213239,023,104 - 239,033,644 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936643369,121 - 379,954 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936643369,145 - 379,691 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FASTKD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1674,270,935 - 74,279,524 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11674,270,918 - 74,279,528 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21680,323,528 - 80,332,154 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FASTKD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.147,451,618 - 7,461,465 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl47,454,101 - 7,461,256 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606421,155,804 - 21,168,951 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fastkd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247515,435,854 - 5,445,200 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247515,435,924 - 5,445,203 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fastkd3
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:149
Interacting mature miRNAs:164
Transcripts:ENSRNOT00000034410
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat

Markers in Region
RH132225  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2134,858,380 - 34,858,586 (+)MAPPERmRatBN7.2
Rnor_6.0137,734,439 - 37,734,644NCBIRnor6.0
Rnor_5.0139,116,063 - 39,116,268UniSTSRnor5.0
RGSC_v3.4175,077,511 - 5,077,716UniSTSRGSC3.4
Celera133,427,854 - 33,428,059UniSTS
Cytogenetic Map17p14UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 28 32 25 17 25 72 33 36 11
Low 15 25 16 2 16 8 11 2 2 5 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000034410   ⟹   ENSRNOP00000029498
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl134,858,342 - 34,866,973 (-)Ensembl
Rnor_6.0 Ensembl137,734,403 - 37,742,932 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079186   ⟹   ENSRNOP00000073324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl134,858,345 - 34,865,651 (-)Ensembl
Rnor_6.0 Ensembl137,734,410 - 37,741,709 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102675   ⟹   ENSRNOP00000076570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl134,858,219 - 34,865,766 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000111244   ⟹   ENSRNOP00000083487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl134,863,703 - 34,866,973 (-)Ensembl
RefSeq Acc Id: NM_001082574   ⟹   NP_001076043
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8136,686,727 - 36,695,259 (-)NCBI
mRatBN7.2134,858,342 - 34,866,874 (-)NCBI
Rnor_6.0137,734,400 - 37,742,932 (-)NCBI
Rnor_5.0139,116,024 - 39,124,660 (-)NCBI
RGSC_v3.4175,077,472 - 5,086,004 (-)RGD
Celera133,427,815 - 33,436,347 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006227809   ⟹   XP_006227871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8136,686,727 - 36,694,582 (-)NCBI
mRatBN7.2134,858,342 - 34,866,611 (-)NCBI
Rnor_6.0137,734,400 - 37,742,907 (-)NCBI
Rnor_5.0139,116,024 - 39,124,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006227811   ⟹   XP_006227873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8136,686,727 - 36,695,141 (-)NCBI
mRatBN7.2134,858,342 - 34,866,849 (-)NCBI
Rnor_6.0137,734,400 - 37,742,907 (-)NCBI
Rnor_5.0139,116,024 - 39,124,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039102861   ⟹   XP_038958789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8136,686,727 - 36,693,898 (-)NCBI
mRatBN7.2134,858,342 - 34,866,869 (-)NCBI
RefSeq Acc Id: XM_063282704   ⟹   XP_063138774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8136,689,774 - 36,695,376 (-)NCBI
RefSeq Acc Id: XR_010063812
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8136,688,513 - 36,695,376 (-)NCBI
RefSeq Acc Id: NP_001076043   ⟸   NM_001082574
- Peptide Label: precursor
- UniProtKB: Q68FN9 (UniProtKB/Swiss-Prot),   A6JV27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227873   ⟸   XM_006227811
- Peptide Label: isoform X1
- UniProtKB: Q68FN9 (UniProtKB/Swiss-Prot),   A6JV27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227871   ⟸   XM_006227809
- Peptide Label: isoform X1
- UniProtKB: Q68FN9 (UniProtKB/Swiss-Prot),   A6JV27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073324   ⟸   ENSRNOT00000079186
RefSeq Acc Id: ENSRNOP00000029498   ⟸   ENSRNOT00000034410
RefSeq Acc Id: XP_038958789   ⟸   XM_039102861
- Peptide Label: isoform X3
- UniProtKB: A6JV28 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076570   ⟸   ENSRNOT00000102675
RefSeq Acc Id: ENSRNOP00000083487   ⟸   ENSRNOT00000111244
RefSeq Acc Id: XP_063138774   ⟸   XM_063282704
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZW50 (UniProtKB/TrEMBL)
Protein Domains
FAST kinase leucine-rich   RAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FN9-F1-model_v2 AlphaFold Q68FN9 1-656 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689577
Promoter ID:EPDNEW_R102
Type:initiation region
Name:Fastkd3_1
Description:FAST kinase domains 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0137,743,031 - 37,743,091EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309729 AgrOrtholog
BioCyc Gene G2FUF-61852 BioCyc
Ensembl Genes ENSRNOG00000027422 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034410 ENTREZGENE
  ENSRNOT00000034410.7 UniProtKB/Swiss-Prot
  ENSRNOT00000079186.2 UniProtKB/TrEMBL
  ENSRNOT00000102675.1 UniProtKB/TrEMBL
  ENSRNOT00000111244.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7111194 IMAGE-MGC_LOAD
  IMAGE:7122978 IMAGE-MGC_LOAD
InterPro FAST_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAST_Leu-rich UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:290946 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:187220 IMAGE-MGC_LOAD
  MGC:95037 IMAGE-MGC_LOAD
NCBI Gene 290946 ENTREZGENE
PANTHER FAST KINASE DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAST LEU-RICH DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FAST_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAST_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fastkd3 PhenoGen
PROSITE RAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027422 RatGTEx
SMART RAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y6U4_RAT UniProtKB/TrEMBL
  A0A8I5ZW50 ENTREZGENE, UniProtKB/TrEMBL
  A6JV27 ENTREZGENE, UniProtKB/TrEMBL
  A6JV28 ENTREZGENE, UniProtKB/TrEMBL
  B1WBM1_RAT UniProtKB/TrEMBL
  FAKD3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Fastkd3  FAST kinase domains 3  RGD1309729  similar to hypothetical protein MGC5297  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309729  similar to hypothetical protein MGC5297  RGD1309729_predicted  similar to hypothetical protein MGC5297 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309729_predicted  similar to hypothetical protein MGC5297 (predicted)  LOC290946_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC290946_predicted  similar to hypothetical protein MGC5297 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL