Epb41l2 (erythrocyte membrane protein band 4.1-like 2) - Rat Genome Database

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Gene: Epb41l2 (erythrocyte membrane protein band 4.1-like 2) Rattus norvegicus
Analyze
Symbol: Epb41l2
Name: erythrocyte membrane protein band 4.1-like 2
RGD ID: 1563977
Description: Predicted to enable PH domain binding activity and spectrin binding activity. Predicted to be involved in actomyosin structure organization and positive regulation of protein localization to cell cortex. Predicted to be located in cell junction and nucleoplasm. Predicted to be active in cytoskeleton and plasma membrane. Orthologous to human EPB41L2 (erythrocyte membrane protein band 4.1 like 2); INTERACTS WITH 1-naphthyl isothiocyanate; 4,4'-diaminodiphenylmethane; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Also known as: band 4.1-like protein 2; Epb4.1l2; LOC309557; RGD1563977; similar to protein 4.1G
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0120,881,820 - 21,067,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0122,362,883 - 22,548,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4120,343,833 - 20,519,742 (-)NCBIRGSC3.4rn4RGSC3.4
Celera118,137,515 - 18,312,175 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell junction  (IEA,ISO)
COP9 signalosome  (IEA,ISO)
cytoskeleton  (IBA)
nucleoplasm  (IEA,ISO)
plasma membrane  (IBA,ISO)

Molecular Function

References

Additional References at PubMed
PMID:11274145   PMID:12974671   PMID:15372499   PMID:15632090   PMID:18796539   PMID:18850735   PMID:20458337   PMID:21423176   PMID:21898413   PMID:22871113   PMID:23376485   PMID:23870127  
PMID:31505169  


Genomics

Comparative Map Data
Epb41l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0120,881,820 - 21,067,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0122,362,883 - 22,548,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4120,343,833 - 20,519,742 (-)NCBIRGSC3.4rn4RGSC3.4
Celera118,137,515 - 18,312,175 (+)NCBICelera
Cytogenetic Map1p12NCBI
EPB41L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6130,839,347 - 131,063,322 (-)EnsemblGRCh38hg38GRCh38
GRCh386130,827,955 - 131,063,251 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh376131,160,487 - 131,384,385 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366131,202,180 - 131,319,333 (-)NCBINCBI36hg18NCBI36
Build 346131,202,182 - 131,426,015NCBI
Celera6131,906,821 - 132,131,081 (-)NCBI
Cytogenetic Map6q23.1-q23.2NCBI
HuRef6128,741,776 - 128,965,809 (-)NCBIHuRef
CHM1_16131,423,545 - 131,647,537 (-)NCBICHM1_1
Epb41l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391025,235,680 - 25,399,417 (+)NCBIGRCm39mm39
GRCm39 Ensembl1025,235,696 - 25,399,417 (+)Ensembl
GRCm381025,359,782 - 25,523,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1025,359,798 - 25,523,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv371025,128,178 - 25,243,320 (+)NCBIGRCm37mm9NCBIm37
MGSCv361025,131,003 - 25,202,496 (+)NCBImm8
Celera1026,350,009 - 26,458,273 (+)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1012.26NCBI
Epb41l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543611,650,584 - 11,805,822 (-)NCBIChiLan1.0ChiLan1.0
EPB41L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16132,747,326 - 132,971,134 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6132,747,326 - 132,878,021 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06128,640,840 - 128,865,043 (-)NCBIMhudiblu_PPA_v0panPan3
EPB41L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,120,583 - 69,274,433 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,121,139 - 69,286,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha169,870,056 - 70,062,791 (-)NCBI
ROS_Cfam_1.0169,349,005 - 69,541,255 (-)NCBI
UMICH_Zoey_3.1169,266,575 - 69,459,216 (-)NCBI
UNSW_CanFamBas_1.0169,039,319 - 69,231,857 (-)NCBI
UU_Cfam_GSD_1.0169,698,102 - 69,891,156 (-)NCBI
Epb41l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946119,371,237 - 119,560,612 (-)NCBI
SpeTri2.0NW_004936790401,940 - 590,111 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,418,217 - 32,630,643 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,418,210 - 32,630,643 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2135,916,762 - 36,027,418 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11342,490,435 - 42,721,896 (+)NCBI
ChlSab1.1 Ensembl1342,576,726 - 42,678,386 (+)Ensembl
Vero_WHO_p1.0NW_02366604014,631,022 - 14,858,307 (+)NCBI
Epb41l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247535,023,970 - 5,240,063 (-)NCBI

Position Markers
RH142843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2119,943,995 - 19,944,103 (+)MAPPER
Rnor_6.0120,962,634 - 20,962,741NCBIRnor6.0
Rnor_5.0122,443,683 - 22,443,790UniSTSRnor5.0
RGSC_v3.4120,424,399 - 20,424,506UniSTSRGSC3.4
Celera118,231,188 - 18,231,295UniSTS
RH 3.4 Map1191.9UniSTS
Cytogenetic Map1p12UniSTS
RH129243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2119,863,080 - 19,863,272 (+)MAPPER
Rnor_6.0120,881,891 - 20,882,082NCBIRnor6.0
Rnor_5.0122,362,954 - 22,363,145UniSTSRnor5.0
RGSC_v3.4120,343,340 - 20,343,531UniSTSRGSC3.4
Celera118,311,913 - 18,312,104UniSTS
RH 3.4 Map1188.0UniSTS
Cytogenetic Map1p12UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124368159Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128468970Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1134993530Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1134993530Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1134993530Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1164407321Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)125439343579402Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)125439343579402Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)125439343579402Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)125439386904217Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1186804543724576Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1457869349578693Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15655769122614963Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1565577285706974Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11131448975844121Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11131448983657083Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11131448983657083Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11131448983657083Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11131448983657083Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11131448983657083Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11131465834993348Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11249343957493439Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11362925158629251Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11614314349547474Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11614314349547474Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12034156058000154Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1215
Count of miRNA genes:217
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000017322, ENSRNOT00000017412, ENSRNOT00000017417, ENSRNOT00000061332
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 37 21 19 21 6 8 74 31 41 11 6
Low 2 20 20 20 2 3 4 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017587772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017322   ⟹   ENSRNOP00000017322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000017412   ⟹   ENSRNOP00000017412
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000017417   ⟹   ENSRNOP00000017417
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000061332   ⟹   ENSRNOP00000058049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079688   ⟹   ENSRNOP00000071713
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: XM_017589841   ⟹   XP_017445330
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,957,441 (-)NCBI
Rnor_6.0120,881,820 - 20,972,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589842   ⟹   XP_017445331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
Rnor_6.0120,881,820 - 21,067,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589846   ⟹   XP_017445335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,958,664 (-)NCBI
Rnor_6.0120,881,820 - 20,976,952 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589847   ⟹   XP_017445336
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,984,467 (-)NCBI
Rnor_6.0120,881,820 - 21,004,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589862   ⟹   XP_017445351
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,759 (-)NCBI
Rnor_6.0120,881,820 - 21,067,667 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099050   ⟹   XP_038954978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,984,468 (-)NCBI
RefSeq Acc Id: XM_039099051   ⟹   XP_038954979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,760 (-)NCBI
RefSeq Acc Id: XM_039099058   ⟹   XP_038954986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,753 (-)NCBI
RefSeq Acc Id: XM_039099065   ⟹   XP_038954993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099066   ⟹   XP_038954994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099071   ⟹   XP_038954999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099075   ⟹   XP_038955003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099076   ⟹   XP_038955004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099083   ⟹   XP_038955011
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099088   ⟹   XP_038955016
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099094   ⟹   XP_038955022
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099098   ⟹   XP_038955026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099103   ⟹   XP_038955031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099113   ⟹   XP_038955041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099117   ⟹   XP_038955045
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099119   ⟹   XP_038955047
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099123   ⟹   XP_038955051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099126   ⟹   XP_038955054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099128   ⟹   XP_038955056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099131   ⟹   XP_038955059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,893,299 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099134   ⟹   XP_038955062
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099141   ⟹   XP_038955069
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099143   ⟹   XP_038955071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099144   ⟹   XP_038955072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
Protein Sequences
Protein RefSeqs XP_017445330 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445331 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445335 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445336 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954999 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955003 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955004 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955011 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955016 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955022 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955031 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955041 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955054 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955056 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955062 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955071 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955072 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL82921 (Get FASTA)   NCBI Sequence Viewer  
  EDL82922 (Get FASTA)   NCBI Sequence Viewer  
  EDL82923 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_017445331   ⟸   XM_017589842
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445351   ⟸   XM_017589862
- Peptide Label: isoform X19
- UniProtKB: D3ZAY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445336   ⟸   XM_017589847
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445335   ⟸   XM_017589846
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445330   ⟸   XM_017589841
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000071713   ⟸   ENSRNOT00000079688
RefSeq Acc Id: ENSRNOP00000058049   ⟸   ENSRNOT00000061332
RefSeq Acc Id: ENSRNOP00000017412   ⟸   ENSRNOT00000017412
RefSeq Acc Id: ENSRNOP00000017417   ⟸   ENSRNOT00000017417
RefSeq Acc Id: ENSRNOP00000017322   ⟸   ENSRNOT00000017322
RefSeq Acc Id: XP_038955072   ⟸   XM_039099144
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038955071   ⟸   XM_039099143
- Peptide Label: isoform X21
RefSeq Acc Id: XP_038955069   ⟸   XM_039099141
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038955062   ⟸   XM_039099134
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038955056   ⟸   XM_039099128
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038955054   ⟸   XM_039099126
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038955051   ⟸   XM_039099123
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038955047   ⟸   XM_039099119
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038955016   ⟸   XM_039099088
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954993   ⟸   XM_039099065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955041   ⟸   XM_039099113
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038955031   ⟸   XM_039099103
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038954994   ⟸   XM_039099066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955022   ⟸   XM_039099094
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038955011   ⟸   XM_039099083
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038955045   ⟸   XM_039099117
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038955026   ⟸   XM_039099098
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038955003   ⟸   XM_039099075
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954999   ⟸   XM_039099071
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038955004   ⟸   XM_039099076
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954979   ⟸   XM_039099051
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954986   ⟸   XM_039099058
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954978   ⟸   XM_039099050
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955059   ⟸   XM_039099131
- Peptide Label: isoform X18
Protein Domains
FERM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563977 AgrOrtholog
Ensembl Genes ENSRNOG00000012346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017322 UniProtKB/TrEMBL
  ENSRNOP00000017412 UniProtKB/TrEMBL
  ENSRNOP00000017417 UniProtKB/TrEMBL
  ENSRNOP00000058049 UniProtKB/TrEMBL
  ENSRNOP00000071713 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017322 UniProtKB/TrEMBL
  ENSRNOT00000017412 UniProtKB/TrEMBL
  ENSRNOT00000017417 UniProtKB/TrEMBL
  ENSRNOT00000061332 UniProtKB/TrEMBL
  ENSRNOT00000079688 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band_4.1_C UniProtKB/TrEMBL
  Band_41_domain UniProtKB/TrEMBL
  E41L2 UniProtKB/TrEMBL
  Ez/rad/moesin UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
NCBI Gene 309557 ENTREZGENE
PANTHER PTHR23280:SF17 UniProtKB/TrEMBL
Pfam 4_1_CTD UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
PhenoGen Epb41l2 PhenoGen
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP FERM_3-hlx UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2K162_RAT UniProtKB/TrEMBL
  D3ZAY2_RAT UniProtKB/TrEMBL
  D3ZAY7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDT1_RAT UniProtKB/TrEMBL
  D3ZM69_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-14 Epb41l2  erythrocyte membrane protein band 4.1-like 2  Epb4.1l2  erythrocyte membrane protein band 4.1-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Epb4.1l2  erythrocyte membrane protein band 4.1-like 2  RGD1563977_predicted  similar to protein 4.1G (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563977_predicted  similar to protein 4.1G (predicted)  LOC309557  similar to protein 4.1G  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC309557  similar to protein 4.1G      Symbol and Name status set to provisional 70820 PROVISIONAL