Epb41l2 (erythrocyte membrane protein band 4.1-like 2) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Epb41l2 (erythrocyte membrane protein band 4.1-like 2) Rattus norvegicus
Analyze
Symbol: Epb41l2
Name: erythrocyte membrane protein band 4.1-like 2
RGD ID: 1563977
Description: Predicted to enable PH domain binding activity and spectrin binding activity. Predicted to be involved in actomyosin structure organization and positive regulation of protein localization to cell cortex. Predicted to be located in cell cortex; cell junction; and nucleoplasm. Predicted to be active in cytoskeleton and plasma membrane. Orthologous to human EPB41L2 (erythrocyte membrane protein band 4.1 like 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: band 4.1-like protein 2; Epb4.1l2; LOC309557; RGD1563977; similar to protein 4.1G
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2119,863,010 - 20,037,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl119,863,009 - 20,037,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx119,639,735 - 19,814,553 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0125,632,792 - 25,807,979 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0119,839,607 - 20,014,375 (-)NCBIRnor_WKY
Rnor_6.0120,881,820 - 21,067,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0122,362,883 - 22,548,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4120,343,833 - 20,519,742 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera118,137,515 - 18,312,175 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
cisplatin  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
genistein  (ISO)
glyphosate  (ISO)
ivermectin  (ISO)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
mitoxantrone  (ISO)
N-nitrosodimethylamine  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
pirinixic acid  (ISO)
piroxicam  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
succimer  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11274145   PMID:12974671   PMID:15372499   PMID:15632090   PMID:18796539   PMID:18850735   PMID:20458337   PMID:21423176   PMID:21898413   PMID:22871113   PMID:23376485   PMID:23870127  
PMID:31505169  


Genomics

Comparative Map Data
Epb41l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2119,863,010 - 20,037,795 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl119,863,009 - 20,037,721 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx119,639,735 - 19,814,553 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0125,632,792 - 25,807,979 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0119,839,607 - 20,014,375 (-)NCBIRnor_WKY
Rnor_6.0120,881,820 - 21,067,713 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0122,362,883 - 22,548,596 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4120,343,833 - 20,519,742 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera118,137,515 - 18,312,175 (+)NCBICelera
Cytogenetic Map1p12NCBI
EPB41L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386130,839,347 - 131,063,245 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6130,839,347 - 131,063,322 (-)EnsemblGRCh38hg38GRCh38
GRCh376131,160,487 - 131,384,385 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366131,202,180 - 131,319,333 (-)NCBINCBI36Build 36hg18NCBI36
Build 346131,202,182 - 131,426,015NCBI
Celera6131,906,821 - 132,131,081 (-)NCBICelera
Cytogenetic Map6q23.1-q23.2NCBI
HuRef6128,741,776 - 128,965,809 (-)NCBIHuRef
CHM1_16131,423,545 - 131,647,537 (-)NCBICHM1_1
T2T-CHM13v2.06132,034,412 - 132,258,670 (-)NCBIT2T-CHM13v2.0
Epb41l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391025,235,680 - 25,399,417 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1025,235,696 - 25,399,417 (+)EnsemblGRCm39 Ensembl
GRCm381025,359,782 - 25,523,519 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1025,359,798 - 25,523,519 (+)EnsemblGRCm38mm10GRCm38
MGSCv371025,128,178 - 25,243,320 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361025,131,003 - 25,202,496 (+)NCBIMGSCv36mm8
Celera1026,350,009 - 26,458,273 (+)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1012.26NCBI
Epb41l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543611,650,584 - 11,805,822 (-)NCBIChiLan1.0ChiLan1.0
EPB41L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16132,747,326 - 132,971,134 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6132,747,326 - 132,878,021 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06128,640,840 - 128,865,043 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
EPB41L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,120,583 - 69,274,433 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl169,121,139 - 69,286,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha169,870,056 - 70,062,791 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,349,005 - 69,541,255 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,358,773 - 69,451,130 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1169,266,575 - 69,459,216 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,039,319 - 69,231,857 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,698,102 - 69,891,156 (-)NCBIUU_Cfam_GSD_1.0
Epb41l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946119,371,237 - 119,560,612 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936790401,940 - 590,111 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPB41L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,418,217 - 32,630,638 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1132,418,210 - 32,630,643 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2135,916,762 - 36,027,418 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EPB41L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11342,490,435 - 42,721,896 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1342,576,726 - 42,678,386 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604014,631,022 - 14,858,307 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epb41l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247535,023,970 - 5,146,595 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247535,023,970 - 5,240,063 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
RH142843  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2119,943,995 - 19,944,103 (+)MAPPERmRatBN7.2
Rnor_6.0120,962,634 - 20,962,741NCBIRnor6.0
Rnor_5.0122,443,683 - 22,443,790UniSTSRnor5.0
RGSC_v3.4120,424,399 - 20,424,506UniSTSRGSC3.4
Celera118,231,188 - 18,231,295UniSTS
RH 3.4 Map1191.9UniSTS
Cytogenetic Map1p12UniSTS
RH129243  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2119,863,080 - 19,863,272 (+)MAPPERmRatBN7.2
Rnor_6.0120,881,891 - 20,882,082NCBIRnor6.0
Rnor_5.0122,362,954 - 22,363,145UniSTSRnor5.0
RGSC_v3.4120,343,340 - 20,343,531UniSTSRGSC3.4
Celera118,311,913 - 18,312,104UniSTS
RH 3.4 Map1188.0UniSTS
Cytogenetic Map1p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1215
Count of miRNA genes:217
Interacting mature miRNAs:251
Transcripts:ENSRNOT00000017322, ENSRNOT00000017412, ENSRNOT00000017417, ENSRNOT00000061332
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 37 21 19 21 6 8 74 31 41 11 6
Low 2 20 20 20 2 3 4 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001400827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589840 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589841 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589842 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017589864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039099144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017322   ⟹   ENSRNOP00000017322
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl119,863,016 - 20,037,712 (-)Ensembl
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000017412   ⟹   ENSRNOP00000017412
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl119,863,009 - 20,037,721 (-)Ensembl
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000017417   ⟹   ENSRNOP00000017417
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl119,863,009 - 20,037,721 (-)Ensembl
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000061332   ⟹   ENSRNOP00000058049
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl119,863,016 - 20,037,712 (-)Ensembl
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079688   ⟹   ENSRNOP00000071713
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl119,863,016 - 20,037,712 (-)Ensembl
Rnor_6.0 Ensembl120,893,995 - 20,962,526 (-)Ensembl
RefSeq Acc Id: XM_017589841   ⟹   XP_017445330
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,957,441 (-)NCBI
Rnor_6.0120,881,820 - 20,972,613 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589842   ⟹   XP_017445331
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
Rnor_6.0120,881,820 - 21,067,713 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589846   ⟹   XP_017445335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,958,664 (-)NCBI
Rnor_6.0120,881,820 - 20,976,952 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589847   ⟹   XP_017445336
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,984,467 (-)NCBI
Rnor_6.0120,881,820 - 21,004,415 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017589862   ⟹   XP_017445351
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,759 (-)NCBI
Rnor_6.0120,881,820 - 21,067,667 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039099050   ⟹   XP_038954978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 19,984,468 (-)NCBI
RefSeq Acc Id: XM_039099051   ⟹   XP_038954979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,760 (-)NCBI
RefSeq Acc Id: XM_039099058   ⟹   XP_038954986
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,753 (-)NCBI
RefSeq Acc Id: XM_039099065   ⟹   XP_038954993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099066   ⟹   XP_038954994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099071   ⟹   XP_038954999
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099075   ⟹   XP_038955003
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099076   ⟹   XP_038955004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099083   ⟹   XP_038955011
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099088   ⟹   XP_038955016
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099094   ⟹   XP_038955022
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099098   ⟹   XP_038955026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099103   ⟹   XP_038955031
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099113   ⟹   XP_038955041
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099117   ⟹   XP_038955045
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099119   ⟹   XP_038955047
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099123   ⟹   XP_038955051
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099126   ⟹   XP_038955054
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099128   ⟹   XP_038955056
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099131   ⟹   XP_038955059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,893,299 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099134   ⟹   XP_038955062
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099141   ⟹   XP_038955069
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099143   ⟹   XP_038955071
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
RefSeq Acc Id: XM_039099144   ⟹   XP_038955072
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2119,863,010 - 20,037,795 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001387756 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445330 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445331 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445335 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445336 (Get FASTA)   NCBI Sequence Viewer  
  XP_017445351 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954978 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954979 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954986 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954993 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038954999 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955003 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955004 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955011 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955016 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955022 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955031 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955041 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955045 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955047 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955051 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955054 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955056 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955059 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955062 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955069 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955071 (Get FASTA)   NCBI Sequence Viewer  
  XP_038955072 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL82921 (Get FASTA)   NCBI Sequence Viewer  
  EDL82922 (Get FASTA)   NCBI Sequence Viewer  
  EDL82923 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_017445331   ⟸   XM_017589842
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445351   ⟸   XM_017589862
- Peptide Label: isoform X19
- UniProtKB: D3ZAY7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017445336   ⟸   XM_017589847
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445335   ⟸   XM_017589846
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017445330   ⟸   XM_017589841
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000071713   ⟸   ENSRNOT00000079688
RefSeq Acc Id: ENSRNOP00000058049   ⟸   ENSRNOT00000061332
RefSeq Acc Id: ENSRNOP00000017412   ⟸   ENSRNOT00000017412
RefSeq Acc Id: ENSRNOP00000017417   ⟸   ENSRNOT00000017417
RefSeq Acc Id: ENSRNOP00000017322   ⟸   ENSRNOT00000017322
RefSeq Acc Id: XP_038955072   ⟸   XM_039099144
- Peptide Label: isoform X22
RefSeq Acc Id: XP_038955071   ⟸   XM_039099143
- Peptide Label: isoform X21
- UniProtKB: D3ZAY2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955069   ⟸   XM_039099141
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038955062   ⟸   XM_039099134
- Peptide Label: isoform X19
- UniProtKB: D3ZAY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955056   ⟸   XM_039099128
- Peptide Label: isoform X17
RefSeq Acc Id: XP_038955054   ⟸   XM_039099126
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038955051   ⟸   XM_039099123
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038955047   ⟸   XM_039099119
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038955016   ⟸   XM_039099088
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038954993   ⟸   XM_039099065
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038955041   ⟸   XM_039099113
- Peptide Label: isoform X12
- UniProtKB: D3ZM69 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038955031   ⟸   XM_039099103
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038954994   ⟸   XM_039099066
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038955022   ⟸   XM_039099094
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038955011   ⟸   XM_039099083
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038955045   ⟸   XM_039099117
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038955026   ⟸   XM_039099098
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038955003   ⟸   XM_039099075
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038954999   ⟸   XM_039099071
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038955004   ⟸   XM_039099076
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038954979   ⟸   XM_039099051
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954986   ⟸   XM_039099058
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038954978   ⟸   XM_039099050
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038955059   ⟸   XM_039099131
- Peptide Label: isoform X18
Protein Domains
FERM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZM69-F1-model_v2 AlphaFold D3ZM69 1-996 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563977 AgrOrtholog
BioCyc Gene G2FUF-62137 BioCyc
Ensembl Genes ENSRNOG00000012346 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017322 ENTREZGENE
  ENSRNOP00000017322.5 UniProtKB/TrEMBL
  ENSRNOP00000017412 ENTREZGENE
  ENSRNOP00000017412.5 UniProtKB/TrEMBL
  ENSRNOP00000017417 ENTREZGENE
  ENSRNOP00000017417.5 UniProtKB/TrEMBL
  ENSRNOP00000058049 ENTREZGENE
  ENSRNOP00000058049.3 UniProtKB/TrEMBL
  ENSRNOP00000071713 ENTREZGENE
  ENSRNOP00000071713.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017322 ENTREZGENE
  ENSRNOT00000017322.7 UniProtKB/TrEMBL
  ENSRNOT00000017412 ENTREZGENE
  ENSRNOT00000017412.7 UniProtKB/TrEMBL
  ENSRNOT00000017417 ENTREZGENE
  ENSRNOT00000017417.6 UniProtKB/TrEMBL
  ENSRNOT00000061332 ENTREZGENE
  ENSRNOT00000061332.6 UniProtKB/TrEMBL
  ENSRNOT00000079688 ENTREZGENE
  ENSRNOT00000079688.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.80.10 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro Band_4.1_C UniProtKB/TrEMBL
  Band_41_domain UniProtKB/TrEMBL
  E41L2 UniProtKB/TrEMBL
  Ez/rad/moesin UniProtKB/TrEMBL
  FERM-adjacent UniProtKB/TrEMBL
  FERM/acyl-CoA-bd_prot_3-hlx UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_central UniProtKB/TrEMBL
  FERM_CS UniProtKB/TrEMBL
  FERM_domain UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  FERM_PH-like_C UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
  Ubiquitin-rel_dom UniProtKB/TrEMBL
NCBI Gene 309557 ENTREZGENE
PANTHER PTHR23280:SF17 UniProtKB/TrEMBL
Pfam 4_1_CTD UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  FERM_M UniProtKB/TrEMBL
  FERM_N UniProtKB/TrEMBL
  PF08736 UniProtKB/TrEMBL
  SAB UniProtKB/TrEMBL
PhenoGen Epb41l2 PhenoGen
PRINTS BAND41 UniProtKB/TrEMBL
  ERMFAMILY UniProtKB/TrEMBL
PROSITE FERM_1 UniProtKB/TrEMBL
  FERM_2 UniProtKB/TrEMBL
  FERM_3 UniProtKB/TrEMBL
SMART B41 UniProtKB/TrEMBL
  FERM_C UniProtKB/TrEMBL
  SM01195 UniProtKB/TrEMBL
Superfamily-SCOP FERM_3-hlx UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0G2K162_RAT UniProtKB/TrEMBL
  D3ZAY2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZAY7 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDT1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZM69 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-14 Epb41l2  erythrocyte membrane protein band 4.1-like 2  Epb4.1l2  erythrocyte membrane protein band 4.1-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Epb4.1l2  erythrocyte membrane protein band 4.1-like 2  RGD1563977_predicted  similar to protein 4.1G (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563977_predicted  similar to protein 4.1G (predicted)  LOC309557  similar to protein 4.1G  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC309557  similar to protein 4.1G      Symbol and Name status set to provisional 70820 PROVISIONAL