Trip13 (thyroid hormone receptor interactor 13) - Rat Genome Database

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Gene: Trip13 (thyroid hormone receptor interactor 13) Rattus norvegicus
Analyze
Symbol: Trip13
Name: thyroid hormone receptor interactor 13
RGD ID: 1308516
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including double-strand break repair; meiosis I; and negative regulation of nuclear division. Predicted to act upstream of or within germ cell development and meiosis I. Predicted to be located in male germ cell nucleus. Predicted to be active in chromosome and nucleus. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome 3. Orthologous to human TRIP13 (thyroid hormone receptor interactor 13); INTERACTS WITH 1-naphthyl isothiocyanate; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC292206; pachytene checkpoint protein 2 homolog; thyroid receptor-interacting protein 13; TR-interacting protein 13; TRIP-13
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2129,357,093 - 29,402,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,357,130 - 29,402,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,158,523 - 29,203,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,158,377 - 35,203,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,359,151 - 29,404,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,967,980 - 32,012,923 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,967,978 - 32,012,919 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,392,425 - 33,437,368 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,165,330 - 30,210,271 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,168,274 - 30,213,214 (+)NCBI
Celera128,006,108 - 28,051,038 (+)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acetohydrazide  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenzo[a,l]pyrene  (ISO)
dibutyl phthalate  (ISO)
dieldrin  (EXP)
diethyl maleate  (EXP)
dioxygen  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
heptachlor  (EXP)
ivermectin  (ISO)
Lasiocarpine  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
linezolid  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
mirex  (EXP)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
niclosamide  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sodium fluoride  (ISO)
sulforaphane  (EXP)
sunitinib  (ISO)
tacrolimus hydrate  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trimellitic anhydride  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IBA,IEA)
male germ cell nucleus  (ISO)
nucleus  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11591653   PMID:12477932   PMID:15489334   PMID:16169070   PMID:16189514   PMID:17696610   PMID:20711356   PMID:25416956   PMID:28553959  


Genomics

Comparative Map Data
Trip13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2129,357,093 - 29,402,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,357,130 - 29,402,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,158,523 - 29,203,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,158,377 - 35,203,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,359,151 - 29,404,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,967,980 - 32,012,923 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,967,978 - 32,012,919 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,392,425 - 33,437,368 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,165,330 - 30,210,271 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,168,274 - 30,213,214 (+)NCBI
Celera128,006,108 - 28,051,038 (+)NCBICelera
Cytogenetic Map1p11NCBI
TRIP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385892,884 - 919,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5892,884 - 919,357 (+)EnsemblGRCh38hg38GRCh38
GRCh375892,999 - 918,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365946,004 - 971,160 (+)NCBINCBI36Build 36hg18NCBI36
Build 345946,003 - 971,158NCBI
Celera5934,119 - 956,942 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5878,510 - 902,319 (+)NCBIHuRef
CHM1_15892,681 - 916,387 (+)NCBICHM1_1
T2T-CHM13v2.05798,936 - 824,664 (+)NCBIT2T-CHM13v2.0
Trip13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,060,577 - 74,085,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,059,466 - 74,085,903 (-)EnsemblGRCm39 Ensembl
GRCm381373,912,450 - 73,937,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,911,347 - 73,937,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,049,910 - 74,075,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,377,349 - 74,403,784 (-)NCBIMGSCv36mm8
Celera1376,242,042 - 76,267,349 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
Trip13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504434,159 - 452,671 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504434,187 - 452,636 (+)NCBIChiLan1.0ChiLan1.0
TRIP13
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11668,664,916 - 68,671,423 (+)NCBINHGRI_mPanPan1
TRIP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,522,940 - 11,539,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,522,940 - 11,539,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,033,842 - 16,050,187 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,424,655 - 11,441,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,424,655 - 11,441,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,475,417 - 11,491,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,455,172 - 11,471,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,665,947 - 11,682,409 (-)NCBIUU_Cfam_GSD_1.0
Trip13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,572,199 - 244,584,096 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815734,167 - 745,092 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815734,029 - 745,381 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,458,847 - 79,473,712 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,458,843 - 79,473,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIP13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14737,214 - 760,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4737,263 - 760,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,288,652 - 35,311,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trip13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751439,119 - 459,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751439,195 - 459,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trip13
190 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:230
Count of miRNA genes:168
Interacting mature miRNAs:184
Transcripts:ENSRNOT00000021532
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat

Markers in Region
RH129445  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2129,375,806 - 29,376,021 (+)MAPPERmRatBN7.2
Rnor_6.0131,986,649 - 31,986,863NCBIRnor6.0
Rnor_5.0133,411,094 - 33,411,308UniSTSRnor5.0
RGSC_v3.4130,183,997 - 30,184,211UniSTSRGSC3.4
Celera128,024,767 - 28,024,981UniSTS
Cytogenetic Map1p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 24 24 18 8 18 45 16 27
Low 2 11 24 15 11 15 3 3 29 12 14 11 3
Below cutoff 8 9 8 8 5 8 7 5

Sequence


RefSeq Acc Id: ENSRNOT00000021532   ⟹   ENSRNOP00000021532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,357,140 - 29,402,074 (+)Ensembl
Rnor_6.0 Ensembl131,967,982 - 32,012,919 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081471   ⟹   ENSRNOP00000070709
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,357,130 - 29,376,156 (+)Ensembl
Rnor_6.0 Ensembl131,967,978 - 31,987,125 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112286   ⟹   ENSRNOP00000076549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,357,140 - 29,402,074 (+)Ensembl
RefSeq Acc Id: NM_001011930   ⟹   NP_001011930
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2129,357,140 - 29,402,078 (+)NCBI
Rnor_6.0131,967,982 - 32,012,923 (+)NCBI
Rnor_5.0133,392,425 - 33,437,368 (+)NCBI
RGSC_v3.4130,165,330 - 30,210,271 (+)RGD
Celera128,006,108 - 28,051,038 (+)RGD
Sequence:
RefSeq Acc Id: XM_008758681   ⟹   XP_008756903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2129,357,093 - 29,376,159 (+)NCBI
Rnor_6.0131,967,980 - 31,987,007 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039103353   ⟹   XP_038959281
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2129,357,093 - 29,387,739 (+)NCBI
RefSeq Acc Id: XM_039103355   ⟹   XP_038959283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2129,357,336 - 29,376,159 (+)NCBI
RefSeq Acc Id: NP_001011930   ⟸   NM_001011930
- UniProtKB: Q5XHZ9 (UniProtKB/Swiss-Prot),   A6JUW1 (UniProtKB/TrEMBL),   A0A8L2R3S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008756903   ⟸   XM_008758681
- Peptide Label: isoform X1
- UniProtKB: Q5XHZ9 (UniProtKB/Swiss-Prot),   A6JUW1 (UniProtKB/TrEMBL),   A0A8L2R3S2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000021532   ⟸   ENSRNOT00000021532
RefSeq Acc Id: ENSRNOP00000070709   ⟸   ENSRNOT00000081471
RefSeq Acc Id: XP_038959281   ⟸   XM_039103353
- Peptide Label: isoform X1
- UniProtKB: Q5XHZ9 (UniProtKB/Swiss-Prot),   A6JUW1 (UniProtKB/TrEMBL),   A0A8L2R3S2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038959283   ⟸   XM_039103355
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000076549   ⟸   ENSRNOT00000112286
Protein Domains
AAA+ ATPase   ATPase AAA-type core

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XHZ9-F1-model_v2 AlphaFold Q5XHZ9 1-432 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689571
Promoter ID:EPDNEW_R88
Type:initiation region
Name:Trip13_1
Description:thyroid hormone receptor interactor 13
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0131,967,966 - 31,968,026EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308516 AgrOrtholog
BioCyc Gene G2FUF-61934 BioCyc
Ensembl Genes ENSRNOG00000015810 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055003289 UniProtKB/Swiss-Prot
  ENSRNOG00060025164 UniProtKB/Swiss-Prot
  ENSRNOG00065018364 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021532 ENTREZGENE
  ENSRNOT00000021532.5 UniProtKB/Swiss-Prot
  ENSRNOT00000081471 ENTREZGENE
  ENSRNOT00000081471.2 UniProtKB/TrEMBL
  ENSRNOT00000112286.1 UniProtKB/TrEMBL
  ENSRNOT00055005102 UniProtKB/Swiss-Prot
  ENSRNOT00060043626 UniProtKB/Swiss-Prot
  ENSRNOT00065030813 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133557 IMAGE-MGC_LOAD
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ATPase_AAA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ClpA/B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pch2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:292206 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:95258 IMAGE-MGC_LOAD
NCBI Gene 292206 ENTREZGENE
PANTHER PACHYTENE CHECKPOINT PROTEIN 2 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45991 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Trip13 PhenoGen
PRINTS CLPPROTEASEA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015810 RatGTEx
  ENSRNOG00055003289 RatGTEx
  ENSRNOG00060025164 RatGTEx
  ENSRNOG00065018364 RatGTEx
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5Y057_RAT UniProtKB/TrEMBL
  A0A8L2R3S2 ENTREZGENE, UniProtKB/TrEMBL
  A6JUW1 ENTREZGENE, UniProtKB/TrEMBL
  PCH2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Trip13  thyroid hormone receptor interactor 13  Trip13_predicted  thyroid hormone receptor interactor 13 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Trip13_predicted  thyroid hormone receptor interactor 13 (predicted)      Symbol and Name status set to approved 70820 APPROVED