Trip13 (thyroid hormone receptor interactor 13) - Rat Genome Database

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Gene: Trip13 (thyroid hormone receptor interactor 13) Mus musculus
Analyze
Symbol: Trip13
Name: thyroid hormone receptor interactor 13
RGD ID: 1318332
MGI Page MGI
Description: Predicted to enable identical protein binding activity. Involved in several processes, including double-strand break repair; meiosis I; and spermatogenesis. Acts upstream of or within germ cell development and meiosis I. Located in male germ cell nucleus. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and sensory organ. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome 3. Orthologous to human TRIP13 (thyroid hormone receptor interactor 13).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2410002G23Rik; D13Ertd328; D13Ertd328e; pachytene checkpoint protein 2 homolog; thyroid receptor-interacting protein 13; TR-interacting protein 13; TRIP-13
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,060,577 - 74,085,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,059,466 - 74,085,903 (-)EnsemblGRCm39 Ensembl
GRCm381373,912,450 - 73,937,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,911,347 - 73,937,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,049,910 - 74,075,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,377,349 - 74,403,784 (-)NCBIMGSCv36mm8
Celera1376,242,042 - 76,267,349 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3-dimethoxynaphthalene-1,4-dione  (ISO)
2-palmitoylglycerol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-methylcholanthrene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acetohydrazide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
arsenite(3-)  (EXP)
arsenous acid  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenzo[a,l]pyrene  (EXP)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
diethyl maleate  (ISO)
dioxygen  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
heptachlor  (ISO)
ivermectin  (ISO)
Lasiocarpine  (ISO)
leflunomide  (ISO)
lidocaine  (ISO)
linezolid  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
mirex  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
niclosamide  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
sulforaphane  (ISO)
sunitinib  (ISO)
tacrolimus hydrate  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trimellitic anhydride  (EXP)
troglitazone  (ISO)
trovafloxacin  (EXP)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone structure  (IEA)
abnormal chiasmata formation  (IAGP)
abnormal chromosomal synapsis  (IAGP)
abnormal coat/hair pigmentation  (IEA)
abnormal digit morphology  (IEA)
abnormal DNA repair  (IAGP)
abnormal double-strand DNA break repair  (IAGP)
abnormal female meiosis  (IAGP)
abnormal iris pigmentation  (IEA)
abnormal lens morphology  (IEA)
abnormal ovary morphology  (IAGP)
abnormal retina blood vessel morphology  (IEA)
abnormal retina morphology  (IEA)
abnormal seminiferous tubule morphology  (IAGP)
abnormal synaptonemal complex  (IAGP)
abnormal tail morphology  (IEA)
absent ovarian follicles  (IAGP)
arrest of male meiosis  (IAGP)
decreased body size  (IAGP)
decreased bone mineral content  (IEA)
decreased bone mineral density  (IEA)
decreased erythrocyte cell number  (IEA)
decreased grip strength  (IEA)
decreased hematocrit  (IEA)
decreased hemoglobin content  (IEA)
decreased lean body mass  (IEA)
decreased locomotor activity  (IEA)
decreased oocyte number  (IAGP)
female infertility  (IEA)
hyperactivity  (IEA)
immotile sperm  (IAGP)
impaired ovarian folliculogenesis  (IAGP)
increased anxiety-related response  (IEA)
increased blood urea nitrogen level  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating cholesterol level  (IEA)
increased circulating HDL cholesterol level  (IEA)
increased circulating serum albumin level  (IEA)
increased fasting circulating glucose level  (IEA)
increased leukocyte cell number  (IEA)
increased mean corpuscular hemoglobin  (IEA)
increased thigmotaxis  (IEA)
increased total body fat amount  (IEA)
increased vertical activity  (IEA)
infertility  (IAGP)
kinked tail  (IAGP)
male infertility  (IEA)
persistence of hyaloid vascular system  (IEA)
postnatal lethality, incomplete penetrance  (IAGP)
prolonged RR interval  (IEA)
short tail  (IAGP)
small gonad  (IAGP)
small ovary  (IAGP)
small testis  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11591653   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17696610   PMID:18287559   PMID:18799693   PMID:19851446   PMID:20059953   PMID:20211142   PMID:20711356   PMID:21267068   PMID:21873635   PMID:22346761  
PMID:23943860   PMID:24105599   PMID:24194600   PMID:24482479   PMID:25078033   PMID:25768017   PMID:26590968   PMID:27113764   PMID:27626380   PMID:28157697   PMID:28256593   PMID:28378742  
PMID:28617799   PMID:28700664   PMID:28844861   PMID:32232159   PMID:34061780   PMID:34321999   PMID:36114006   PMID:38039923  


Genomics

Comparative Map Data
Trip13
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,060,577 - 74,085,855 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,059,466 - 74,085,903 (-)EnsemblGRCm39 Ensembl
GRCm381373,912,450 - 73,937,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1373,911,347 - 73,937,784 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,049,910 - 74,075,215 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,377,349 - 74,403,784 (-)NCBIMGSCv36mm8
Celera1376,242,042 - 76,267,349 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
TRIP13
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385892,884 - 919,348 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5892,884 - 919,357 (+)EnsemblGRCh38hg38GRCh38
GRCh375892,999 - 918,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365946,004 - 971,160 (+)NCBINCBI36Build 36hg18NCBI36
Build 345946,003 - 971,158NCBI
Celera5934,119 - 956,942 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5878,510 - 902,319 (+)NCBIHuRef
CHM1_15892,681 - 916,387 (+)NCBICHM1_1
T2T-CHM13v2.05798,936 - 824,664 (+)NCBIT2T-CHM13v2.0
Trip13
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8131,185,700 - 31,230,638 (+)NCBIGRCr8
mRatBN7.2129,357,093 - 29,402,078 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,357,130 - 29,402,074 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx129,158,523 - 29,203,557 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0135,158,377 - 35,203,413 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,359,151 - 29,404,185 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,967,980 - 32,012,923 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,967,978 - 32,012,919 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,392,425 - 33,437,368 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4130,165,330 - 30,210,271 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1130,168,274 - 30,213,214 (+)NCBI
Celera128,006,108 - 28,051,038 (+)NCBICelera
Cytogenetic Map1p11NCBI
Trip13
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504434,159 - 452,671 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504434,187 - 452,636 (+)NCBIChiLan1.0ChiLan1.0
LOC129394329
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21862,747,149 - 62,752,803 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11668,664,916 - 68,671,423 (+)NCBINHGRI_mPanPan1
TRIP13
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,522,940 - 11,539,885 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,522,940 - 11,539,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,033,842 - 16,050,187 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,424,655 - 11,441,021 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,424,655 - 11,441,021 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,475,417 - 11,491,720 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,455,172 - 11,471,463 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,665,947 - 11,682,409 (-)NCBIUU_Cfam_GSD_1.0
Trip13
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,572,199 - 244,584,096 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815734,167 - 745,092 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815734,029 - 745,381 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRIP13
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,458,847 - 79,473,712 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,458,843 - 79,473,705 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRIP13
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14737,214 - 760,263 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4737,263 - 760,171 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605435,288,652 - 35,311,359 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trip13
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751439,119 - 459,080 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751439,195 - 459,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trip13
815 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:217
Count of miRNA genes:186
Interacting mature miRNAs:200
Transcripts:ENSMUST00000022053
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse

Markers in Region
Trip13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS
cM Map1343.0UniSTS
UniSTS:237054  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381373,921,555 - 73,921,760UniSTSGRCm38
MGSCv371374,059,003 - 74,059,208UniSTSGRCm37
Celera1376,251,136 - 76,251,341UniSTS
Cytogenetic Map13C1UniSTS
cM Map1343.0UniSTS
RH126970  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381373,912,465 - 73,912,670UniSTSGRCm38
MGSCv371374,049,913 - 74,050,118UniSTSGRCm37
Celera1376,242,045 - 76,242,250UniSTS
Cytogenetic Map13C1UniSTS
cM Map1343.0UniSTS
Whitehead/MRC_RH13666.37UniSTS
Trip13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS
Trip13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13C1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000022053   ⟹   ENSMUSP00000022053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,059,466 - 74,085,903 (-)Ensembl
GRCm38.p6 Ensembl1373,911,347 - 73,937,784 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222156   ⟹   ENSMUSP00000152724
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,060,577 - 74,069,333 (-)Ensembl
GRCm38.p6 Ensembl1373,912,458 - 73,921,214 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223017   ⟹   ENSMUSP00000152604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,077,823 - 74,084,316 (-)Ensembl
GRCm38.p6 Ensembl1373,929,704 - 73,936,197 (-)Ensembl
RefSeq Acc Id: NM_001418622   ⟹   NP_001405551
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,060,577 - 74,085,855 (-)NCBI
RefSeq Acc Id: NM_001418623   ⟹   NP_001405552
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,060,577 - 74,085,855 (-)NCBI
RefSeq Acc Id: NM_001418624   ⟹   NP_001405553
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,060,577 - 74,085,855 (-)NCBI
RefSeq Acc Id: NM_027182   ⟹   NP_081458
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,060,577 - 74,085,855 (-)NCBI
GRCm381373,912,462 - 73,937,767 (-)NCBI
MGSCv371374,049,910 - 74,075,215 (-)RGD
Celera1376,242,042 - 76,267,349 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_184787
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,060,577 - 74,085,855 (-)NCBI
RefSeq Acc Id: NP_081458   ⟸   NM_027182
- Peptide Label: isoform 1
- UniProtKB: Q3UQG6 (UniProtKB/Swiss-Prot),   Q05CL4 (UniProtKB/Swiss-Prot),   A0JNT8 (UniProtKB/Swiss-Prot),   Q9CWW8 (UniProtKB/Swiss-Prot),   Q3UA06 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000152604   ⟸   ENSMUST00000223017
RefSeq Acc Id: ENSMUSP00000152724   ⟸   ENSMUST00000222156
RefSeq Acc Id: ENSMUSP00000022053   ⟸   ENSMUST00000022053
RefSeq Acc Id: NP_001405553   ⟸   NM_001418624
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001405552   ⟸   NM_001418623
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001405551   ⟸   NM_001418622
- Peptide Label: isoform 2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3UA06-F1-model_v2 AlphaFold Q3UA06 1-432 view protein structure

Promoters
RGD ID:8680814
Promoter ID:EPDNEW_M18438
Type:single initiation site
Name:Trip13_2
Description:Mus musculus thyroid hormone receptor interactor 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18439  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,929,834 - 73,929,894EPDNEW
RGD ID:8680816
Promoter ID:EPDNEW_M18439
Type:initiation region
Name:Trip13_1
Description:Mus musculus thyroid hormone receptor interactor 13 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18438  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381373,937,736 - 73,937,796EPDNEW
RGD ID:6823743
Promoter ID:MM_KWN:14672
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000022053,   NM_001024508,   UC007REK.1,   UC007REL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361374,075,019 - 74,075,519 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916966 AgrOrtholog
Ensembl Genes ENSMUSG00000021569 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022053 ENTREZGENE
  ENSMUST00000022053.11 UniProtKB/Swiss-Prot
  ENSMUST00000222156.2 UniProtKB/TrEMBL
  ENSMUST00000223017.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  ATPase_AAA_core UniProtKB/Swiss-Prot
  ATPase_AAA_CS UniProtKB/Swiss-Prot
  ClpA/B UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Pch2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69716 UniProtKB/Swiss-Prot
MGD MGI:1916966 ENTREZGENE
NCBI Gene 69716 ENTREZGENE
PANTHER PACHYTENE CHECKPOINT PROTEIN 2 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR45991 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AAA UniProtKB/Swiss-Prot
PhenoGen Trip13 PhenoGen
PRINTS CLPPROTEASEA UniProtKB/Swiss-Prot
PROSITE AAA UniProtKB/Swiss-Prot
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A1Y7VK03_MOUSE UniProtKB/TrEMBL
  A0A1Y7VLR4_MOUSE UniProtKB/TrEMBL
  A0JNT8 ENTREZGENE
  PCH2_MOUSE UniProtKB/Swiss-Prot
  Q05CL4 ENTREZGENE
  Q3UA06 ENTREZGENE
  Q3UQG6 ENTREZGENE
  Q9CWW8 ENTREZGENE
UniProt Secondary A0JNT8 UniProtKB/Swiss-Prot
  Q05CL4 UniProtKB/Swiss-Prot
  Q3UQG6 UniProtKB/Swiss-Prot
  Q9CWW8 UniProtKB/Swiss-Prot