LOC120098792 (developmental pluripotency-associated protein 5A-like) - Rat Genome Database

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Gene: LOC120098792 (developmental pluripotency-associated protein 5A-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120098792
Name: developmental pluripotency-associated protein 5A-like
RGD ID: 41289337
Description: Orthologous to human DPPA5 (developmental pluripotency associated 5).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07071848.1
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,258,366 - 14,262,812 (-)NCBIGRCr8
mRatBN7.2112,438,506 - 12,441,174 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,440,824 - 12,441,286 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl112,440,824 - 12,441,286 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl112,952,553 - 12,952,906 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)

Molecular Function
mRNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120098792
3 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039098731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000078193   ⟹   ENSRNOP00000071223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl112,440,824 - 12,441,286 (-)Ensembl
RefSeq Acc Id: XM_039098731   ⟹   XP_038954659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,258,366 - 14,262,812 (-)NCBI
mRatBN7.2112,438,506 - 12,441,174 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954659 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000071223
  ENSRNOP00000071223.2
Reference Protein Sequences
RefSeq Acc Id: XP_038954659   ⟸   XM_039098731
- UniProtKB: F1LXK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000071223   ⟸   ENSRNOT00000078193
Protein Domains
KH-like RNA-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXK2-F1-model_v2 AlphaFold F1LXK2 1-117 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41289337 AgrOrtholog
BioCyc Gene G2FUF-62283 BioCyc
Ensembl Genes ENSRNOG00000060610 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078193.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
InterPro KH_dom_type_1_sf UniProtKB/TrEMBL
  MOEP19_KH-like UniProtKB/TrEMBL
NCBI Gene LOC120098792 ENTREZGENE
PANTHER DEVELOPMENT PLURPOTENCY-ASSOCIATED PROTEIN 1/5 FAMILY MEMBER UniProtKB/TrEMBL
  DEVELOPMENTAL PLURIPOTENCY-ASSOCIATED 5 PROTEIN UniProtKB/TrEMBL
Pfam MOEP19 UniProtKB/TrEMBL
PhenoGen LOC120098792 PhenoGen
RatGTEx ENSRNOG00000060610 RatGTEx
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt F1LXK2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120098792  developmental pluripotency-associated protein 5A-like  AABR07071848.1    Data merged from RGD:15013456 737654 PROVISIONAL
2021-01-27 LOC120098792  developmental pluripotency-associated protein 5A-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07071848.1        Symbol and Name status set to provisional 45752 PROVISIONAL