Slc9a3 (solute carrier family 9 member A3) - Rat Genome Database

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Gene: Slc9a3 (solute carrier family 9 member A3) Rattus norvegicus
Analyze
Symbol: Slc9a3
Name: solute carrier family 9 member A3
RGD ID: 3720
Description: Enables sodium:proton antiporter activity. Involved in several processes, including regulation of pH; response to glucocorticoid; and sodium ion transport. Located in apical plasma membrane; brush border membrane; and recycling endosome membrane. Used to study hypertension. Biomarker of obesity and renovascular hypertension. Human ortholog(s) of this gene implicated in congenital secretory sodium diarrhea 8. Orthologous to human SLC9A3 (solute carrier family 9 member A3); PARTICIPATES IN endothelin signaling pathway; bile acid transport pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: na(+)/H(+) exchanger 3; NHE-3; Nhe3; plasma membrane ion transport protein; sodium/hydrogen exchanger 3; Solute carrier family 9 (sodium/hydrogen exchanger 3) antiporter 3 Na+/H+ (amiloride insensitive); Solute carrier family 9 (sodium/hydrogen exchanger 3), antiporter 3, Na+/H+ (amiloride insensitive); solute carrier family 9 (sodium/hydrogen exchanger), member 3; solute carrier family 9 member 3; solute carrier family 9, member 3; solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Candidate Gene For: Bp95
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,953,215 - 30,996,209 (-)NCBIGRCr8
mRatBN7.2129,124,633 - 29,167,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,124,674 - 29,167,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,926,541 - 28,969,373 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,926,400 - 34,969,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,127,163 - 29,169,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,731,652 - 31,777,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,734,327 - 31,777,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,159,607 - 33,201,753 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,930,908 - 29,973,686 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,933,852 - 29,976,631 (-)NCBI
Celera127,776,582 - 27,819,219 (-)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
acrylamide  (EXP,ISO)
aldosterone  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP,ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (EXP)
chlorothalonil  (ISO)
choline  (ISO)
cimetidine  (EXP)
cisplatin  (ISO)
clofibrate  (EXP)
copper atom  (EXP)
copper(0)  (EXP)
Cuprizon  (EXP)
DDT  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (ISO)
dimethylarsinic acid  (ISO)
enilconazole  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
GW 4064  (ISO)
hydrogencarbonate  (EXP)
indometacin  (EXP)
L-methionine  (ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
losartan  (ISO)
mercury dichloride  (EXP)
methapyrilene  (ISO)
methylarsonic acid  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
naphthalene  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
piperine  (EXP)
procymidone  (ISO)
reactive nitrogen species  (EXP)
reactive oxygen species  (EXP)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium atom  (EXP)
sodium chloride  (ISO)
sotorasib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
trametinib  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
zinc atom  (EXP)
zinc(0)  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. The epithelial sodium-hydrogen antiporter Na+/H+ exchanger 3 accumulates and is functional in recycling endosomes. D'Souza S, etal., J Biol Chem. 1998 Jan 23;273(4):2035-43. doi: 10.1074/jbc.273.4.2035.
2. Prenatal programming of rat proximal tubule Na+/H+ exchanger by dexamethasone. Dagan A, etal., Am J Physiol Regul Integr Comp Physiol. 2007 Mar;292(3):R1230-5. Epub 2006 Nov 9.
3. Effect of angiotensin-II on renal Na+/H+ exchanger-NHE3 and NHE2. Dixit MP, etal., Biochim Biophys Acta. 2004 Jul 1;1664(1):38-44.
4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5. NHE3 Na+/H+ exchanger supports proximal tubular protein reabsorption in vivo. Gekle M, etal., Am J Physiol Renal Physiol. 2004 Sep;287(3):F469-73. Epub 2004 Apr 27.
6. Upregulation of NHE3 is associated with compensatory cell growth response in young uninephrectomized rats. Girardi AC, etal., Am J Physiol Renal Physiol 2002 Dec;283(6):F1296-303.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. Shank2 associates with and regulates Na+/H+ exchanger 3. Han W, etal., J Biol Chem. 2006 Jan 20;281(3):1461-9. Epub 2005 Nov 17.
9. Activation of Na+/H+ exchanger NHE3 by angiotensin II is mediated by inositol 1,4,5-triphosphate (IP3) receptor-binding protein released with IP3 (IRBIT) and Ca2+/calmodulin-dependent protein kinase II. He P, etal., J Biol Chem. 2010 Sep 3;285(36):27869-78. doi: 10.1074/jbc.M110.133066. Epub 2010 Jun 28.
10. Calcineurin homologous protein isoform 2 (CHP2), Na+/H+ exchangers-binding protein, is expressed in intestinal epithelium. Inoue H, etal., Biol Pharm Bull 2003 Feb;26(2):148-55.
11. Altered expression of Na(+)/H(+) exchanger isoforms 1 and 3 in clipped and unclipped kidneys of a 2-kidney-1-clip Goldblatt model of hypertension. Khan I, etal., Nephron 2002 Oct;92(2):346-55.
12. Demonstration of a functional apical sodium hydrogen exchanger in isolated rat gastric glands. Kirchhoff P, etal., Am J Physiol Gastrointest Liver Physiol. 2003 Dec;285(6):G1242-8. Epub 2003 Aug 7.
13. Acute and Chronic Regulation of the Renal Na/H(+) Exchanger NHE3 in Rats with STZ-Induced Diabetes mellitus. Klisic J, etal., Nephron Physiol. 2005 Oct 19;102(2):p27-p35.
14. BetaPix up-regulates Na+/H+ exchanger 3 through a Shank2-mediated protein-protein interaction. Lee JS, etal., J Biol Chem. 2010 Mar 12;285(11):8104-13. doi: 10.1074/jbc.M109.055079. Epub 2010 Jan 14.
15. Angiotensin II clamp prevents the second step in renal apical NHE3 internalization during acute hypertension. Leong PK, etal., Am J Physiol Renal Physiol 2002 Nov;283(5):F1142-50.
16. Metabolic acidosis in rats increases intestinal NHE2 and NHE3 expression and function. Lucioni A, etal., Am J Physiol Gastrointest Liver Physiol 2002 Jul;283(1):G51-6.
17. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
18. Region-specific adaptation of apical Na/H exchangers after extensive proximal small bowel resection. Musch MW, etal., Am J Physiol Gastrointest Liver Physiol 2002 Oct;283(4):G975-85.
19. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
20. ER function in the adult male rat: short- and long-term effects of the antiestrogen ICI 182,780 on the testis and efferent ductules, without changes in testosterone. Oliveira CA, etal., Endocrinology 2002 Jun;143(6):2399-409.
21. Molecular cloning of putative members of the Na/H exchanger gene family. cDNA cloning, deduced amino acid sequence, and mRNA tissue expression of the rat Na/H exchanger NHE-1 and two structurally related proteins. Orlowski J, etal., J Biol Chem 1992 May 5;267(13):9331-9.
22. Dopamine D3 receptor-mediated inhibition of Na+/H+ exchanger activity in normotensive and spontaneously hypertensive rat proximal tubular epithelial cells. Pedrosa R, etal., Br J Pharmacol. 2004 Aug;142(8):1343-53. Epub 2004 Jul 20.
23. Phospho-NHE3 forms membrane patches and interacts with beta-actin to sense and maintain constant direction during cell migration. Perike S, etal., Exp Cell Res. 2014 May 15;324(1):13-29. doi: 10.1016/j.yexcr.2014.03.005. Epub 2014 Mar 19.
24. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
25. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
26. GOA pipeline RGD automated data pipeline
27. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
28. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
29. Rosiglitazone regulates ENaC and Na-K-2Cl cotransporter (NKCC2) abundance in the obese Zucker rat. Riazi S, etal., Am J Nephrol. 2006;26(3):245-57. Epub 2006 Jun 2.
30. Circadian clock genes directly regulate expression of the Na(+)/H(+) exchanger NHE3 in the kidney. Saifur Rohman M, etal., Kidney Int. 2005 Apr;67(4):1410-9.
31. Role of c-SRC and ERK in acid-induced activation of NHE3. Tsuganezawa H, etal., Kidney Int 2002 Jul;62(1):41-50.
32. Peroxisome proliferator-activated receptor-gamma agonists induce neuroprotection following transient focal ischemia in normotensive, normoglycemic as well as hypertensive and type-2 diabetic rodents. Tureyen K, etal., J Neurochem. 2007 Apr;101(1):41-56.
33. Role of NHE isoforms in mediating bicarbonate reabsorption along the nephron. Wang T, etal., Am J Physiol Renal Physiol 2001 Dec;281(6):F1117-22.
34. Acute hypertension provokes internalization of proximal tubule NHE3 without inhibition of transport activity. Yang L, etal., Am J Physiol Renal Physiol 2002 Apr;282(4):F730-40.
Additional References at PubMed
PMID:8631855   PMID:9933588   PMID:10666043   PMID:11934693   PMID:11954662   PMID:12169661   PMID:12191963   PMID:12427137   PMID:12464626   PMID:12470201   PMID:12657563   PMID:12684793  
PMID:12837683   PMID:15086471   PMID:15113742   PMID:16141316   PMID:16251474   PMID:16267653   PMID:16501490   PMID:16575514   PMID:16757729   PMID:17303069   PMID:17344314   PMID:17977906  
PMID:18067590   PMID:18077600   PMID:18177483   PMID:18256274   PMID:18325982   PMID:18417539   PMID:18420826   PMID:18508879   PMID:19056867   PMID:19064501   PMID:19158399   PMID:19194547  
PMID:19202345   PMID:19338654   PMID:19710385   PMID:19776175   PMID:19805644   PMID:19864301   PMID:20015946   PMID:20926631   PMID:21148403   PMID:21593187   PMID:21613418   PMID:21677414  
PMID:21814178   PMID:23376485   PMID:23402556   PMID:23612977   PMID:23863468   PMID:24118769   PMID:24384423   PMID:24652792   PMID:24666699   PMID:24831004   PMID:25119059   PMID:25298526  
PMID:25656367   PMID:26173747   PMID:26246427   PMID:26260990   PMID:26358773   PMID:26727380   PMID:28126464   PMID:28490531   PMID:29537313   PMID:35076190  


Genomics

Comparative Map Data
Slc9a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,953,215 - 30,996,209 (-)NCBIGRCr8
mRatBN7.2129,124,633 - 29,167,912 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,124,674 - 29,167,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,926,541 - 28,969,373 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,926,400 - 34,969,224 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,127,163 - 29,169,987 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,731,652 - 31,777,144 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,734,327 - 31,777,070 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,159,607 - 33,201,753 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,930,908 - 29,973,686 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,933,852 - 29,976,631 (-)NCBI
Celera127,776,582 - 27,819,219 (-)NCBICelera
Cytogenetic Map1p11NCBI
SLC9A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385470,456 - 524,449 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5470,456 - 524,449 (-)EnsemblGRCh38hg38GRCh38
GRCh375470,571 - 524,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365526,425 - 577,447 (-)NCBINCBI36Build 36hg18NCBI36
Build 345526,424 - 577,447NCBI
Celera5570,966 - 620,781 (-)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5460,638 - 510,183 (-)NCBIHuRef
CHM1_15472,597 - 524,559 (-)NCBICHM1_1
T2T-CHM13v2.05465,265 - 518,871 (-)NCBIT2T-CHM13v2.0
Slc9a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,234,374 - 74,317,561 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,269,576 - 74,317,561 (+)EnsemblGRCm39 Ensembl
GRCm381374,086,255 - 74,169,442 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,121,457 - 74,169,442 (+)EnsemblGRCm38mm10GRCm38
MGSCv371374,258,963 - 74,303,512 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,587,517 - 74,632,066 (+)NCBIMGSCv36mm8
Celera1376,451,103 - 76,495,653 (+)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
Slc9a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504228,049 - 260,650 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955504226,192 - 260,632 (-)NCBIChiLan1.0ChiLan1.0
LOC100988373
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28112,257,212 - 112,299,973 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110112,258,794 - 112,305,293 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05444,720 - 500,121 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15597,897 - 646,108 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5597,897 - 647,464 (-)Ensemblpanpan1.1panPan2
SLC9A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,748,556 - 11,785,209 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,748,175 - 11,785,786 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,258,013 - 16,298,999 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,649,118 - 11,689,897 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,649,113 - 11,690,798 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,699,849 - 11,740,579 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,680,359 - 11,721,422 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,890,462 - 11,930,512 (+)NCBIUU_Cfam_GSD_1.0
Slc9a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,802,254 - 244,839,418 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936815963,715 - 999,280 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936815963,715 - 999,280 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC9A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,666,825 - 79,700,658 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,625,555 - 79,704,084 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103214902
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14362,417 - 408,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4365,135 - 408,033 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606427,500,607 - 27,511,358 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc9a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751256,305 - 291,178 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751254,373 - 290,218 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc9a3
263 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:363
Count of miRNA genes:206
Interacting mature miRNAs:252
Transcripts:ENSRNOT00000020711
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat

Markers in Region
RH94714  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2129,125,783 - 29,125,983 (+)MAPPERmRatBN7.2
Rnor_6.0131,735,437 - 31,735,636NCBIRnor6.0
Rnor_5.0133,160,717 - 33,160,916UniSTSRnor5.0
RGSC_v3.4129,932,018 - 29,932,217UniSTSRGSC3.4
Celera127,777,692 - 27,777,891UniSTS
Cytogenetic Map1p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 33 85 57 55 25 21 25 6 159 76 65 41 47 30

Sequence


Ensembl Acc Id: ENSRNOT00000020711   ⟹   ENSRNOP00000020711
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,124,674 - 29,167,417 (-)Ensembl
Rnor_6.0 Ensembl131,734,327 - 31,777,070 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094251   ⟹   ENSRNOP00000083053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl129,126,899 - 29,167,417 (-)Ensembl
RefSeq Acc Id: NM_001414040   ⟹   NP_001400969
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8130,953,216 - 30,996,002 (-)NCBI
mRatBN7.2129,124,641 - 29,167,427 (-)NCBI
RefSeq Acc Id: NM_012654   ⟹   NP_036786
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8130,953,216 - 30,996,002 (-)NCBI
mRatBN7.2129,124,641 - 29,167,427 (-)NCBI
Rnor_6.0131,734,327 - 31,777,070 (-)NCBI
Rnor_5.0133,159,607 - 33,201,753 (-)NCBI
RGSC_v3.4129,930,908 - 29,973,686 (-)RGD
Celera127,776,582 - 27,819,219 (-)RGD
Sequence:
RefSeq Acc Id: XM_039100846   ⟹   XP_038956774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8130,953,215 - 30,996,209 (-)NCBI
mRatBN7.2129,124,633 - 29,167,912 (-)NCBI
RefSeq Acc Id: NP_036786   ⟸   NM_012654
- Peptide Label: precursor
- UniProtKB: P26433 (UniProtKB/Swiss-Prot),   G3V7Y7 (UniProtKB/TrEMBL),   A6JUV3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020711   ⟸   ENSRNOT00000020711
RefSeq Acc Id: XP_038956774   ⟸   XM_039100846
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZZ59 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083053   ⟸   ENSRNOT00000094251
RefSeq Acc Id: NP_001400969   ⟸   NM_001414040
- Peptide Label: precursor
- UniProtKB: P26433 (UniProtKB/Swiss-Prot),   G3V7Y7 (UniProtKB/TrEMBL),   A6JUV3 (UniProtKB/TrEMBL)
Protein Domains
Cation/H+ exchanger

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P26433-F1-model_v2 AlphaFold P26433 1-831 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689560
Promoter ID:EPDNEW_R83
Type:initiation region
Name:Slc9a3_1
Description:solute carrier family 9 member A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0131,777,078 - 31,777,138EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3720 AgrOrtholog
BioCyc Gene G2FUF-61939 BioCyc
Ensembl Genes ENSRNOG00000015159 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000020711.4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOT00000094251.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cation/H_exchanger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cation/H_exchanger_CPA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/H_exchanger_3/5 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NaH_exchanger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:24784 UniProtKB/Swiss-Prot
NCBI Gene 24784 ENTREZGENE
PANTHER PTHR10110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SODIUM/HYDROGEN EXCHANGER 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Na_H_Exchanger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc9a3 PhenoGen
PRINTS NAHEXCHNGR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAHEXCHNGR3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015159 RatGTEx
UniProt A0A8I5ZZ59 ENTREZGENE, UniProtKB/TrEMBL
  A6JUV3 ENTREZGENE, UniProtKB/TrEMBL
  G3V7Y7 ENTREZGENE, UniProtKB/TrEMBL
  P26433 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-01 Slc9a3  solute carrier family 9 member A3  Slc9a3  solute carrier family 9 member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-24 Slc9a3  solute carrier family 9 member 3  Slc9a3  solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-16 Slc9a3  solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3  Slc9a3  solute carrier family 9 (sodium/hydrogen exchanger), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Slc9a3  solute carrier family 9 (sodium/hydrogen exchanger), member 3    solute carrier family 9, member 3  Name updated 1299863 APPROVED
2003-04-09 Slc9a3  solute carrier family 9, member 3    Solute carrier family 9 (sodium/hydrogen exchanger 3), antiporter 3, Na+/H+ (amiloride insensitive)  Name updated 629478 APPROVED
2002-06-10 Slc9a3  Solute carrier family 9 (sodium/hydrogen exchanger 3), antiporter 3, Na+/H+ (amiloride insensitive)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_disease associated with chronic metabolic acidosis 628393
gene_disease decreased localization to the renal proximal tubule apical brush border is associated with a model of acute hypertension 737665
gene_drugs administration of the antiestrogen ICI 182,780 decreases the levels of mRNA and protein 628393
gene_drugs selective inhibitor S3226 blocks activity and growth response in young uninephrectomized rats 628393
gene_expression expressed in the proximal tubule of the kidney 628393
gene_expression expressed in the small and large intestine 628393
gene_process facilitates increased absorption of NaCl in the intestine 625757
gene_process facilitates the hyperplastic/hypertrophic response in different cell types 628529
gene_process mediates fluid and electrolyte reabsorption in the efferent ductules 628393
gene_regulation estrogen receptor (ER) is required for the expression and function 628393
gene_regulation activity is regulated by physiological stimuli, glucorticoids, aldosterone, and other neurohormones and also by signal transduction pathways that involve protein kinase C, cAMP, cGMP, intracellular calcium and accessory proteins such as NHE regulatory fac 628393
gene_regulation increased acidosis reported in rats after 6 days of treatment with ammonium chloride resulted in enhanced exchanger activity 628393
gene_regulation significant increase in the mRNA is observed in the uninephrectomized rats 628393
gene_regulation after the removal of the renal mass the activity of the apical membrane exchanger is increased 628393