LOC108349492 (uncharacterized LOC108349492) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC108349492 (uncharacterized LOC108349492) Rattus norvegicus
Analyze
Symbol: LOC108349492
Name: uncharacterized LOC108349492
RGD ID: 11357155
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,047,414 - 14,056,689 (+)NCBIGRCr8
mRatBN7.2112,227,718 - 12,234,666 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0112,737,988 - 12,748,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera110,691,972 - 10,702,929 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




.

.
Variants in LOC108349492
48 total Variants

1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat

1 to 10 of 26 rows






RefSeq Acc Id: XR_005497243
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,047,427 - 14,056,689 (+)NCBI
mRatBN7.2112,227,718 - 12,234,666 (+)NCBI
RefSeq Acc Id: XR_010062775
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,047,414 - 14,051,606 (+)NCBI
RefSeq Acc Id: XR_010062776
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8114,047,428 - 14,056,689 (+)NCBI


Database
Acc Id
Source(s)
BioCyc Gene G2FUF-62295 BioCyc
NCBI Gene LOC108349492 ENTREZGENE
PhenoGen LOC108349492 PhenoGen
RNAcentral URS0000CCF0D0 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108349492  uncharacterized LOC108349492      Symbol and Name status set to provisional 70820 PROVISIONAL