LOC120100430 (small nucleolar RNA SNORA17) - Rat Genome Database

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Gene: LOC120100430 (small nucleolar RNA SNORA17) Rattus norvegicus
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Symbol: LOC120100430
Name: small nucleolar RNA SNORA17
RGD ID: 41355366
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AABR07000304.1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8111,203,598 - 11,203,728 (+)NCBIGRCr8
mRatBN7.219,383,523 - 9,383,653 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19,383,523 - 9,383,653 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl19,201,884 - 9,202,014 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model




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1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat

1 to 10 of 15 rows





RefSeq Transcripts XR_005500187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000089566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19,383,523 - 9,383,653 (+)Ensembl
RefSeq Acc Id: XR_005500187
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8111,203,598 - 11,203,728 (+)NCBI
mRatBN7.219,383,523 - 9,383,653 (+)NCBI

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



Database
Acc Id
Source(s)
BioCyc Gene G2FUF-62337 BioCyc
Ensembl Genes ENSRNOG00000059930 Ensembl
NCBI Gene LOC120100430 ENTREZGENE
PhenoGen LOC120100430 PhenoGen
RatGTEx ENSRNOG00000059930 RatGTEx
RNAcentral URS0000674E87 RNACentral


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120100430  small nucleolar RNA SNORA17  AABR07000304.1    Data merged from RGD:15012935 737654 PROVISIONAL
2021-01-27 LOC120100430  small nucleolar RNA SNORA17      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07000304.1        Symbol and Name status set to provisional 45752 PROVISIONAL