Iyd (iodotyrosine deiodinase) - Rat Genome Database

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Gene: Iyd (iodotyrosine deiodinase) Rattus norvegicus
Analyze
Symbol: Iyd
Name: iodotyrosine deiodinase
RGD ID: 1309288
Description: Predicted to enable FMN binding activity and iodotyrosine deiodinase activity. Predicted to be involved in thyroid hormone metabolic process and tyrosine metabolic process. Predicted to be located in cytoplasmic vesicle membrane and nucleoplasm. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in thyroid dyshormonogenesis 4. Orthologous to human IYD (iodotyrosine deiodinase); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: iodotyrosine dehalogenase 1; iodotyrosine deiodinase 1; IYD-1; LOC308129; MGC109018; RGD1309288; similar to RIKEN cDNA 0610009A07
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,410,099 - 42,425,414 (+)NCBIGRCr8
mRatBN7.2140,003,999 - 40,019,323 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl140,004,041 - 40,019,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx140,523,642 - 40,538,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,510,840 - 46,526,081 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0140,606,684 - 40,621,964 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0140,086,513 - 40,100,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl140,086,470 - 40,101,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0141,435,347 - 41,449,800 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4134,244,640 - 34,259,649 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1134,247,584 - 34,262,592 (+)NCBI
Celera135,702,067 - 35,717,263 (+)NCBICelera
Cytogenetic Map1p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IydRatchromosome 6q24-q25 deletion syndrome  ISORGD:13458688554872ClinVar Annotator: match by term: Chromosome 6q24-q25 deletion syndromeClinVarPMID:25741868|PMID:38177409
IydRatcongenital hypothyroidism  ISORGD:13458688554872ClinVar Annotator: match by term: Congenital hypothyroidismClinVarPMID:25741868
IydRatthyroid dyshormonogenesis 4  ISORGD:13458688554872ClinVar Annotator: match by term: DEIODINASE DEFICIENCY | ClinVar Annotator: match by term: IYD-related condition more ...ClinVarPMID:13183981|PMID:13333116|PMID:18434651|PMID:18765512|PMID:25741868|PMID:28106320|PMID:28492532|PMID:36633921
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IydRatExperimental Liver Cirrhosis  ISORGD:134586811554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
IydRatthyroid dyshormonogenesis 4  ISORGD:134586811554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IydRatthyroid dyshormonogenesis 4  ISORGD:13458687240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IydRat(+)-schisandrin B multiple interactionsEXP 6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of IYD mRNA]CTDPMID:31150632
IydRat(1->4)-beta-D-glucan multiple interactionsISORGD:13195536480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in decreased expression of IYD mRNACTDPMID:36331819
IydRat1,2-dinitrobenzene multiple interactionsISORGD:134586864804641,2-dinitrobenzene inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat1,4-bis(2-ethylhexyl) sulfosuccinate multiple interactionsISORGD:13458686480464Dioctyl Sulfosuccinic Acid inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat1-monolauroylglycerol multiple interactionsISORGD:134586864804641-monomyristin inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of IYD mRNACTDPMID:25380136
IydRat17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of IYD mRNACTDPMID:32145629
IydRat17beta-estradiol decreases expressionISORGD:13195536480464Estradiol results in decreased expression of IYD mRNACTDPMID:39298647
IydRat2,2',4,5'-Tetrabromodiphenyl ether decreases activityISORGD:134586864804642,2',4,5'-tetrabromodiphenyl ether analog results in decreased activity of IYD proteinCTDPMID:24012475
IydRat2,2'-Methylenebis(4-methyl-6-tert-butylphenol) multiple interactionsISORGD:134586864804642,2'-methylenebis(4-methyl-6-tert-butylphenol) inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13458686480464Tetrachlorodibenzodioxin affects the expression of IYD mRNACTDPMID:22298810
IydRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of IYD mRNACTDPMID:21215274
IydRat2,4,5-trichlorophenol multiple interactionsISORGD:134586864804642,4,5-trichlorophenol inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat2,4-di-tert-butylphenol multiple interactionsISORGD:134586864804642,4-di-tert-butylphenol inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat2,6-di-tert-butylphenol multiple interactionsISORGD:134586864804642,6-di-tert-butylphenol inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat3,3',4',5-tetrachlorosalicylanilide multiple interactionsISORGD:134586864804643,3',4',5-tetrachlorosalicylanilide inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat3,3',5,5'-tetrabromobisphenol A multiple interactionsISORGD:13458686480464tetrabromobisphenol A inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat3-nitrotyrosine multiple interactionsISORGD:134586864804643-nitrotyrosine inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258
IydRat4,4'-sulfonyldiphenol decreases expressionISORGD:13195536480464bisphenol S results in decreased expression of IYD mRNACTDPMID:39298647
IydRat4,5-dichloro-2-n-octyl-3(2H)-isothiazolone multiple interactionsISORGD:13458686480464Kathon 930 inhibits the reaction [IYD protein results in increased metabolism of Monoiodotyrosine]CTDPMID:33352258

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Biological Process
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Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IydRatthyroid hormone metabolic process involved_inISSUniProtKB:Q6PHW01600115GO_REF:0000024UniProtGO_REF:0000024
IydRatthyroid hormone metabolic process involved_inIBAPANTHER:PTN000546577|UniProtKB:Q6PHW0|UniProtKB:Q6TA491600115GO_REF:0000033GO_CentralGO_REF:0000033
IydRatthyroid hormone metabolic process involved_inISORGD:13458681624291 PMID:25395621RGDPMID:25395621
IydRatthyroid hormone metabolic process involved_inISORGD:141369431624291 PMID:25395621RGDPMID:25395621
IydRattyrosine metabolic process involved_inISORGD:13458681624291 PMID:25395621, PMID:28157283RGDPMID:25395621|PMID:28157283
IydRattyrosine metabolic process involved_inIEAUniProtKB:Q9DCX8|ensembl:ENSMUSP000000198961600115GO_REF:0000107EnsemblGO_REF:0000107
IydRattyrosine metabolic process involved_inIBAMGI:1917587|PANTHER:PTN001125810|UniProtKB:Q6PHW0|UniProtKB:Q6TA491600115GO_REF:0000033GO_CentralGO_REF:0000033
IydRattyrosine metabolic process involved_inISORGD:13195531624291 PMID:19777994RGDPMID:19777994
IydRattyrosine metabolic process involved_inISORGD:141369431624291 PMID:25395621RGDPMID:25395621
IydRattyrosine metabolic process involved_inISSUniProtKB:Q6PHW01600115GO_REF:0000024UniProtGO_REF:0000024
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Cellular Component
1 to 13 of 13 rows

  
Object Symbol
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Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
IydRatcytoplasmic vesicle located_inIEAUniProtKB-KW:KW-09681600115GO_REF:0000043UniProtGO_REF:0000043
IydRatcytoplasmic vesicle membrane located_inISORGD:13458681624291 PMID:15289438RGDPMID:15289438
IydRatcytoplasmic vesicle membrane located_inIEAUniProtKB-SubCell:SL-00891600115GO_REF:0000044UniProtGO_REF:0000044
IydRatcytoplasmic vesicle membrane located_inISSUniProtKB:Q6PHW01600115GO_REF:0000024UniProtGO_REF:0000024
IydRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
IydRatnucleoplasm located_inISORGD:1345868|UniProtKB:Q6PHW0-1|UniProtKB:Q6PHW0-3|UniProtKB:Q6PHW0-41624291 RGDGO_REF:0000052
IydRatplasma membrane is_active_inIBAPANTHER:PTN001125810|UniProtKB:Q6PHW0|UniProtKB:Q6TA491600115GO_REF:0000033GO_CentralGO_REF:0000033
IydRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
IydRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
IydRatplasma membrane located_inISSUniProtKB:Q6PHW01600115GO_REF:0000024UniProtGO_REF:0000024
IydRatplasma membrane located_inISORGD:1345868|UniProtKB:Q6PHW0-1|UniProtKB:Q6PHW0-3|UniProtKB:Q6PHW0-41624291 RGDGO_REF:0000052
IydRatplasma membrane located_inISORGD:13458681624291 PMID:15289438RGDPMID:15289438
IydRatplasma membrane located_inISORGD:141369431624291 PMID:15289438RGDPMID:15289438
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Molecular Function
1 to 16 of 16 rows

  
Object Symbol
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Reference
Notes
Source
Original Reference(s)
IydRatFMN binding enablesISSUniProtKB:Q6PHW01600115GO_REF:0000024UniProtGO_REF:0000024
IydRatFMN binding enablesIEAUniProtKB:Q9DCX8|ensembl:ENSMUSP000000198961600115GO_REF:0000107EnsemblGO_REF:0000107
IydRatFMN binding enablesISORGD:13195531624291 PMID:19777994RGDPMID:19777994
IydRatFMN binding enablesISORGD:13458681624291 PMID:25395621, PMID:28157283RGDPMID:25395621|PMID:28157283
IydRatiodotyrosine deiodinase activity enablesISORGD:141369431624291 PMID:16316988, PMID:25395621RGDPMID:16316988|PMID:25395621
IydRatiodotyrosine deiodinase activity enablesIEAARBA:ARBA000341761600115GO_REF:0000117UniProtGO_REF:0000117
IydRatiodotyrosine deiodinase activity enablesIEAUniProtKB:Q9DCX8|ensembl:ENSMUSP000000198961600115GO_REF:0000107EnsemblGO_REF:0000107
IydRatiodotyrosine deiodinase activity enablesIEARHEA:324791600115GO_REF:0000116RHEAGO_REF:0000116
IydRatiodotyrosine deiodinase activity enablesIEAEC:1.21.1.11600115GO_REF:0000003UniProtGO_REF:0000003
IydRatiodotyrosine deiodinase activity enablesISORGD:13195531624291 PMID:16316988, PMID:19777994RGDPMID:16316988|PMID:19777994
IydRatiodotyrosine deiodinase activity enablesISORGD:13458681624291 PMID:15289438, PMID:18434651, PMID:25395621, PMID:28157283RGDPMID:15289438|PMID:18434651|PMID:25395621|PMID:28157283
IydRatiodotyrosine deiodinase activity enablesISSUniProtKB:Q6PHW01600115GO_REF:0000024UniProtGO_REF:0000024
IydRatoxidoreductase activity enablesIEAInterPro:IPR0004151600115GO_REF:0000002InterProGO_REF:0000002
IydRatoxidoreductase activity enablesIEAUniProtKB-KW:KW-05601600115GO_REF:0000043UniProtGO_REF:0000043
IydRatoxidoreductase activity enablesIBAFB:FBgn0286980|MGI:1917587|PANTHER:PTN000546607|UniProtKB:A7S5D9|UniProtKB:E9FR69|UniProtKB:P38489|UniProtKB:Q6PHW0|UniProtKB:Q6TA49|ZFIN:ZDB-GENE-090313-3111600115GO_REF:0000033GO_CentralGO_REF:0000033
IydRatprotein binding enablesISORGD:13458681624291UniProtKB:Q86WT6|UniProtKB:Q86WT6-2 PMID:25416956, PMID:25910212RGDPMID:25416956|PMID:25910212
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#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:15289438   PMID:15489334   PMID:16316988   PMID:25395621   PMID:25850545  



Iyd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,410,099 - 42,425,414 (+)NCBIGRCr8
mRatBN7.2140,003,999 - 40,019,323 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl140,004,041 - 40,019,319 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx140,523,642 - 40,538,881 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0146,510,840 - 46,526,081 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0140,606,684 - 40,621,964 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0140,086,513 - 40,100,966 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl140,086,470 - 40,101,840 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0141,435,347 - 41,449,800 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4134,244,640 - 34,259,649 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1134,247,584 - 34,262,592 (+)NCBI
Celera135,702,067 - 35,717,263 (+)NCBICelera
Cytogenetic Map1p11NCBI
IYD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386150,369,012 - 150,405,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6150,368,892 - 150,405,969 (+)EnsemblGRCh38hg38GRCh38
GRCh376150,690,148 - 150,727,105 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366150,731,721 - 150,767,457 (+)NCBINCBI36Build 36hg18NCBI36
Build 346150,782,141 - 150,817,878NCBI
Celera6151,424,947 - 151,460,709 (+)NCBICelera
Cytogenetic Map6q25.1NCBI
HuRef6148,255,114 - 148,290,675 (+)NCBIHuRef
CHM1_16150,954,100 - 150,989,630 (+)NCBICHM1_1
T2T-CHM13v2.06151,569,713 - 151,606,528 (+)NCBIT2T-CHM13v2.0
Iyd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39103,490,274 - 3,504,880 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl103,490,240 - 3,504,877 (+)EnsemblGRCm39 Ensembl
GRCm38103,540,274 - 3,554,880 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl103,540,240 - 3,554,877 (+)EnsemblGRCm38mm10GRCm38
MGSCv37106,791,664 - 6,806,262 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36106,791,664 - 6,806,262 (-)NCBIMGSCv36mm8
Celera103,484,500 - 3,499,071 (+)NCBICelera
Cytogenetic Map10A1NCBI
cM Map102.06NCBI
Iyd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543911,033,302 - 11,060,150 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543910,998,797 - 11,060,078 (-)NCBIChiLan1.0ChiLan1.0
IYD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25170,384,566 - 170,422,587 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16168,278,049 - 168,316,060 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06148,178,638 - 148,216,122 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16152,886,367 - 152,922,152 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6152,886,373 - 152,922,152 (+)Ensemblpanpan1.1panPan2
IYD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1140,890,402 - 40,908,437 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl140,890,435 - 40,908,439 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha141,728,455 - 41,748,252 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0141,072,192 - 41,090,715 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl141,072,213 - 41,090,215 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1140,947,672 - 40,967,446 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0140,791,294 - 40,809,809 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0141,295,459 - 41,313,980 (+)NCBIUU_Cfam_GSD_1.0
Iyd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946136,202,719 - 136,221,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364893,454,757 - 3,472,474 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364893,454,757 - 3,472,423 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IYD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl115,756,550 - 15,779,164 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1115,756,536 - 15,779,380 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,891,407 - 17,908,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IYD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11377,794,539 - 77,828,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1377,795,079 - 77,822,379 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604050,104,222 - 50,134,595 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Iyd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247857,800,408 - 7,824,647 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247857,799,975 - 7,824,611 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Iyd
25 total Variants

Predicted Target Of
Summary Value
Count of predictions:44
Count of miRNA genes:40
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000021895
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat

1 to 10 of 41 rows
RH132943  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2140,018,919 - 40,019,124 (+)MAPPERmRatBN7.2
Rnor_6.0140,100,563 - 40,100,767NCBIRnor6.0
Rnor_5.0141,449,397 - 41,449,601UniSTSRnor5.0
RGSC_v3.4134,259,246 - 34,259,450UniSTSRGSC3.4
Celera135,716,860 - 35,717,064UniSTS
Cytogenetic Map1p11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
8 4 32 84 82 86 59 9 59 5 162 51 71 40 31 27



Ensembl Acc Id: ENSRNOT00000021895   ⟹   ENSRNOP00000021893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl140,004,041 - 40,019,319 (+)Ensembl
Rnor_6.0 Ensembl140,086,470 - 40,101,840 (+)Ensembl
RefSeq Acc Id: NM_001025000   ⟹   NP_001020171
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,410,138 - 42,425,414 (+)NCBI
mRatBN7.2140,004,041 - 40,019,323 (+)NCBI
Rnor_6.0140,086,513 - 40,100,966 (+)NCBI
Rnor_5.0141,435,347 - 41,449,800 (+)NCBI
RGSC_v3.4134,244,640 - 34,259,649 (+)RGD
Celera135,702,067 - 35,717,263 (+)RGD
Sequence:
RefSeq Acc Id: XM_039110644   ⟹   XP_038966572
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8142,410,099 - 42,425,414 (+)NCBI
mRatBN7.2140,003,999 - 40,018,788 (+)NCBI
Protein RefSeqs NP_001020171 (Get FASTA)   NCBI Sequence Viewer  
  XP_038966572 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91241 (Get FASTA)   NCBI Sequence Viewer  
  EDL92877 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021893
  ENSRNOP00000021893.4
GenBank Protein Q5BK17 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001020171   ⟸   NM_001025000
- UniProtKB: Q5BK17 (UniProtKB/Swiss-Prot),   A6KIK2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021893   ⟸   ENSRNOT00000021895
RefSeq Acc Id: XP_038966572   ⟸   XM_039110644
- Peptide Label: isoform X1
Nitroreductase

Name Modeler Protein Id AA Range Protein Structure
AF-Q5BK17-F1-model_v2 AlphaFold Q5BK17 1-285 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689582
Promoter ID:EPDNEW_R107
Type:multiple initiation site
Name:Iyd_1
Description:iodotyrosine deiodinase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0140,086,503 - 40,086,563EPDNEW


1 to 20 of 20 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-61731 BioCyc
Ensembl Genes ENSRNOG00000016286 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021895 ENTREZGENE
  ENSRNOT00000021895.8 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.109.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7326298 IMAGE-MGC_LOAD
InterPro Nitroreductase UniProtKB/Swiss-Prot
  Nitroreductase-like UniProtKB/Swiss-Prot
  Nitroreductase/BluB UniProtKB/Swiss-Prot
KEGG Report rno:308129 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109018 IMAGE-MGC_LOAD
NCBI Gene 308129 ENTREZGENE
PANTHER IODOTYROSINE DEIODINASE 1 UniProtKB/Swiss-Prot
  NADPH NITROREDUCTASE UniProtKB/Swiss-Prot
Pfam Nitroreductase UniProtKB/Swiss-Prot
PhenoGen Iyd PhenoGen
RatGTEx ENSRNOG00000016286 RatGTEx
Superfamily-SCOP SSF55469 UniProtKB/Swiss-Prot
UniProt A6KIK2 ENTREZGENE, UniProtKB/TrEMBL
  IYD1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
1 to 20 of 20 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-26 Iyd  iodotyrosine deiodinase  RGD1309288  similar to RIKEN cDNA 0610009A07  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1309288  similar to RIKEN cDNA 0610009A07  RGD1309288_predicted  similar to RIKEN cDNA 0610009A07 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1309288_predicted  similar to RIKEN cDNA 0610009A07 (predicted)  LOC308129_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC308129_predicted  similar to RIKEN cDNA 0610009A07 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL