Map7 (microtubule-associated protein 7) - Rat Genome Database

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Gene: Map7 (microtubule-associated protein 7) Rattus norvegicus
Analyze
Symbol: Map7
Name: microtubule-associated protein 7
RGD ID: 1308866
Description: Predicted to enable signaling receptor binding activity. Predicted to be involved in microtubule cytoskeleton organization and protein localization to plasma membrane. Predicted to act upstream of or within several processes, including glycosphingolipid metabolic process; male gonad development; and response to retinoic acid. Located in axon. Orthologous to human MAP7 (microtubule associated protein 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ensconsin; LOC293016; Mtap7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2114,910,433 - 15,037,574 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,910,551 - 15,037,574 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx114,664,530 - 14,792,774 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0120,666,457 - 20,794,703 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0114,890,419 - 15,017,466 (+)NCBIRnor_WKY
Rnor_6.0115,620,665 - 15,748,203 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,620,653 - 15,748,203 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0117,189,224 - 17,293,867 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4115,440,422 - 15,553,260 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1115,505,838 - 15,553,312 (+)NCBI
Celera113,364,562 - 13,469,230 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
aristolochic acid  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
colforsin daropate hydrochloride  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
etoposide  (ISO)
fenvalerate  (EXP)
flutamide  (EXP)
gentamycin  (EXP)
isoprenaline  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
manganese(II) chloride  (EXP)
medroxyprogesterone acetate  (ISO)
mercury dibromide  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methylmercury chloride  (ISO)
mitomycin C  (ISO)
ozone  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
sevoflurane  (EXP)
sodium arsenate  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. MAP2 Defines a Pre-axonal Filtering Zone to Regulate KIF1- versus KIF5-Dependent Cargo Transport in Sensory Neurons. Gumy LF, etal., Neuron. 2017 Apr 19;94(2):347-362.e7. doi: 10.1016/j.neuron.2017.03.046.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10837026   PMID:14517216   PMID:18308723   PMID:25931508   PMID:28069923   PMID:30132755  


Genomics

Comparative Map Data
Map7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2114,910,433 - 15,037,574 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl114,910,551 - 15,037,574 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx114,664,530 - 14,792,774 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0120,666,457 - 20,794,703 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0114,890,419 - 15,017,466 (+)NCBIRnor_WKY
Rnor_6.0115,620,665 - 15,748,203 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl115,620,653 - 15,748,203 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0117,189,224 - 17,293,867 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4115,440,422 - 15,553,260 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1115,505,838 - 15,553,312 (+)NCBI
Celera113,364,562 - 13,469,230 (+)NCBICelera
Cytogenetic Map1p12NCBI
MAP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386136,342,734 - 136,550,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6136,342,281 - 136,550,819 (-)EnsemblGRCh38hg38GRCh38
GRCh376136,663,872 - 136,871,560 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366136,705,565 - 136,913,485 (-)NCBINCBI36Build 36hg18NCBI36
Build 346136,705,565 - 136,913,485NCBI
Celera6137,404,328 - 137,612,277 (-)NCBICelera
Cytogenetic Map6q23.3NCBI
HuRef6134,227,897 - 134,436,269 (-)NCBIHuRef
CHM1_16136,925,972 - 137,134,594 (-)NCBICHM1_1
T2T-CHM13v2.06137,530,867 - 137,738,614 (-)NCBIT2T-CHM13v2.0
Map7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391020,024,666 - 20,157,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1020,024,217 - 20,157,336 (+)EnsemblGRCm39 Ensembl
GRCm381020,148,920 - 20,281,590 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1020,148,471 - 20,281,590 (+)EnsemblGRCm38mm10GRCm38
MGSCv371019,868,726 - 20,001,396 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361019,838,430 - 19,970,122 (+)NCBIMGSCv36mm8
Celera1020,035,994 - 20,170,438 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map109.75NCBI
Map7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955439404,212 - 548,732 (+)NCBIChiLan1.0ChiLan1.0
MAP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16138,193,074 - 138,401,302 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v06134,102,927 - 134,312,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MAP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1128,933,422 - 29,101,944 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl128,934,761 - 29,101,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha129,812,265 - 29,984,694 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0129,089,524 - 29,262,570 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl129,089,108 - 29,262,496 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1128,975,666 - 29,148,139 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0128,860,490 - 29,033,011 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0129,159,126 - 29,332,118 (-)NCBIUU_Cfam_GSD_1.0
Map7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946124,031,925 - 124,178,791 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365603,811,021 - 3,958,007 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl127,606,036 - 27,782,747 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1127,606,021 - 27,782,754 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,195,099 - 31,237,583 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MAP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11336,863,546 - 37,073,861 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1336,888,942 - 37,075,818 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660409,047,411 - 9,259,093 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Map7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248861,216,878 - 1,360,123 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248861,194,440 - 1,359,644 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
D1Got17  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0115,734,553 - 15,734,819NCBIRnor6.0
Rnor_5.0117,280,289 - 17,280,483UniSTSRnor5.0
RGSC_v3.4115,539,415 - 15,539,874UniSTSRGSC3.4
RGSC_v3.1115,539,476 - 15,539,936RGD
RH 3.4 Map1147.11RGD
RH 3.4 Map1147.11UniSTS
RH 2.0 Map166.6RGD
Cytogenetic Map1p12UniSTS
RH137465  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2115,019,898 - 15,020,082 (+)MAPPERmRatBN7.2
Rnor_6.0115,730,528 - 15,730,711NCBIRnor6.0
Rnor_5.0117,276,264 - 17,276,447UniSTSRnor5.0
RGSC_v3.4115,535,390 - 15,535,573UniSTSRGSC3.4
Cytogenetic Map1p12UniSTS
RH141937  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2115,037,118 - 15,037,308 (+)MAPPERmRatBN7.2
Rnor_6.0115,747,748 - 15,747,937NCBIRnor6.0
Rnor_5.0117,293,412 - 17,293,601UniSTSRnor5.0
RGSC_v3.4115,552,803 - 15,552,992UniSTSRGSC3.4
Celera113,468,775 - 13,468,964UniSTS
RH 3.4 Map1150.01UniSTS
Cytogenetic Map1p12UniSTS
BF409316  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2115,008,979 - 15,009,183 (+)MAPPERmRatBN7.2
Rnor_6.0115,719,609 - 15,719,812NCBIRnor6.0
Rnor_5.0117,265,345 - 17,265,548UniSTSRnor5.0
RGSC_v3.4115,524,471 - 15,524,674UniSTSRGSC3.4
Celera113,441,628 - 13,441,831UniSTS
Cytogenetic Map1p12UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:37
Count of miRNA genes:34
Interacting mature miRNAs:37
Transcripts:ENSRNOT00000017401
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 14 9 9 33 35 27 7
Low 43 43 32 19 32 8 11 41 14 4 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001198638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BP492816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB767890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK474097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK480167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV119382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017401   ⟹   ENSRNOP00000017401
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,910,551 - 15,037,567 (+)Ensembl
Rnor_6.0 Ensembl115,620,653 - 15,748,196 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079845   ⟹   ENSRNOP00000075655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,988,622 - 15,037,574 (+)Ensembl
Rnor_6.0 Ensembl115,642,153 - 15,748,203 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093834   ⟹   ENSRNOP00000093910
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,931,829 - 15,036,238 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094977   ⟹   ENSRNOP00000093262
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,966,730 - 15,037,574 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000095682   ⟹   ENSRNOP00000080477
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,910,551 - 14,993,083 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096725   ⟹   ENSRNOP00000079962
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,988,622 - 15,037,574 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000098943   ⟹   ENSRNOP00000093069
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,989,812 - 15,036,238 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099073   ⟹   ENSRNOP00000080280
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,988,895 - 15,036,238 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102172   ⟹   ENSRNOP00000082101
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl114,988,622 - 15,011,556 (+)Ensembl
RefSeq Acc Id: NM_001106270   ⟹   NP_001099740
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,829 - 15,037,574 (+)NCBI
Rnor_6.0115,642,153 - 15,748,203 (+)NCBI
Rnor_5.0117,189,224 - 17,293,867 (+)NCBI
RGSC_v3.4115,440,422 - 15,553,260 (+)RGD
Celera113,364,562 - 13,469,230 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001198638   ⟹   NP_001185567
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,910,551 - 15,037,567 (+)NCBI
Rnor_6.0115,620,665 - 15,748,196 (+)NCBI
Rnor_5.0117,189,224 - 17,293,867 (+)NCBI
Celera113,425,597 - 13,469,223 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039105391   ⟹   XP_038961319
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105395   ⟹   XP_038961323
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,928,241 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105399   ⟹   XP_038961327
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105407   ⟹   XP_038961335
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,988,584 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105408   ⟹   XP_038961336
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,910,433 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105409   ⟹   XP_038961337
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,910,434 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105418   ⟹   XP_038961346
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,810 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105427   ⟹   XP_038961355
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105431   ⟹   XP_038961359
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,962,426 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105435   ⟹   XP_038961363
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105439   ⟹   XP_038961367
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105446   ⟹   XP_038961374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
RefSeq Acc Id: XM_039105447   ⟹   XP_038961375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2114,931,812 - 15,037,567 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099740   ⟸   NM_001106270
- Peptide Label: isoform 1
- UniProtKB: A0A0G2KB52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001185567   ⟸   NM_001198638
- Peptide Label: isoform 2
- UniProtKB: F1MA82 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000075655   ⟸   ENSRNOT00000079845
RefSeq Acc Id: ENSRNOP00000017401   ⟸   ENSRNOT00000017401
RefSeq Acc Id: XP_038961336   ⟸   XM_039105408
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038961337   ⟸   XM_039105409
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038961323   ⟸   XM_039105395
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961346   ⟸   XM_039105418
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038961319   ⟸   XM_039105391
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038961327   ⟸   XM_039105399
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038961355   ⟸   XM_039105427
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038961367   ⟸   XM_039105439
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038961363   ⟸   XM_039105435
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038961374   ⟸   XM_039105446
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038961375   ⟸   XM_039105447
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038961359   ⟸   XM_039105431
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038961335   ⟸   XM_039105407
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000082101   ⟸   ENSRNOT00000102172
RefSeq Acc Id: ENSRNOP00000080477   ⟸   ENSRNOT00000095682
RefSeq Acc Id: ENSRNOP00000093262   ⟸   ENSRNOT00000094977
RefSeq Acc Id: ENSRNOP00000080280   ⟸   ENSRNOT00000099073
RefSeq Acc Id: ENSRNOP00000093069   ⟸   ENSRNOT00000098943
RefSeq Acc Id: ENSRNOP00000093910   ⟸   ENSRNOT00000093834
RefSeq Acc Id: ENSRNOP00000079962   ⟸   ENSRNOT00000096725

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KB52-F1-model_v2 AlphaFold A0A0G2KB52 1-751 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689515
Promoter ID:EPDNEW_R39
Type:multiple initiation site
Name:Map7_1
Description:microtubule-associated protein 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0115,620,655 - 15,620,715EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 15700343 15700344 C T snv SHR/NHsd (RGD), SHRSP/Gcrc (RGD), WKY/Gcrc (RGD), BXH2/CubMcwi (2020), HXB4/IpcvMcwi (2020), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), HXB10/IpcvMcwi (2019), HXB2/IpcvMcwi (2019), BXH3/CubMcwi (2020)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 17246210 17246211 C T snv SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), IS-Tlk/Kyo (KyushuU), SHRSP/Gcrc (KNAW), WKY/Gcrc (KNAW), IS/Kyo (KyushuU), SHR/OlaIpcvPrin (KNAW)


Assembly: mRatBN7.2

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
1 14989813 14989814 C T snv BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), HXB10/IpcvMcwi (2019), SHR/OlalpcvMcwi (2019), HXB4/IpcvMcwi (2020), SHRSP/A3NCrl (2019), HXB2/IpcvMcwi (2019)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308866 AgrOrtholog
BioCyc Gene G2FUF-62204 BioCyc
Ensembl Genes ENSRNOG00000012701 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000017401 ENTREZGENE
  ENSRNOP00000017401.6 UniProtKB/TrEMBL
  ENSRNOP00000075655 ENTREZGENE
  ENSRNOP00000075655.2 UniProtKB/TrEMBL
  ENSRNOP00000079962.1 UniProtKB/TrEMBL
  ENSRNOP00000080280.1 UniProtKB/TrEMBL
  ENSRNOP00000080477.1 UniProtKB/TrEMBL
  ENSRNOP00000082101.1 UniProtKB/TrEMBL
  ENSRNOP00000093069 ENTREZGENE
  ENSRNOP00000093069.1 UniProtKB/TrEMBL
  ENSRNOP00000093262 ENTREZGENE
  ENSRNOP00000093262.1 UniProtKB/TrEMBL
  ENSRNOP00000093910 ENTREZGENE
  ENSRNOP00000093910.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017401 ENTREZGENE
  ENSRNOT00000017401.6 UniProtKB/TrEMBL
  ENSRNOT00000079845 ENTREZGENE
  ENSRNOT00000079845.2 UniProtKB/TrEMBL
  ENSRNOT00000093834 ENTREZGENE
  ENSRNOT00000093834.1 UniProtKB/TrEMBL
  ENSRNOT00000094977 ENTREZGENE
  ENSRNOT00000094977.1 UniProtKB/TrEMBL
  ENSRNOT00000095682.1 UniProtKB/TrEMBL
  ENSRNOT00000096725.1 UniProtKB/TrEMBL
  ENSRNOT00000098943 ENTREZGENE
  ENSRNOT00000098943.1 UniProtKB/TrEMBL
  ENSRNOT00000099073.1 UniProtKB/TrEMBL
  ENSRNOT00000102172.1 UniProtKB/TrEMBL
InterPro E-MAP-115 UniProtKB/TrEMBL
  MAP7 UniProtKB/TrEMBL
KEGG Report rno:293016 UniProtKB/TrEMBL
NCBI Gene 293016 ENTREZGENE
PANTHER PTHR15073:SF4 UniProtKB/TrEMBL
Pfam MAP7 UniProtKB/TrEMBL
PhenoGen Map7 PhenoGen
UniProt A0A0G2KB52 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZPN4_RAT UniProtKB/TrEMBL
  A0A8I5ZPP9_RAT UniProtKB/TrEMBL
  A0A8I5ZQ91_RAT UniProtKB/TrEMBL
  A0A8I5ZUI0_RAT UniProtKB/TrEMBL
  A0A8I6AJA9_RAT UniProtKB/TrEMBL
  A0A8I6AJJ5_RAT UniProtKB/TrEMBL
  A0A8I6GKH8_RAT UniProtKB/TrEMBL
  F1MA82 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-08-29 Map7  microtubule-associated protein 7  Mtap7  microtubule-associated protein 7   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mtap7  microtubule-associated protein 7   Mtap7_predicted  microtubule-associated protein 7 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Mtap7_predicted  microtubule-associated protein 7 (predicted)      Symbol and Name status set to approved 70820 APPROVED