Fbxo5 (F-box protein 5) - Rat Genome Database

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Gene: Fbxo5 (F-box protein 5) Rattus norvegicus
Analyze
Symbol: Fbxo5
Name: F-box protein 5
RGD ID: 1309405
Description: Predicted to enable anaphase-promoting complex binding activity; protein kinase binding activity; and ubiquitin ligase inhibitor activity. Predicted to be involved in several processes, including negative regulation of cellular senescence; negative regulation of ubiquitin protein ligase activity; and regulation of cell cycle process. Predicted to act upstream of or within several processes, including female gamete generation; microtubule polymerization; and regulation of meiotic nuclear division. Predicted to be located in cytoplasm; meiotic spindle; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human FBXO5 (F-box protein 5); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: F-box only protein 5; LOC292263
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,196,068 - 42,202,437 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,196,068 - 42,202,437 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,738,271 - 42,744,646 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0148,725,464 - 48,731,839 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0142,813,736 - 42,820,111 (-)NCBIRnor_WKY
Rnor_6.0142,461,277 - 42,467,646 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,461,291 - 42,467,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,791,187 - 43,797,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,492,134 - 36,498,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1136,495,551 - 36,501,323 (-)NCBI
Celera137,863,352 - 37,869,721 (-)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxynon-2-enal  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
captan  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crotonaldehyde  (ISO)
CU-O LINKAGE  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
dibenz[a,h]anthracene  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Echimidine  (ISO)
Enterolactone  (ISO)
folpet  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
gentamycin  (EXP)
geraniol  (ISO)
hydroquinone  (ISO)
Lasiocarpine  (ISO)
leflunomide  (ISO)
lidocaine  (EXP)
lucanthone  (ISO)
methyl methanesulfonate  (ISO)
monocrotaline  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nocodazole  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
riddelliine  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sirolimus  (ISO)
sodium dichromate  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vanadyl sulfate  (ISO)
vincristine  (ISO)
zaragozic acid A  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
meiotic spindle  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,ISO)
spindle  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11988738   PMID:12477932   PMID:15148369   PMID:15469984   PMID:15526037   PMID:16809773   PMID:16921029   PMID:17190794   PMID:17234884   PMID:17485488   PMID:17875940   PMID:23708001  
PMID:23708605   PMID:24615569   PMID:26083744   PMID:29850565   PMID:29875408  


Genomics

Comparative Map Data
Fbxo5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,196,068 - 42,202,437 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,196,068 - 42,202,437 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,738,271 - 42,744,646 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0148,725,464 - 48,731,839 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0142,813,736 - 42,820,111 (-)NCBIRnor_WKY
Rnor_6.0142,461,277 - 42,467,646 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,461,291 - 42,467,586 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,791,187 - 43,797,556 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4136,492,134 - 36,498,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1136,495,551 - 36,501,323 (-)NCBI
Celera137,863,352 - 37,869,721 (-)NCBICelera
Cytogenetic Map1q11NCBI
FBXO5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386152,970,535 - 152,983,579 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl6152,970,519 - 152,983,579 (-)EnsemblGRCh38hg38GRCh38
GRCh376153,291,670 - 153,304,714 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366153,333,351 - 153,345,867 (-)NCBINCBI36Build 36hg18NCBI36
Build 346153,383,773 - 153,396,288NCBI
Celera6154,025,328 - 154,038,410 (-)NCBICelera
Cytogenetic Map6q25.2NCBI
HuRef6150,854,447 - 150,867,531 (-)NCBIHuRef
CHM1_16153,555,576 - 153,568,660 (-)NCBICHM1_1
T2T-CHM13v2.06154,171,829 - 154,184,878 (-)NCBIT2T-CHM13v2.0
Fbxo5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39105,749,155 - 5,755,465 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl105,749,160 - 5,755,600 (-)EnsemblGRCm39 Ensembl
GRCm38105,799,158 - 5,805,465 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl105,799,160 - 5,805,600 (-)EnsemblGRCm38mm10GRCm38
MGSCv37104,541,076 - 4,547,383 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36104,541,076 - 4,546,998 (+)NCBIMGSCv36mm8
Celera105,733,112 - 5,739,409 (-)NCBICelera
Cytogenetic Map10A1NCBI
Fbxo5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554398,830,975 - 8,843,828 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554398,830,658 - 8,843,653 (+)NCBIChiLan1.0ChiLan1.0
FBXO5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16155,481,767 - 155,494,689 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6155,481,753 - 155,494,231 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06150,793,020 - 150,806,008 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FBXO5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1143,138,338 - 43,149,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl143,138,889 - 43,149,297 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha143,975,851 - 43,987,186 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0143,321,686 - 43,333,047 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl143,322,263 - 43,332,336 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1143,189,124 - 43,200,485 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0143,052,605 - 43,063,915 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0143,540,287 - 43,551,650 (-)NCBIUU_Cfam_GSD_1.0
Fbxo5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946138,337,977 - 138,349,305 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364895,589,538 - 5,600,539 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049364895,589,621 - 5,602,221 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl113,467,501 - 13,505,928 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1113,466,961 - 13,478,496 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2115,716,714 - 15,728,617 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11380,453,345 - 80,467,590 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1380,453,355 - 80,466,778 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604052,778,853 - 52,792,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247855,247,731 - 5,260,736 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247855,248,434 - 5,260,623 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fbxo5
15 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:339
Count of miRNA genes:191
Interacting mature miRNAs:219
Transcripts:ENSRNOT00000029416
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)cortical volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)11543162149361612Rat
5684999Bss102Bone structure and strength QTL 1025.50.00000072tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)11543162149361612Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11620621049268520Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)11933357156983283Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)12076315844095856Rat
724520Bp145Blood pressure QTL 1452.10.0024arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12078482865784828Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1357400Bw62Body weight QTL624.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)12234064767340647Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat

Markers in Region
RH127160  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,196,595 - 42,196,840 (+)MAPPERmRatBN7.2
Rnor_6.0142,461,805 - 42,462,049NCBIRnor6.0
Rnor_5.0143,791,715 - 43,791,959UniSTSRnor5.0
RGSC_v3.4136,492,662 - 36,492,906UniSTSRGSC3.4
Celera137,863,880 - 37,864,124UniSTS
Cytogenetic Map1p11UniSTS
RH143642  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,199,124 - 42,199,224 (+)MAPPERmRatBN7.2
Rnor_6.0142,464,334 - 42,464,433NCBIRnor6.0
Rnor_5.0143,794,244 - 43,794,343UniSTSRnor5.0
RGSC_v3.4136,495,191 - 36,495,290UniSTSRGSC3.4
Celera137,866,409 - 37,866,508UniSTS
RH 3.4 Map1441.0UniSTS
Cytogenetic Map1p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 26 29 22 16 22 37 20 30
Low 1 16 28 19 3 19 6 6 37 15 9 11 6
Below cutoff 1 2 5 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029416   ⟹   ENSRNOP00000034853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,196,068 - 42,202,437 (-)Ensembl
Rnor_6.0 Ensembl142,461,291 - 42,467,586 (-)Ensembl
RefSeq Acc Id: NM_001106206   ⟹   NP_001099676
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,196,068 - 42,202,437 (-)NCBI
Rnor_6.0142,461,277 - 42,467,646 (-)NCBI
Rnor_5.0143,791,187 - 43,797,556 (-)NCBI
RGSC_v3.4136,492,134 - 36,498,503 (-)RGD
Celera137,863,352 - 37,869,721 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001099676 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI58746 (Get FASTA)   NCBI Sequence Viewer  
  EDL92840 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099676   ⟸   NM_001106206
- UniProtKB: B0BNA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000034853   ⟸   ENSRNOT00000029416
Protein Domains
ZBR-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B0BNA4-F1-model_v2 AlphaFold B0BNA4 1-418 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689591
Promoter ID:EPDNEW_R116
Type:multiple initiation site
Name:Fbxo5_1
Description:F-box protein 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0142,467,600 - 42,467,660EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309405 AgrOrtholog
BioCyc Gene G2FUF-61699 BioCyc
Ensembl Genes ENSRNOG00000024077 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000034853 ENTREZGENE
  ENSRNOP00000034853.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029416 ENTREZGENE
  ENSRNOT00000029416.7 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9100726 IMAGE-MGC_LOAD
InterPro F-box_dom_cyclin-like UniProtKB/TrEMBL
  F-box_dom_like UniProtKB/TrEMBL
  ZF_ZBR UniProtKB/TrEMBL
KEGG Report rno:292263 UniProtKB/TrEMBL
MGC_CLONE MGC:187924 IMAGE-MGC_LOAD
NCBI Gene 292263 ENTREZGENE
Pfam F-box UniProtKB/TrEMBL
PhenoGen Fbxo5 PhenoGen
PROSITE ZF_ZBR UniProtKB/TrEMBL
Superfamily-SCOP SSF81383 UniProtKB/TrEMBL
UniProt B0BNA4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Fbxo5  F-box protein 5  Fbxo5_predicted  F-box only protein 5 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Fbxo5_predicted  F-box only protein 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED