LOC102550206 (uncharacterized LOC102550206) - Rat Genome Database

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Gene: LOC102550206 (uncharacterized LOC102550206) Rattus norvegicus
Analyze
Symbol: LOC102550206
Name: uncharacterized LOC102550206
RGD ID: 7505831
Description:
Type: ncrna (Ensembl: lincRNA)
RefSeq Status: MODEL
Previously known as: LOC108349498; uncharacterized LOC108349498
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8115,616,599 - 15,658,121 (+)NCBIGRCr8
mRatBN7.2113,796,898 - 13,838,511 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0114,507,984 - 14,512,889 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl114,507,956 - 14,512,887 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0116,058,399 - 16,063,271 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera112,246,671 - 12,251,570 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102550206
287 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1592587724697545Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)1985600154856001Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11099206555992065Rat
1300167Hrtrt2Heart rate QTL 24.35heart pumping trait (VT:2000009)heart rate (CMO:0000002)11148131275088344Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)11148148232355910Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)11183518156835181Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 7
Low 1 1 1
Below cutoff 2 6 1 9 1 3 3 1 6 1 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000088269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl114,507,956 - 14,512,887 (+)Ensembl
RefSeq Acc Id: XR_005497284
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8115,616,604 - 15,621,535 (+)NCBI
mRatBN7.2113,796,898 - 13,801,835 (+)NCBI
RefSeq Acc Id: XR_005497286
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8115,616,606 - 15,621,535 (+)NCBI
mRatBN7.2113,796,904 - 13,801,835 (+)NCBI
RefSeq Acc Id: XR_005497287
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8115,616,611 - 15,658,121 (+)NCBI
mRatBN7.2113,796,907 - 13,838,500 (+)NCBI
RefSeq Acc Id: XR_005497288
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8115,616,611 - 15,658,121 (+)NCBI
mRatBN7.2113,796,907 - 13,838,511 (+)NCBI
RefSeq Acc Id: XR_349850
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8115,616,610 - 15,621,535 (+)NCBI
mRatBN7.2113,796,907 - 13,801,835 (+)NCBI
Rnor_6.0114,507,984 - 14,512,889 (+)NCBI
Rnor_5.0116,058,399 - 16,063,271 (+)NCBI
Sequence:
RefSeq Acc Id: XR_589862
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8115,616,599 - 15,621,535 (+)NCBI
mRatBN7.2113,796,907 - 13,801,835 (+)NCBI
Rnor_6.0114,507,984 - 14,512,889 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62240 BioCyc
Ensembl Genes ENSRNOG00000058088 Ensembl
NCBI Gene LOC102550206 ENTREZGENE
PhenoGen LOC102550206 PhenoGen
RatGTEx ENSRNOG00000058088 RatGTEx
RNAcentral URS0000CCEA2C RNACentral
  URS0000CCF185 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102550206  uncharacterized LOC102550206  LOC108349498  uncharacterized LOC108349498  Data merged from RGD:11447217 737654 PROVISIONAL
2016-08-02 LOC108349498  uncharacterized LOC108349498      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-17 LOC102550206  uncharacterized LOC102550206      Symbol and Name status set to provisional 70820 PROVISIONAL