Selenow (selenoprotein W) - Rat Genome Database

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Gene: Selenow (selenoprotein W) Rattus norvegicus
Analyze
Symbol: Selenow
Name: selenoprotein W
RGD ID: 3661
Description: Predicted to enable antioxidant activity. Involved in response to selenium ion. Predicted to be located in cytoplasm. Orthologous to human SELENOW (selenoprotein W); INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: REVIEWED
Previously known as: LOC103689961; MGC105482; Selenoprotein W muscle 1; selenoprotein W, 1; selenoprotein W, muscle 1; selenoprotein W-like; SelW; Sepw1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Selenow-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Note: GeneIDs 103689961 and 25545 are annotated independently on Rnor_6.0 but may be redundant loci. [04 May 2017]
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,727,631 - 85,732,703 (-)NCBIGRCr8
mRatBN7.2176,599,441 - 76,604,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx181,974,548 - 81,979,557 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,538,613 - 90,543,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,729,686 - 83,734,695 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,530,692 - 77,535,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,799,172 - 78,804,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,249,869 - 76,254,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,327,980 - 76,333,020 (-)NCBI
Celera171,089,734 - 71,094,810 (-)NCBICelera
Cytogenetic Map1q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrotoluene  (EXP)
2-nitrofluorene  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (EXP)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
dexamethasone  (ISO)
diethylstilbestrol  (EXP)
disodium selenite  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (EXP,ISO)
ethanol  (ISO)
fenthion  (ISO)
flavonoids  (EXP)
glutathione  (ISO)
hydralazine  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
lead(0)  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methylmercury chloride  (ISO)
motexafin gadolinium  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodimethylamine  (EXP)
nickel dichloride  (EXP)
nitrofen  (EXP)
oxaliplatin  (EXP)
p-chloromercuribenzoic acid  (ISO)
pentachlorophenol  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
piperonyl butoxide  (EXP)
pirinixic acid  (EXP)
piroxicam  (ISO)
poly(vinylpyrrolidone)  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
propanal  (ISO)
pyrogallol  (ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
Se-methyl-L-selenocysteine  (ISO)
Se-methylselenocysteine  (ISO)
selenium atom  (EXP,ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
topotecan  (EXP)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (EXP)
vitamin E  (ISO)
vorinostat  (ISO)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Selenium requirements are higher for glutathione peroxidase-1 mRNA than gpx1 activity in rat testis. Schriever SC, etal., Exp Biol Med (Maywood). 2009 May;234(5):513-21. Epub 2009 Feb 20.
7. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
8. Rat skeletal muscle selenoprotein W: cDNA clone and mRNA modulation by dietary selenium. Vendeland SC, etal., Proc Natl Acad Sci U S A 1995 Sep 12;92(19):8749-53.
Additional References at PubMed
PMID:7896009   PMID:8349599   PMID:8889548   PMID:9256076   PMID:12477932   PMID:15055543   PMID:15337603   PMID:15489334   PMID:20956524   PMID:22479358   PMID:27645994  


Genomics

Comparative Map Data
Selenow
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8185,727,631 - 85,732,703 (-)NCBIGRCr8
mRatBN7.2176,599,441 - 76,604,514 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx181,974,548 - 81,979,557 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0190,538,613 - 90,543,622 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0183,729,686 - 83,734,695 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0177,530,692 - 77,535,765 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0178,799,172 - 78,804,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4176,249,869 - 76,254,942 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1176,327,980 - 76,333,020 (-)NCBI
Celera171,089,734 - 71,094,810 (-)NCBICelera
Cytogenetic Map1q21NCBI
SELENOW
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381947,778,703 - 47,784,682 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1947,778,677 - 47,784,686 (+)EnsemblGRCh38hg38GRCh38
GRCh371948,281,960 - 48,287,939 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361952,973,654 - 52,979,755 (+)NCBINCBI36Build 36hg18NCBI36
Build 341952,973,653 - 52,979,751NCBI
Celera1945,087,540 - 45,093,641 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1944,708,351 - 44,714,452 (+)NCBIHuRef
CHM1_11948,284,165 - 48,290,265 (+)NCBICHM1_1
T2T-CHM13v2.01950,609,522 - 50,615,500 (+)NCBIT2T-CHM13v2.0
Selenow
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39715,651,133 - 15,656,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl715,651,133 - 15,656,327 (-)EnsemblGRCm39 Ensembl
GRCm38715,917,208 - 15,922,371 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl715,917,208 - 15,922,402 (-)EnsemblGRCm38mm10GRCm38
MGSCv37716,502,557 - 16,507,720 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36715,075,730 - 15,080,848 (-)NCBIMGSCv36mm8
Celera713,115,873 - 13,121,036 (-)NCBICelera
Cytogenetic Map7A2NCBI
cM Map78.62NCBI
Selenow
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555741,522,304 - 1,526,862 (+)NCBIChiLan1.0ChiLan1.0
LOC106634549
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21195,738,266 - 195,739,874 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11194,857,104 - 194,858,696 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0130,374,648 - 30,375,515 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1131,397,890 - 31,412,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1953,425,939 - 53,428,515 (+)Ensemblpanpan1.1panPan2
SELENOW
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11108,285,443 - 108,289,551 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1108,285,443 - 108,289,568 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1107,768,244 - 107,772,352 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01108,811,307 - 108,815,497 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11108,479,650 - 108,483,762 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01108,124,201 - 108,128,312 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01108,991,920 - 108,996,033 (-)NCBIUU_Cfam_GSD_1.0
Selenow
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934919,740,658 - 19,751,877 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366641,358,753 - 1,361,112 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELENOW
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl653,470,787 - 53,474,652 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1653,470,563 - 53,474,662 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2649,000,933 - 49,004,982 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELENOW
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120101,740,545 - 101,741,532 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603314,919,248 - 14,919,909 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selenow
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248326,129,073 - 6,132,619 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Selenow
41 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:87
Interacting mature miRNAs:91
Transcripts:ENSRNOT00000018559
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)11148131282174945Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)11148131282174945Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)11148131282174945Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)11148131282174945Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)122340647102268831Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)12887978078430678Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13273727390665040Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)13344984878449848Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)13483685879836858Rat
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313051Bss57Bone structure and strength QTL 573.70.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)143284731118944897Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313072Bss53Bone structure and strength QTL 534.30.0001tibia length (VT:0004357)tibia length (CMO:0000450)143284731118944897Rat
2313078Bss54Bone structure and strength QTL 543.50.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
2313094Bss58Bone structure and strength QTL 583.70.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143284731118944897Rat
2313098Bmd70Bone mineral density QTL 703.60.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)143284731118944897Rat
2313099Bss56Bone structure and strength QTL 562.40.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143284731118944897Rat
2302059Pia36Pristane induced arthritis QTL 363.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)14333300288333002Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14580314078430678Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)148963584144267916Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14936146582174945Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)14939317294393172Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)15386304190532583Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)15389511782174945Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15389511782174945Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)15673266898773277Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)156949932101949932Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)157336763151090257Rat
1300121Hrtrt1Heart rate QTL 13.7heart pumping trait (VT:2000009)heart rate (CMO:0000002)165789093115540829Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)166023617118608521Rat
631512Scl6Serum cholesterol level QTL 69.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)17219768090508767Rat

Markers in Region
RH133310  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2176,599,535 - 76,599,735 (+)MAPPERmRatBN7.2
Rnor_6.0177,803,569 - 77,803,768NCBIRnor6.0
Rnor_6.0177,530,787 - 77,530,986NCBIRnor6.0
Rnor_5.0179,068,127 - 79,068,326UniSTSRnor5.0
Rnor_5.0178,799,267 - 78,799,466UniSTSRnor5.0
RGSC_v3.4176,249,964 - 76,250,163UniSTSRGSC3.4
Celera171,089,829 - 71,090,028UniSTS
RH 3.4 Map1777.5UniSTS
Cytogenetic Map1q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 33 23 14 23 8 11 74 29 41 11 8
Low 24 18 5 18 6 2
Below cutoff 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC087625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI279050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI281207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN931873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U25264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000018559   ⟹   ENSRNOP00000018559
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl177,533,148 - 77,535,681 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000078917   ⟹   ENSRNOP00000069820
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl177,805,929 - 77,808,462 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080422   ⟹   ENSRNOP00000070487
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,599,464 - 76,604,500 (+)Ensembl
Rnor_6.0 Ensembl177,803,475 - 77,808,513 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101950
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,779 - 76,604,724 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,986 - 76,604,722 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,779 - 76,604,511 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,986 - 76,604,722 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110531
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,598,779 - 76,604,511 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112681
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl176,599,235 - 76,604,511 (-)Ensembl
RefSeq Acc Id: NM_013027   ⟹   NP_037159
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8185,727,631 - 85,732,703 (-)NCBI
mRatBN7.2176,599,441 - 76,604,514 (-)NCBI
Rnor_6.0177,530,692 - 77,535,765 (-)NCBI
Rnor_5.0178,799,172 - 78,804,245 (-)NCBI
RGSC_v3.4176,249,869 - 76,254,942 (-)RGD
Celera171,089,734 - 71,094,810 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_037159 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52255 (Get FASTA)   NCBI Sequence Viewer  
  AAH87625 (Get FASTA)   NCBI Sequence Viewer  
  EDM08350 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00055022934
  ENSRNOP00060040017
  ENSRNOP00065047556
GenBank Protein P63301 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_037159   ⟸   NM_013027
- UniProtKB: P63301 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070487   ⟸   ENSRNOT00000080422
RefSeq Acc Id: ENSRNOP00000018559   ⟸   ENSRNOT00000018559
RefSeq Acc Id: ENSRNOP00000069820   ⟸   ENSRNOT00000078917

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689720
Promoter ID:EPDNEW_R243
Type:multiple initiation site
Name:Selenow_1
Description:selenoprotein W
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0177,535,751 - 77,535,811EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3661 AgrOrtholog
BioCyc Gene G2FUF-60636 BioCyc
Ensembl Genes ENSRNOG00000013548 Ensembl
  ENSRNOG00000051483 Ensembl
  ENSRNOG00000067799 Ensembl, ENTREZGENE
  ENSRNOG00055016779 UniProtKB/Swiss-Prot
  ENSRNOG00060027690 UniProtKB/Swiss-Prot
  ENSRNOG00065033624 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000112681 ENTREZGENE
  ENSRNOT00055028495 UniProtKB/Swiss-Prot
  ENSRNOT00060048087 UniProtKB/Swiss-Prot
  ENSRNOT00065057770 UniProtKB/Swiss-Prot
Gene3D-CATH Glutaredoxin UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7316562 IMAGE-MGC_LOAD
InterPro Selenoprotein_Rdx-typ UniProtKB/Swiss-Prot
  Thioredoxin-like_sf UniProtKB/Swiss-Prot
KEGG Report rno:25545 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105482 IMAGE-MGC_LOAD
NCBI Gene 25545 ENTREZGENE
PANTHER SELENOPROTEIN W UniProtKB/Swiss-Prot
  SELENOPROTEIN W UniProtKB/Swiss-Prot
Pfam Rdx UniProtKB/Swiss-Prot
PhenoGen Selenow PhenoGen
RatGTEx ENSRNOG00000013548 RatGTEx
  ENSRNOG00000051483 RatGTEx
  ENSRNOG00000067799 RatGTEx
  ENSRNOG00055016779 RatGTEx
  ENSRNOG00060027690 RatGTEx
  ENSRNOG00065033624 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/Swiss-Prot
TIGR TC228682
UniProt P63301 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35965 UniProtKB/Swiss-Prot
  P49904 UniProtKB/Swiss-Prot
  Q9JIC2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Selenow  selenoprotein W  LOC103689961  selenoprotein W-like  Data merged from RGD:9418506 737654 PROVISIONAL
2016-09-28 Selenow  selenoprotein W  Sepw1  selenoprotein W, 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-25 LOC103689961  selenoprotein W-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-11-20 Sepw1  selenoprotein W, 1  Sepw1  selenoprotein W, muscle 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Sepw1  Selenoprotein W muscle 1      Symbol and Name status set to approved 70586 APPROVED