Zfp579 (zinc finger protein 579) - Rat Genome Database

Name: Zfp579
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Zfp579 (zinc finger protein 579) Rattus norvegicus

Analyze

Symbol:

Zfp579

Name:

zinc finger protein 579

RGD ID:

1308475

Description:

Orthologous to human ZNF579 (zinc finger protein 579); INTERACTS WITH amphetamine; bisphenol A; 2,3,7,8-tetrachlorodibenzodioxine (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC308339; Znf579

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ZNF579 (zinc finger protein 579)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	Zfp579 (zinc finger protein 579)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Znf579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ZNF579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ZNF579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Znf579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ZNF579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	ZNF579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Znf579 (zinc finger protein 579)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	ZNF579 (zinc finger protein 579)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Zfp579 (zinc finger protein 579)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	68,847,547 - 68,850,751 (+)	NCBI
Rnor_6.0 Ensembl	1	72,399,157 - 72,402,327 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	72,397,887 - 72,402,329 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	76,133,748 - 76,136,944 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	67,586,226 - 67,589,398 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	67,664,393 - 67,667,506 (+)	NCBI
Celera	1	68,268,481 - 68,271,653 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (ISO)

aflatoxin B1 (ISO)

amphetamine (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

butanal (ISO)

carbon nanotube (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

folic acid (ISO)

SB 431542 (ISO)

triclosan (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

References

References - curated


1.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:22681889

Genomics

Comparative Map Data

Zfp579
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	1	68,847,547 - 68,850,751 (+)	NCBI
Rnor_6.0 Ensembl	1	72,399,157 - 72,402,327 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	1	72,397,887 - 72,402,329 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	1	76,133,748 - 76,136,944 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	67,586,226 - 67,589,398 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	1	67,664,393 - 67,667,506 (+)	NCBI
Celera	1	68,268,481 - 68,271,653 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

ZNF579
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	19	55,576,774 - 55,580,848 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	19	55,576,774 - 55,580,848 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	19	56,088,140 - 56,092,214 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	60,780,703 - 60,784,023 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	19	60,780,710 - 60,783,999	NCBI
Celera	19	53,130,028 - 53,133,351 (-)	NCBI
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	52,399,884 - 52,403,207 (-)	NCBI		HuRef
CHM1_1	19	56,082,565 - 56,085,885 (-)	NCBI		CHM1_1

Zfp579
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	4,995,851 - 4,999,100 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	7	4,986,482 - 4,999,157 (-)	Ensembl
GRCm38	7	4,992,852 - 4,996,101 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	4,983,483 - 4,996,158 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	4,944,454 - 4,947,703 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	7	4,595,939 - 4,598,427 (-)	NCBI			mm8
Celera	7	4,734,953 - 4,738,202 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI

Znf579
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955567	761,535 - 762,351 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZNF579
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Mhudiblu_PPA_v0	19	52,624,374 - 52,628,197 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

ZNF579
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	1	102,142,455 - 102,152,936 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	1	102,149,647 - 102,152,926 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Znf579
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936981	109,764 - 113,085 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF579
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	59,701,608 - 59,706,760 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	59,703,269 - 59,706,444 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	54,490,813 - 54,494,022 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF579
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	48,164,925 - 48,168,822 (-)	NCBI
ChlSab1.1 Ensembl	6	48,165,819 - 48,167,513 (-)	Ensembl

Znf579
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624832	1,819,302 - 1,823,105 (+)	NCBI

Position Markers

RH131533

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	1	72,401,999 - 72,402,180	NCBI	Rnor6.0
Rnor_5.0	1	76,133,897 - 76,134,078	UniSTS	Rnor5.0
RGSC_v3.4	1	67,589,068 - 67,589,249	UniSTS	RGSC3.4
Celera	1	68,268,630 - 68,268,811	UniSTS
Cytogenetic Map	1	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	254393	86904217	Rat
631688	Hcas2	Hepatocarcinoma susceptibility QTL 2	3	0.0001	liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	1	5655769	122614963	Rat
4889451	Eae29	Experimental allergic encephalomyelitis QTL 29	5.51		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	1	5655772	85706974	Rat
1300167	Hrtrt2	Heart rate QTL 2	4.35		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	11314489	75844121	Rat
2313062	Bmd73	Bone mineral density QTL 73	3.9	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	11314489	83657083	Rat
2313065	Bss67	Bone structure and strength QTL 67	3.1	0.0001	tibia area (VT:1000281)	tibia total energy absorbed before break (CMO:0001736)	1	11314489	83657083	Rat
2313069	Bss68	Bone structure and strength QTL 68	2.9	0.0001	tibia size trait (VT:0100001)	tibia total energy absorbed before break (CMO:0001736)	1	11314489	83657083	Rat
2313075	Bss66	Bone structure and strength QTL 66	3.4	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	11314489	83657083	Rat
2313077	Bss69	Bone structure and strength QTL 69	3.5	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	11314489	83657083	Rat
2313092	Bmd72	Bone mineral density QTL 72	2.5	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	11314489	83657083	Rat
2313097	Bss70	Bone structure and strength QTL 70	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	11314489	83657083	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	23406428	108057505	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	24297799	78748000	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	25951907	130917265	Rat
1331785	Rf27	Renal function QTL 27	4.643		urine sodium amount (VT:0006274)	urine sodium level (CMO:0000129)	1	31489454	79689689	Rat
1354643	Foco2	Food consumption QTL 2	7.17	0.0001	eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	1	34449112	79449112	Rat
1354599	Bw29	Body weight QTL 29	3.46	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	1	34449112	79449112	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34993530	173445086	Rat
1300172	Bp172	Blood pressure QTL 172	3.56		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	35377508	94364229	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	35377692	217372257	Rat
9589820	Insglur3	Insulin/glucose ratio QTL 3	10.75	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	1	35854167	80854167	Rat
8552900	Pigfal1	Plasma insulin-like growth factor 1 level QTL 1	7.4		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	35854167	80854167	Rat
8552948	Pigfal11	Plasma insulin-like growth factor 1 level QTL 11	4.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	1	35854167	80854167	Rat
1331732	Srn4	Serum renin concentration QTL 4	4.467		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	1	36033165	79689689	Rat
1331792	Rf29	Renal function QTL 29	4.589		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	1	36033165	79689689	Rat
2302059	Pia36	Pristane induced arthritis QTL 36	3.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	1	41907249	86907249	Rat
2313051	Bss57	Bone structure and strength QTL 57	3.7	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	1	43579208	126240667	Rat
2313059	Bss55	Bone structure and strength QTL 55	3.2	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313072	Bss53	Bone structure and strength QTL 53	4.3	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	43579208	126240667	Rat
2313078	Bss54	Bone structure and strength QTL 54	3.5	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	1	43579208	126240667	Rat
2313094	Bss58	Bone structure and strength QTL 58	3.7	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	1	43579208	126240667	Rat
2313098	Bmd70	Bone mineral density QTL 70	3.6	0.0001	tibia mineral mass (VT:1000283)	cortical volumetric bone mineral density (CMO:0001730)	1	43579208	126240667	Rat
2313099	Bss56	Bone structure and strength QTL 56	2.4	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	1	43579208	126240667	Rat
1331778	Rf28	Renal function QTL 28	4.66		urine potassium amount (VT:0010539)	urine potassium excretion rate (CMO:0000761)	1	46113461	79689689	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	49147799	156446783	Rat
4889962	Bss94	Bone structure and strength QTL 94	3.8		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	49547328	83657083	Rat
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	49578577	94578577	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	49578577	169852184	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	49578693	217054291	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	50522714	94225616	Rat
4889919	Bss86	Bone structure and strength QTL 86	4.1		tibia area (VT:1000281)	tibia midshaft total cross-sectional area (CMO:0001715)	1	53851348	83657083	Rat
4889929	Bss87	Bone structure and strength QTL 87	6.7		tibia area (VT:1000281)	tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)	1	53851348	83657083	Rat
61342	Bp27	Blood pressure QTL 27	3.4	0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	57761301	104391981	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	58209327	103209327	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	58354072	161711996	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	64588516	125875986	Rat
1300121	Hrtrt1	Heart rate QTL 1	3.7		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	66113339	122614963	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	67227683	94201552	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	60
Count of miRNA genes:	49
Interacting mature miRNAs:	54
Transcripts:	ENSRNOT00000022349
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		28	2	2	2	2			61	20	28	3
Low	3	15	46	30	17	30	6	9	13	15	11	8	6
Below cutoff			6	6		6	2	2			2		2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001126276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006228256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC161912	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000022349 ⟹ ENSRNOP00000022349

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	1	72,399,157 - 72,402,327 (+)	Ensembl

RefSeq Acc Id:

NM_001126276 ⟹ NP_001119748

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	68,847,579 - 68,850,751 (+)	NCBI
Rnor_6.0	1	72,399,157 - 72,402,329 (+)	NCBI
Rnor_5.0	1	76,133,748 - 76,136,944 (-)	NCBI
RGSC_v3.4	1	67,586,226 - 67,589,398 (+)	RGD
Celera	1	68,268,481 - 68,271,653 (-)	RGD

Sequence:

show sequence

CCACGCTCAACCTCCTCCCTCCCTGCCACCACTGTCCGCGATCGCCCGGCAGCAGGGAAGGAAG
AAAGGAGCGCAGGAGGCGGAGGCATGGATCCACAGCCCCCTCCACCTGCCCAGGGCAGCCCACC
TCACCGTGACCGTGGCCGAGGCCGAGGCCGTGGCCGTGGCCGTGGCCGAGGCCGTGGTCGTGGC
AGAGGGGGTGCAGGAGCCCCTAGGGCACCTCTGCCCTGCCCCACCTGTGGTCGCCTCTTCCGCT
TCCCTTACTACCTGTCTCGACACCGGCTGAGCCACTCGGGCCTCCGGCCCCATGCCTGCCCCCT
ATGCCCCAAAGCTTTCCGCAGGCCTGCCCACCTTTCCCGCCACCTTCGTGGCCACGGGCCTCAG
CCTCCTCTGCGCTGCGCTGCCTGCCCACGCACCTTCCCGGAGCCGGCCCAGCTCAGGCGCCACC
TGGCCCAGGAGCACGCAGGTGGCGAGATGGACCTGACAACGCAGAGGGCAGTGAAGGAGGAGCC
CGAGGCCAGTTGGGGTCCGCAGGACGAAGGCGTGGAGCAGCCCTCCACGGTAGTGGTGGCCGGG
GTTGCAGAGGAAGCGACCGCACAGTGGCCCGCGGGGGACCCGGCTTCCGTGGCTGCCCCCACGA
GTACCGATCCTCGGGAATCGGAAGCTGAGGAGGCCGAGGCTGGGGCTGCGGAGCTAAGGGCAGA
GTTGGCACTGGCTGCGGGGCGACAGGAGGAGAAACAGGTCCTCCTCCAGGCCGACTGGACGCTG
CTGTGTCTCCGCTGTCGCGAAGCCTTCGCCACCAAGGGGGAGCTCAAAGCCCACCCGTGTCTGC
GCCCTGAGGGCGAACAGGAAGGCGAAGGAGGACCCCCGCCCCGCCCCAAGCGACACCAGTGTTC
CATCTGCCTCAAGGCTTTCGCCAGGCCCTGGTCTCTGTCGCGTCACCGGCTAGTCCACTCCACC
GATCGGCCTTTTGTGTGTCCAGACTGCGGCCTGGCCTTCCGCCTGGCCTCCTACCTCCGCCAGC
ACCGCCGTGTCCATGGCCCTCTCAGCCTGCTGGCCCCACTACCCGGGGCCAGCAAGAAGGACGA
CAAGGCCTCAGGTGGACGGAACTCAGGGAAAGGGCCTGAGGGGGTTGAAGGGGCAGAATGTGGA
GGTGCATCAGAAGGGGGCGAAGGCGGGCAGAATGGTGGAGACGCCACCCCAGCCCGGCCTCCGG
CGGGGGAGCCACGTTTCTGGTGTCCTGAGTGTGGCAAAGGTTTCCGACGCCGGGCACACCTACG
CCAGCACGGGGTCACCCACTCTGGGGCACGCCCTTTCCAGTGCGTGCGTTGCCAGAGGGAGTTC
AAGCGACTGGCAGACCTGGCCCGTCACGCTCAAGTCCATGCCGGGGGTCCCGCCCCGCATCCGT
GCCCGCGATGCCCACGCCGTTTCTCCCGCGCCTACAGCCTCCTACGCCACCAACGCTGCCACCG
CGCAGAGCTGGAACGGGCAGAGCTGGAGAGGGCTGCAGCGCTGCAGGCACTCCAGACCCAGGCC
ATACAGTCGTCTCAGCCTCCACAGCCGTTTAAGCAGGAGGCAGAAGGGCTCCCTCTGCCCATCT
CCCACATCAAGGAAGAGCCTCCCTCACCTGGCACTCCACCTCAGTCCCCGCCGGCTCCTCCCGT
CTTTCTCAGCGCCTCCTGTTTTGACAGCCAAGACCATTCAGCCTTTGAGATGGAGGATGAGGAG
GTGGACAGCAAGGCCCACCTATGTGGATTGGGAGACCTGGCCTCCTGACCCACACATCCACCTT
CCACCCTCCGAATTGAGCTCCCGGTTTGCAGTAAGGAAGAGGGAAACTGAAGGAGAGGAGCTTC
CTCTGCCTCCCCTGAGCCCTGGGTCATTCACCTTCTCCTTTACCCACCCCTAGACCCCTGATGC
TGGTTAGGAACCTCTCACCCCAACACATGTCTTAAGTAAGGCAGGACAAGGCAGAGGACATTTG
GCCAGAAGGATAAAGACTGCTGGGTTTGTCCCAGCCTGCCCATCCCTATTATACACACTGGACA
CCATCACCTCTTTGGAACTGCCAGACCCTGGGGTTTCCCAGTGCAAAAGGTCTGCCCCTGTTGC
TCTGTCTCTGTGAATAAATGTGAGTTCGTGCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006228256 ⟹ XP_006228318

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	1	68,847,547 - 68,850,751 (+)	NCBI
Rnor_6.0	1	72,397,887 - 72,402,329 (+)	NCBI
Rnor_5.0	1	76,133,748 - 76,136,944 (-)	NCBI

Sequence:

show sequence

TGTGTGCAGACACATAGGTGTGGAAGTCAGAGGCCCACCCACAAGAACTGATTTGGTTATCTCT
TTCTACTCTGTGGGTCCTGGGTAGCTTACTCAGGTCATCAGCTATGAACCAGGTGCCTTTGCTC
TGAGCCAATCTTGCCTGCCCAAAATAGCTACATTGAAATTTTTTAAAAAGGAAAAGAAAGCTGC
AGCAAAGAACCTGGCACAAGTATAATATTGCATGTTTCTGGTTTCTTGAGGGTGAACTCCTGGA
ATTGCTAGCATGTTAAAGCTTTCCAAAACTCTACTCAACGCAGACATGTACAAAAGGAACTATT
TACCCAGCCTCTTGCCAACAATGTTTGCATGAAGTTAACCCTAAAGAAAAACAACAGTCCAATA
CAGGCAGAGTCCTGCAACGGACCTTTATCTCCATCACATACACTTTGAGATGTGGCCAGGTTGA
TCCCATCCAGCAGACTGAAACATTAAAGCTCCAGGTTCCATAAAACGTGGTTGCCGAGGAAGAC
TAGAGGAATGGCGTTCACTCCCCTTGAAAGGCAGCTCACTATCCCTGCATTCCCACAGTACTTT
GCCCAAAACAGAGCTTTCTTCGCCACACCATTGGTGACTGACTCTTGTCCGTCTCTTTTTATCA
TACTATGAATGTTGCCTTTATCGATCCAGCACCAAGGACAGAGCCAGACCACAGTAGGTGCTCT
GATAAAAGTGGTCGAGTTGTGATCCTGGGGCTTACCATAAAGGGGGAAACTGAGGCTCGGAGAA
GAGAGAATTGCTTGCCCAGGCAACCAAGGGACGGTGGGAGTCAAGCTCTATCATAGAGGGTGGT
CACACTTTCAAGCCTGTATCACTTACTGCTTCGTTCATCTCCATCTTTGCCTTCTTGACCCAGC
AGCCCAGCACAGTGCCTGGCACCGGCAGGACTTGATAAATGCCTGTTTGTTGAAAGAATGAATG
AATATGTGTTATCTGTTGGGAAATGGAGGAGGGGTGGCAAGCTGGATCCAAAGTCCCAGGCTTG
TAGCCCCCTCCTTCTCTGAGGGTCCAAAAGACAAGCCTTCAGTCCTTTCCCTTCCCGAGATCCA
GGAGCCGCACCGCCCTCCTCTGCCCCCCAAGGTCCCTGGCCCTCCGCTTCCGGCTTCTCAGCCA
GTCTTTCCTCTTCTAGCCTCCGACCAAGCGCCGTGTTTCCGGGGGGAAGACTTAGGCTGTAACA
CCGAGCCCAGCCTCCTTCTCCACCCCTACCCACCCCACCCCCCCCCCATCACCACCACGCTCAA
CCTCCTCCCTCCCTGCCACCACTGTCCGCGATCGCCCGGCAGCAGGGAAGGAAGAAAGGAGCGC
AGGAGGCGGAGAGCCTCTTGACTTTGAATCCCACCCTACTTGGGCCTCAAGGGTGGACTGGTTC
CCAGCCCCTCCAAGAATGTTCAAACTCCCGGGCACTACAGCAAAATCAGTTGGCTGACTTTGTC
TCCCTGTGTCTCCTCTGTATTTGTCTCGTTCTGTCTTCCTGCCCATTCCCACCTCTGATATCTA
TGTTCTCTTTCTCTCTCCTTTGTGTTTCTCCTGGACTTTGTCCTCCTTTGCTACTTCTCCACAA
CTCTCTCCTCTCCTTTTCTGTCTCTGTCCCCTTCTGACCTATATCTGTCTCTTCACCACCTTCC
TCTCCCGCCTCTCCTTTCTCCTCTTCTGGACTGTGGACTGTGGGTCTATTCCCCTGTACCTCTG
CTCTGCTCTCCTCTTCACCTCACCCCACATCTTTCATCTCTTCTCCCCACCCCTGCCTATCCCC
CTTTTCCCCACAGGCATGGATCCACAGCCCCCTCCACCTGCCCAGGGCAGCCCACCTCACCGTG
ACCGTGGCCGAGGCCGAGGCCGTGGCCGTGGCCGTGGCCGAGGCCGTGGTCGTGGCAGAGGGGG
TGCAGGAGCCCCTAGGGCACCTCTGCCCTGCCCCACCTGTGGTCGCCTCTTCCGCTTCCCTTAC
TACCTGTCTCGACACCGGCTGAGCCACTCGGGCCTCCGGCCCCATGCCTGCCCCCTATGCCCCA
AAGCTTTCCGCAGGCCTGCCCACCTTTCCCGCCACCTTCGTGGCCACGGGCCTCAGCCTCCTCT
GCGCTGCGCTGCCTGCCCACGCACCTTCCCGGAGCCGGCCCAGCTCAGGCGCCACCTGGCCCAG
GAGCACGCAGGTGGCGAGATGGACCTGACAACGCAGAGGGCAGTGAAGGAGGAGCCCGAGGCCA
GTTGGGGTCCGCAGGACGAAGGCGTGGAGCAGCCCTCCACGGTAGTGGTGGCCGGGGTTGCAGA
GGAAGCGACCGCACAGTGGCCCGCGGGGGACCCGGCTTCCGTGGCTGCCCCCACGAGTACCGAT
CCTCGGGAATCGGAAGCTGAGGAGGCCGAGGCTGGGGCTGCGGAGCTAAGGGCAGAGTTGGCAC
TGGCTGCGGGGCGACAGGAGGAGAAACAGGTCCTCCTCCAGGCCGACTGGACGCTGCTGTGTCT
CCGCTGTCGCGAAGCCTTCGCCACCAAGGGGGAGCTCAAAGCCCACCCGTGTCTGCGCCCTGAG
GGCGAACAGGAAGGCGAAGGAGGACCCCCGCCCCGCCCCAAGCGACACCAGTGTTCCATCTGCC
TCAAGGCTTTCGCCAGGCCCTGGTCTCTGTCGCGTCACCGGCTAGTCCACTCCACCGATCGGCC
TTTTGTGTGTCCAGACTGCGGCCTGGCCTTCCGCCTGGCCTCCTACCTCCGCCAGCACCGCCGT
GTCCATGGCCCTCTCAGCCTGCTGGCCCCACTACCCGGGGCCAGCAAGAAGGACGACAAGGCCT
CAGGTGGACGGAACTCAGGGAAAGGGCCTGAGGGGGTTGAAGGGGCAGAATGTGGAGGTGCATC
AGAAGGGGGCGAAGGCGGGCAGAATGGTGGAGACGCCACCCCAGCCCGGCCTCCGGCGGGGGAG
CCACGTTTCTGGTGTCCTGAGTGTGGCAAAGGTTTCCGACGCCGGGCACACCTACGCCAGCACG
GGGTCACCCACTCTGGGGCACGCCCTTTCCAGTGCGTGCGTTGCCAGAGGGAGTTCAAGCGACT
GGCAGACCTGGCCCGTCACGCTCAAGTCCATGCCGGGGGTCCCGCCCCGCATCCGTGCCCGCGA
TGCCCACGCCGTTTCTCCCGCGCCTACAGCCTCCTACGCCACCAACGCTGCCACCGCGCAGAGC
TGGAACGGGCAGAGCTGGAGAGGGCTGCAGCGCTGCAGGCACTCCAGACCCAGGCCATACAGTC
GTCTCAGCCTCCACAGCCGTTTAAGCAGGAGGCAGAAGGGCTCCCTCTGCCCATCTCCCACATC
AAGGAAGAGCCTCCCTCACCTGGCACTCCACCTCAGTCCCCGCCGGCTCCTCCCGTCTTTCTCA
GCGCCTCCTGTTTTGACAGCCAAGACCATTCAGCCTTTGAGATGGAGGATGAGGAGGTGGACAG
CAAGGCCCACCTATGTGGATTGGGAGACCTGGCCTCCTGACCCACACATCCACCTTCCACCCTC
CGAATTGAGCTCCCGGTTTGCAGTAAGGAAGAGGGAAACTGAAGGAGAGGAGCTTCCTCTGCCT
CCCCTGAGCCCTGGGTCATTCACCTTCTCCTTTACCCACCCCTAGACCCCTGATGCTGGTTAGG
AACCTCTCACCCCAACACATGTCTTAAGTAAGGCAGGACAAGGCAGAGGACATTTGGCCAGAAG
GATAAAGACTGCTGGGTTTGTCCCAGCCTGCCCATCCCTATTATACACACTGGACACCATCACC
TCTTTGGAACTGCCAGACCCTGGGGTTTCCCAGTGCAAAAGGTCTGCCCCTGTTGCTCTGTCTC
TGTGAATAAATGTGAGTTCGTGCAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001119748	(Get FASTA)	NCBI Sequence Viewer
	XP_006228318	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI61912	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001119748 ⟸ NM_001126276

- UniProtKB:

B1WBW3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDPQPPPPAQGSPPHRDRGRGRGRGRGRGRGRGRGRGGAGAPRAPLPCPTCGRLFRFPYYLSRH
RLSHSGLRPHACPLCPKAFRRPAHLSRHLRGHGPQPPLRCAACPRTFPEPAQLRRHLAQEHAGG
EMDLTTQRAVKEEPEASWGPQDEGVEQPSTVVVAGVAEEATAQWPAGDPASVAAPTSTDPRESE
AEEAEAGAAELRAELALAAGRQEEKQVLLQADWTLLCLRCREAFATKGELKAHPCLRPEGEQEG
EGGPPPRPKRHQCSICLKAFARPWSLSRHRLVHSTDRPFVCPDCGLAFRLASYLRQHRRVHGPL
SLLAPLPGASKKDDKASGGRNSGKGPEGVEGAECGGASEGGEGGQNGGDATPARPPAGEPRFWC
PECGKGFRRRAHLRQHGVTHSGARPFQCVRCQREFKRLADLARHAQVHAGGPAPHPCPRCPRRF
SRAYSLLRHQRCHRAELERAELERAAALQALQTQAIQSSQPPQPFKQEAEGLPLPISHIKEEPP
SPGTPPQSPPAPPVFLSASCFDSQDHSAFEMEDEEVDSKAHLCGLGDLAS

hide sequence

RefSeq Acc Id:	XP_006228318 ⟸ XM_006228256
- Peptide Label:	isoform X1
- UniProtKB:	B1WBW3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPQPPPPAQGSPPHRDRGRGRGRGRGRGRGRGRGRGGAGAPRAPLPCPTCGRLFRFPYYLSRH RLSHSGLRPHACPLCPKAFRRPAHLSRHLRGHGPQPPLRCAACPRTFPEPAQLRRHLAQEHAGG EMDLTTQRAVKEEPEASWGPQDEGVEQPSTVVVAGVAEEATAQWPAGDPASVAAPTSTDPRESE AEEAEAGAAELRAELALAAGRQEEKQVLLQADWTLLCLRCREAFATKGELKAHPCLRPEGEQEG EGGPPPRPKRHQCSICLKAFARPWSLSRHRLVHSTDRPFVCPDCGLAFRLASYLRQHRRVHGPL SLLAPLPGASKKDDKASGGRNSGKGPEGVEGAECGGASEGGEGGQNGGDATPARPPAGEPRFWC PECGKGFRRRAHLRQHGVTHSGARPFQCVRCQREFKRLADLARHAQVHAGGPAPHPCPRCPRRF SRAYSLLRHQRCHRAELERAELERAAALQALQTQAIQSSQPPQPFKQEAEGLPLPISHIKEEPP SPGTPPQSPPAPPVFLSASCFDSQDHSAFEMEDEEVDSKAHLCGLGDLAS hide sequence

RefSeq Acc Id:

ENSRNOP00000022349 ⟸ ENSRNOT00000022349

Protein Domains

C2H2-type

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13689690

Promoter ID:

EPDNEW_R215

Type:

single initiation site

Name:

Zfp579_1

Description:

zinc finger protein 579

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	72,399,190 - 72,399,250	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308475	AgrOrtholog
Ensembl Genes	ENSRNOG00000016608	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000022349	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000022349	ENTREZGENE, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:8369301	IMAGE-MGC_LOAD
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:308339	UniProtKB/TrEMBL
MGC_CLONE	MGC:187645	IMAGE-MGC_LOAD
NCBI Gene	308339	ENTREZGENE
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Zfp579	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	B1WBW3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-19	Zfp579	zinc finger protein 579	Znf579	zinc finger protein 579	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-25	Znf579	zinc finger protein 579	Zfp579	zinc finger protein 579	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Zfp579	zinc finger protein 579	Znf579_predicted	zinc finger protein 579 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)